View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8911_low_31 (Length: 587)
Name: NF8911_low_31
Description: NF8911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8911_low_31 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 515; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 515; E-Value: 0
Query Start/End: Original strand, 1 - 574
Target Start/End: Original strand, 52097090 - 52097649
Alignment:
| Q |
1 |
acgtctctatctttggaggctttcccttgactagctgaattaatatttttgccactgaaatttcagctattggatttgtgaaacccttgaactttaccaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52097090 |
acgtctctatctttggaggctttcccttgactagctgaattaatatttttgccactgaaatttcagctattggatttgtgaaacccttgaactttaccaa |
52097189 |
T |
|
| Q |
101 |
ttttagatgctccaattctgtatatttagttgcttgaattgagcctaaatttgactgcggagctgaataactattacgatcaatctgcatccaatcaagt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52097190 |
ttttagatgctccaattctgtatatttagttgcttgaattgagcctaaatttgactgcggagctgaataactattacgatcaatctgcatccaatcaagt |
52097289 |
T |
|
| Q |
201 |
atgataaaactgtcaaaaacatcaaaattatatgtagcaaaatagagcatcaattattgctaggtcttgcttgcaaagagttaaacaatttccataagct |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
52097290 |
atgataaaactgtcaaaaacatcaaaattatatgtagcaaaatagagcatcaattattgctaggtcttgcttgcaaagaattaaacaatttccataagct |
52097389 |
T |
|
| Q |
301 |
attccaaaagtttatgaaaattaattgaaaacaacttatgaacatgtcaaaagtttttgcaaacagtcccatcaaatttatgcgagtagataaactcaaa |
400 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52097390 |
attccaagagtttatgaaaattaattgaaaacaacttatgaacatgtcaaaagtttttgcaaacagtcccatcaaatttatgcgagtagata-------- |
52097481 |
T |
|
| Q |
401 |
caagttaactcaaacagtcctaccgttataacaagttgctccaaggcagggcataatttcaagaaggagattaaggcattgatgctgttttcattctcat |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52097482 |
------aactcaaacagtcctaccgttataacaagttgctccaaggcagggcataatttcaagaaggagattaaggcattgatgctgttttcattctcat |
52097575 |
T |
|
| Q |
501 |
ggttgtcaatccaccacaactctttcaatttatagaatataaaacttccactcgaaggagaaattgatgtccat |
574 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
52097576 |
ggttgtcaatccaccacaactctttcaatttatagaatataaaacttccactcgaaggagaaattgatggccat |
52097649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 293 - 358
Target Start/End: Original strand, 47917249 - 47917315
Alignment:
| Q |
293 |
cataagctattcc-aaaagtttatgaaaattaattgaaaacaacttatgaacatgtcaaaagttttt |
358 |
Q |
| |
|
|||||||||| || ||||||||| |||| | ||||||||||||||||||||||||| |||||||| |
|
|
| T |
47917249 |
cataagctataccgaaaagtttaaagaaataagttgaaaacaacttatgaacatgtcataagttttt |
47917315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 433 - 537
Target Start/End: Complemental strand, 7661021 - 7660917
Alignment:
| Q |
433 |
aagttgctccaaggcagggcataatttcaagaaggagattaaggcattgatgctgttttcattctcatggttgtcaatccaccacaactctttcaattta |
532 |
Q |
| |
|
|||||||||||||| ||| ||||||||||||||||||| |||||||| |||| | ||||| | || ||| ||||||||||| |||||| |||| ||| |
|
|
| T |
7661021 |
aagttgctccaaggaaggacataatttcaagaaggagaataaggcatccatgcaatattcatctttatagttatcaatccaccataactctctcaagtta |
7660922 |
T |
|
| Q |
533 |
tagaa |
537 |
Q |
| |
|
||||| |
|
|
| T |
7660921 |
tagaa |
7660917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 8 - 136
Target Start/End: Complemental strand, 7661455 - 7661327
Alignment:
| Q |
8 |
tatctttggaggctttcccttgactagctgaattaatatttttgccactgaaatttcagctattggatttgtgaaacccttgaactttaccaattttaga |
107 |
Q |
| |
|
|||||||||| | |||||||||| ||| |||||||| |||||||| |||||||||| || || || |||| || ||| | ||||||| ||| |||| | |
|
|
| T |
7661455 |
tatctttggaagttttcccttgattagatgaattaaacattttgccaatgaaatttcatcttttcgacttgtaaatcccataaactttatcaaatttaca |
7661356 |
T |
|
| Q |
108 |
tgctccaattctgtatatttagttgcttg |
136 |
Q |
| |
|
|| || |||| ||| ||||||||||||| |
|
|
| T |
7661355 |
tgttctaattttgtgcatttagttgcttg |
7661327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000009; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 312 - 349
Target Start/End: Complemental strand, 52440699 - 52440662
Alignment:
| Q |
312 |
ttatgaaaattaattgaaaacaacttatgaacatgtca |
349 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
52440699 |
ttatgaaaattagttgaaaacaacttatgaacatgtca |
52440662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 312 - 349
Target Start/End: Original strand, 47513686 - 47513723
Alignment:
| Q |
312 |
ttatgaaaattaattgaaaacaacttatgaacatgtca |
349 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| ||||| |
|
|
| T |
47513686 |
ttatgaaaataaattgaaaacaacttatgaacgtgtca |
47513723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 312 - 358
Target Start/End: Complemental strand, 10638572 - 10638526
Alignment:
| Q |
312 |
ttatgaaaattaattgaaaacaacttatgaacatgtcaaaagttttt |
358 |
Q |
| |
|
|||||||||| |||||||||||||||||| |||||||| ||| |||| |
|
|
| T |
10638572 |
ttatgaaaatgaattgaaaacaacttatggacatgtcataagctttt |
10638526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 294 - 342
Target Start/End: Complemental strand, 4730581 - 4730532
Alignment:
| Q |
294 |
ataagctattccaa-aagtttatgaaaattaattgaaaacaacttatgaa |
342 |
Q |
| |
|
|||||||||| ||| || ||||||||||| |||||||||||||||||||| |
|
|
| T |
4730581 |
ataagctatttcaacaaatttatgaaaataaattgaaaacaacttatgaa |
4730532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University