View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8911_low_32 (Length: 573)
Name: NF8911_low_32
Description: NF8911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8911_low_32 |
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Alignment Details
Target: chr7 (Bit Score: 469; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 469; E-Value: 0
Query Start/End: Original strand, 2 - 562
Target Start/End: Original strand, 49126185 - 49126760
Alignment:
| Q |
2 |
gtagccaactccatcagccagagagtctgtgtaaaagctacaaaatcttagttgtctgttacatgcgtttagatgttccaagcaaggatttcttatatca |
101 |
Q |
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|||||||||| | |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49126185 |
gtagccaacttcgtcagtcagagagtctgtgtaaaagctacaaaatcttagttgtctgttacatgcgtttagatgttccaagcaaggatttcttatatca |
49126284 |
T |
|
| Q |
102 |
aaattcagtagctgttacataggctttttgacagacggagttagcgataaggtccaaaactgaaacattttcataaatgagaaacccaaatgtgagnnnn |
201 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49126285 |
aaattcagtagctgttacataggctttttgacagacggagttagctataaggtccaaaactgaaacattttcataaatgagaaacccaaatgtgaaagaa |
49126384 |
T |
|
| Q |
202 |
nnnn---tgaaaattatcatattttgagggacaacagacata------------ctaaatattgttacaggttgtggagatcactaaaggaagcaaggtc |
286 |
Q |
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|||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49126385 |
aaaaaaatgaaaattatcatattttgagggacaacggacatattcaagtacctgctaaatattgttacaggttgtggagatcactaaaggaagcaaggtc |
49126484 |
T |
|
| Q |
287 |
aaatatgaacttgacaagaaaactggattaattaaggtacaaaccaatttcctgcttgcttattgaaatgttgtaatttgaaacagattttccacccaac |
386 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
49126485 |
aaatatgaacttgacaagaaaactggattaattaaggtacaaaccaatttcctgcttgcttattgaaatgttgtaatttgaaacagatttcccacccaac |
49126584 |
T |
|
| Q |
387 |
tccaattacagatgacttttttccttatcaatttgtctgtctgtctttagattgctcttcttaacatttgaacatttctcaggttgatcgaattttgtat |
486 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49126585 |
tccaattacagatgacttttttccttatcaatttgtctgtctgtctttagattgctcttcttaacatttgaacatttctcaggttgatcgaattttgtat |
49126684 |
T |
|
| Q |
487 |
tcttcagttgtttatcctcataactatggttttatccctcgtacactctgtgaagacaatgatccaattgatgtcc |
562 |
Q |
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| T |
49126685 |
tcttcagttgtttatcctcataactatggttttatccctcgtacactctgtgaagacaatgatccaattgatgtcc |
49126760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 65; Significance: 3e-28; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 465 - 561
Target Start/End: Complemental strand, 8800263 - 8800167
Alignment:
| Q |
465 |
tcaggttgatcgaattttgtattcttcagttgtttatcctcataactatggttttatccctcgtacactctgtgaagacaatgatccaattgatgtc |
561 |
Q |
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|||||||||||| ||| ||||||| |||||||||||||||||||||||||||||||||||||| || || |||||||||||||||||| | |||||| |
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| T |
8800263 |
tcaggttgatcggattctgtattcgtcagttgtttatcctcataactatggttttatccctcgaactctatgtgaagacaatgatccactcgatgtc |
8800167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 254 - 325
Target Start/End: Complemental strand, 8800415 - 8800344
Alignment:
| Q |
254 |
caggttgtggagatcactaaaggaagcaaggtcaaatatgaacttgacaagaaaactggattaattaaggta |
325 |
Q |
| |
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|||||||| ||||||||||| ||||| ||||||||||||||||||||||| || |||||| | ||||||||| |
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| T |
8800415 |
caggttgtagagatcactaagggaagtaaggtcaaatatgaacttgacaaaaagactggaatgattaaggta |
8800344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 272 - 325
Target Start/End: Complemental strand, 32815378 - 32815325
Alignment:
| Q |
272 |
aaaggaagcaaggtcaaatatgaacttgacaagaaaactggattaattaaggta |
325 |
Q |
| |
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|||||||||||||| ||||||||||| |||||||||| ||| | ||||||||| |
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| T |
32815378 |
aaaggaagcaaggttaaatatgaactggacaagaaaagcggacttattaaggta |
32815325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 272 - 324
Target Start/End: Original strand, 29368057 - 29368109
Alignment:
| Q |
272 |
aaaggaagcaaggtcaaatatgaacttgacaagaaaactggattaattaaggt |
324 |
Q |
| |
|
||||||| |||||| ||||||||||||||||||||||||||| | |||||||| |
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| T |
29368057 |
aaaggaaacaaggtgaaatatgaacttgacaagaaaactggacttattaaggt |
29368109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 272 - 324
Target Start/End: Original strand, 43547815 - 43547867
Alignment:
| Q |
272 |
aaaggaagcaaggtcaaatatgaacttgacaagaaaactggattaattaaggt |
324 |
Q |
| |
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||||||| |||||||||||||||||||||||| ||||||||| | |||||||| |
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| T |
43547815 |
aaaggaaacaaggtcaaatatgaacttgacaaaaaaactggacttattaaggt |
43547867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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