View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8911_low_33 (Length: 570)
Name: NF8911_low_33
Description: NF8911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8911_low_33 |
 | |
|
| [»] chr5 (5 HSPs) |
| |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 558; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 558; E-Value: 0
Query Start/End: Original strand, 5 - 570
Target Start/End: Original strand, 37841991 - 37842556
Alignment:
| Q |
5 |
atggacatcagcaagaacaatatcagcgggccaattccatcgagtttgggaaattgcacaaatctgacatacattaatctgtcaaggaacaaatttgcac |
104 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37841991 |
atggacataagcaagaacaatatcagcgggccaattccatcgagtttgggaaattgcacaaatctgacatacattaatctgtcaaggaacaaatttgcac |
37842090 |
T |
|
| Q |
105 |
gacttataccatcagagttgggaaacctattgaatcttgtgattttggaactttctcacaacaacttggaaggtcctctgccacatcagctgtcaaactg |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37842091 |
gacttataccatcagagttgggaaacctattgaatcttgtgattttggaactttctcacaacaacttggaaggtcctctgccacatcagctgtcaaactg |
37842190 |
T |
|
| Q |
205 |
tagtcacatggatcgttttgatataggattcaatttcctaaatggatcactcccatcaaatttgagaagttggacaaacataaccacattgattttaaga |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37842191 |
tagtcacatggatcgttttgatataggattcaatttcctaaatggatcactcccatcaaatttgagaagttggacaaacataaccacattgattttaaga |
37842290 |
T |
|
| Q |
305 |
gaaaattacttcacaggaggtatcccagagtttttagctaaatttagaaaccttcgtgagttacaacttggtggaaatttgcttggaggaaaaattcctc |
404 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37842291 |
gaaaattacttcacaggaggtatcccagagtttttagctaaatttagaaaccttcgtgagttacaacttggtggaaatttgcttggaggaaaaattcctc |
37842390 |
T |
|
| Q |
405 |
gatcgattgtaacattgcgtaatttgttctatgggttgaatttgagtgctaatggattgacaggtggcattcctgtagaaattcagaaactaaaaatgct |
504 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37842391 |
gatcgattgtaacattgcgtaatttgttctatgggttgaatttgagtgctaatggattgataggtggcattcctgtagaaattcagaaactaaaaatgct |
37842490 |
T |
|
| Q |
505 |
gcaaagtctggatatatccttgaacaatttgacgggaagcatagacgcacttggaagtcttgtttc |
570 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37842491 |
gcaaagtctggatatatccttgaacaatttgacgggaagcatagacgcacttggaagtcttgtttc |
37842556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 250; E-Value: 1e-138
Query Start/End: Original strand, 5 - 570
Target Start/End: Original strand, 37830668 - 37831233
Alignment:
| Q |
5 |
atggacatcagcaagaacaatatcagcgggccaattccatcgagtttgggaaattgcacaaatctgacatacattaatctgtcaaggaacaaatttgcac |
104 |
Q |
| |
|
|||||||| ||||| |||||||| | || |||||| |||| ||||||||||||||||||||||| ||||||||||| ||||||| |||||||||||| |
|
|
| T |
37830668 |
atggacataagcaaaaacaatattggtggaccaattacatcaagtttgggaaattgcacaaatctcgcatacattaatttgtcaagaaacaaatttgcag |
37830767 |
T |
|
| Q |
105 |
gacttataccatcagagttgggaaacctattgaatcttgtgattttggaactttctcacaacaacttggaaggtcctctgccacatcagctgtcaaactg |
204 |
Q |
| |
|
|||| ||||||| | || | |||||||| ||||||||||||||||||| ||| ||||||| || |||||||||||| |||||| | ||| |||||||| |
|
|
| T |
37830768 |
gactcataccattacagcttggaaaccttgtgaatcttgtgattttggatcttgctcacaataatttggaaggtcctttgccacttaggctttcaaactg |
37830867 |
T |
|
| Q |
205 |
tagtcacatggatcgttttgatataggattcaatttcctaaatggatcactcccatcaaatttgagaagttggacaaacataaccacattgattttaaga |
304 |
Q |
| |
|
| | | ||||||||||||||| | |||||||||||| ||||||||||||||||||||| ||||||||||||| || |||||| ||||||||||| ||| |
|
|
| T |
37830868 |
tgctaaaatggatcgttttgatgtgggattcaatttcttaaatggatcactcccatcaagtttgagaagttgggcacgcataactacattgattttcaga |
37830967 |
T |
|
| Q |
305 |
gaaaattacttcacaggaggtatcccagagtttttagctaaatttagaaaccttcgtgagttacaacttggtggaaatttgcttggaggaaaaattcctc |
404 |
Q |
| |
|
|||||||||||||| ||||||||||||| |||||| | ||||||| |||||||||||||||||||| |||||||||||||||||||| ||||||||| |
|
|
| T |
37830968 |
gaaaattacttcactggaggtatcccagggtttttgacagaatttagcaaccttcgtgagttacaactaggtggaaatttgcttggaggcgaaattcctc |
37831067 |
T |
|
| Q |
405 |
gatcgattgtaacattgcgtaatttgttctatgggttgaatttgagtgctaatggattgacaggtggcattcctgtagaaattcagaaactaaaaatgct |
504 |
Q |
| |
|
||| | | | ||||||| |||| |||||||||| |||||| ||||| |||||||||| ||||| |||||||| ||||||| ||| ||| | |||| |
|
|
| T |
37831068 |
gatggttggggacattgcataatctgttctatggattgaatctgagttctaatggattaacaggcagcattccttcagaaattgggaagctaggactgct |
37831167 |
T |
|
| Q |
505 |
gcaaagtctggatatatccttgaacaatttgacgggaagcatagacgcacttggaagtcttgtttc |
570 |
Q |
| |
|
|||||||||||||||||||||||||||||| || ||||||||| | || |||| |||||||||||| |
|
|
| T |
37831168 |
gcaaagtctggatatatccttgaacaatttaacaggaagcatatatgctcttgaaagtcttgtttc |
37831233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 5 - 570
Target Start/End: Original strand, 37836372 - 37836937
Alignment:
| Q |
5 |
atggacatcagcaagaacaatatcagcgggccaattccatcgagtttgggaaattgcacaaatctgacatacattaatctgtcaaggaacaaatttgcac |
104 |
Q |
| |
|
|||||| | ||||||||||||||||| || ||| ||||||| |||||||||||||||| |||||| ||||||| |||| |||| |||||||| |||||| |
|
|
| T |
37836372 |
atggacttgagcaagaacaatatcagtggaccagttccatcaagtttgggaaattgcaaaaatctcacatacagtaatttgtcgaggaacaattttgcag |
37836471 |
T |
|
| Q |
105 |
gacttataccatcagagttgggaaacctattgaatcttgtgattttggaactttctcacaacaacttggaaggtcctctgccacatcagctgtcaaactg |
204 |
Q |
| |
|
| || ||| | ||||||| || || || ||| ||||||||||||||| ||||||||||||||||||||||||||| | |||| || |||||||| || |
|
|
| T |
37836472 |
ggctcatatcgacagagttaggtaagcttgtgagtcttgtgattttggatctttctcacaacaacttggaaggtcctttaccactccaactgtcaaattg |
37836571 |
T |
|
| Q |
205 |
tagtcacatggatcgttttgatataggattcaatttcctaaatggatcactcccatcaaatttgagaagttggacaaacataaccacattgattttaaga |
304 |
Q |
| |
|
| | | ||||||| |||||| | ||||||||||||||||||||| |||||||||||| |||||||||||||| ||| ||||||||||||||||||||| |
|
|
| T |
37836572 |
ttctaaaatggatcagtttgatgtgggattcaatttcctaaatggaacactcccatcaagtttgagaagttggagaaatataaccacattgattttaaga |
37836671 |
T |
|
| Q |
305 |
gaaaattacttcacaggaggtatcccagagtttttagctaaatttagaaaccttcgtgagttacaacttggtggaaatttgcttggaggaaaaattcctc |
404 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| || |||||| ||||| || |||||||| ||||||||||||||| ||||||| |||||||||| |
|
|
| T |
37836672 |
gaaaattacttcactggaggtatcccagagtttttggcagaatttaccaacctccgcgagttacatcttggtggaaatttgtttggaggcaaaattcctc |
37836771 |
T |
|
| Q |
405 |
gatcgattgtaacattgcgtaatttgttctatgggttgaatttgagtgctaatggattgacaggtggcattcctgtagaaattcagaaactaaaaatgct |
504 |
Q |
| |
|
||||||| | |||||||| ||||||||||||||| ||||| |||||| ||||||||||||||||||||||||| |||||| ||| | |||| |
|
|
| T |
37836772 |
gatcgatgggaacattgcataatttgttctatggactgaatctgagtggtaatggattgacaggtggcattccttcggaaattggtttactcggactgct |
37836871 |
T |
|
| Q |
505 |
gcaaagtctggatatatccttgaacaatttgacgggaagcatagacgcacttggaagtcttgtttc |
570 |
Q |
| |
|
||||||||| ||||||||||| |||||||| || ||||||||||| || |||||| |||||||||| |
|
|
| T |
37836872 |
gcaaagtctagatatatccttaaacaatttaacaggaagcatagatgctcttggaggtcttgtttc |
37836937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 5 - 478
Target Start/End: Original strand, 37849747 - 37850218
Alignment:
| Q |
5 |
atggacatcagcaagaacaatatcagcgggccaattccatcgagtttgggaaattgcacaaatctgacatacattaatctgtcaaggaacaaatttgcac |
104 |
Q |
| |
|
|||||||| || |||||||| ||||| || | |||||||| ||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| |
|
|
| T |
37849747 |
atggacatgagtaagaacaaaatcagtggacggattccatcaagtttgggaaattgcacaaatcttacatacattaatttgtcaaggaacaaatttgcac |
37849846 |
T |
|
| Q |
105 |
gacttataccatcagagttgggaaacctattgaatcttgtgattttggaactttctcacaacaacttggaaggtcctctgccacatcagctgtcaaactg |
204 |
Q |
| |
|
| || ||||||||| || |||||||||| | || |||||||||||||| |||||| ||||||||||||||||| |||| | |||||||||||| || |
|
|
| T |
37849847 |
ggctcataccatcacagctgggaaaccttgtaaaccttgtgattttggatctttct---aacaacttggaaggtccattgcctcttcagctgtcaaattg |
37849943 |
T |
|
| Q |
205 |
tagtcacatggatcgttttgatataggattcaatttcctaaatggatcactcccatcaaatttgagaagttggacaaacataaccacattgattttaaga |
304 |
Q |
| |
|
|| | | ||||||| ||||||| | |||||||||||||||||||||||| ||||||||| |||| ||||||||| ||||||||||||||||||||||||| |
|
|
| T |
37849944 |
tactaaaatggatcattttgatgtgggattcaatttcctaaatggatcagtcccatcaagtttgggaagttggagaaacataaccacattgattttaaga |
37850043 |
T |
|
| Q |
305 |
gaaaattacttcacaggaggtatcccagagtttttagctaaatttagaaaccttcgtgagttacaacttggtggaaatttgcttggaggaaaaattcct- |
403 |
Q |
| |
|
|||||||||||||| ||||||||||||| |||||| | || |||| ||||| || |||||||||||||||||||||||| ||||||| ||||||||| |
|
|
| T |
37850044 |
gaaaattacttcactggaggtatcccagggtttttgccaaattttaacaacctccgcgagttacaacttggtggaaatttgtttggaggcaaaattcctg |
37850143 |
T |
|
| Q |
404 |
cgatcgattgtaacattgcgtaatttgttctatgggttgaatttgagtgctaatggattgacaggtggcattcct |
478 |
Q |
| |
|
||||||||| || |||||| ||| |||||||||| |||||| | |||||||||||||||| ||||| ||||||| |
|
|
| T |
37850144 |
cgatcgattttattattgcgcaatctgttctatggattgaatcttagtgctaatggattgaaaggtgacattcct |
37850218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 504 - 570
Target Start/End: Original strand, 37850250 - 37850316
Alignment:
| Q |
504 |
tgcaaagtctggatatatccttgaacaatttgacgggaagcatagacgcacttggaagtcttgtttc |
570 |
Q |
| |
|
|||||||||| |||||||||||||||||||| || ||||||||||| || ||||| |||||||||| |
|
|
| T |
37850250 |
tgcaaagtctagatatatccttgaacaatttaacaggaagcatagatgcccttggtggtcttgtttc |
37850316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 5 - 570
Target Start/End: Original strand, 36865123 - 36865684
Alignment:
| Q |
5 |
atggacatcagcaagaacaatatcagcgggccaattccatcgagtttgggaaattgcacaaatctgacatacattaatctgtcaaggaacaaatttgcac |
104 |
Q |
| |
|
|||||||| |||||||||| |||| | || || || ||||| ||||||||||||| ||| ||||| |||||||||||| ||||||| |||||||||||| |
|
|
| T |
36865123 |
atggacatgagcaagaacagtatcggtggaccgataccatcaagtttgggaaattacactaatcttacatacattaatttgtcaagcaacaaatttgcag |
36865222 |
T |
|
| Q |
105 |
gacttataccatcagagttgggaaacctattgaatcttgtgattttggaactttctcacaacaacttggaaggtcctctgccacatcagctgtcaaactg |
204 |
Q |
| |
|
| || ||||||| |||| |||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| |||| | | | ||||| || |
|
|
| T |
36865223 |
ggctcataccattagagctgggaaaccttgtgaatcttgtgattttggatctttctcacaacaacttggaaggtccattgcctctt----tttcaaattg |
36865318 |
T |
|
| Q |
205 |
tagtcacatggatcgttttgatataggattcaatttcctaaatggatcactcccatcaaatttgagaagttggacaaacataaccacattgattttaaga |
304 |
Q |
| |
|
|| | |||||||||||||||| | |||||||||||||||||||||||| ||||||||| ||||| |||||||| | ||||| ||||||| | || ||| |
|
|
| T |
36865319 |
tactaacatggatcgttttgacgtgggattcaatttcctaaatggatcattcccatcaagtttgataagttggagaggcataagcacattggtcttgaga |
36865418 |
T |
|
| Q |
305 |
gaaaattacttcacaggaggtatcccagagtttttagctaaatttagaaaccttcgtgagttacaacttggtggaaatttgcttggaggaaaaattcctc |
404 |
Q |
| |
|
|| ||| | |||||||| |||||||||| |||||| || ||||||| |||||| |||||||||||||||||||||||| | | ||||| |||||||||| |
|
|
| T |
36865419 |
gataatcatttcacagggggtatcccagggtttttggcagaatttagcaaccttagtgagttacaacttggtggaaattcgttcggaggcaaaattcctc |
36865518 |
T |
|
| Q |
405 |
gatcgattgtaacattgcgtaatttgttctatgggttgaatttgagtgctaatggattgacaggtggcattcctgtagaaattcagaaactaaaaatgct |
504 |
Q |
| |
|
|||| || | |||||||| |||| |||| ||||| |||||| |||||| |||||||||||||||||| |||||| ||||||| || ||| | |||| |
|
|
| T |
36865519 |
gatcaatgggaacattgcataatctgttttatggattgaatctgagtgataatggattgacaggtggtattccttcagaaattgggatgctaggactgct |
36865618 |
T |
|
| Q |
505 |
gcaaagtctggatatatccttgaacaatttgacgggaagcatagacgcacttggaagtcttgtttc |
570 |
Q |
| |
|
|||||| ||||||||||||||||||||||||| ||||||||||| || |||| | |||||||||| |
|
|
| T |
36865619 |
gcaaagcttggatatatccttgaacaatttgacaggaagcatagatgctcttgaaggtcttgtttc |
36865684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 5 - 206
Target Start/End: Original strand, 45560972 - 45561173
Alignment:
| Q |
5 |
atggacatcagcaagaacaatatcagcgggccaattccatcgagtttgggaaattgcacaaatctgacatacattaatctgtcaaggaacaaatttgcac |
104 |
Q |
| |
|
||||| |||||||| ||||| |||| ||| |||||||||| ||||| ||||| ||||||||||| ||| | | | | |||||| |||||||||| |
|
|
| T |
45560972 |
atggagatcagcaacaacaaaatcaacggaacaattccatcaagtttaggaaactgcacaaatctaacagatttaattttgtcaacgaacaaatttagtg |
45561071 |
T |
|
| Q |
105 |
gacttataccatcagagttgggaaacctattgaatcttgtgattttggaactttctcacaacaacttggaaggtcctctgccacatcagctgtcaaactg |
204 |
Q |
| |
|
| ||||||||| |||||| |||||||| |||||||| || |||| ||| |||||||||||| ||||| ||| ||||| |||||||||||| || |
|
|
| T |
45561072 |
ggcttataccacaagagttaggaaaccttgtgaatcttcggactttgattcttgatcacaacaacttagaaggacctttgccatttcagctgtcaaattg |
45561171 |
T |
|
| Q |
205 |
ta |
206 |
Q |
| |
|
|| |
|
|
| T |
45561172 |
ta |
45561173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University