View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8911_low_37 (Length: 554)
Name: NF8911_low_37
Description: NF8911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8911_low_37 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 501; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 501; E-Value: 0
Query Start/End: Original strand, 8 - 536
Target Start/End: Complemental strand, 45283038 - 45282510
Alignment:
| Q |
8 |
catggatctctgcttccgatcgcaagcttttggctaaaatgcaacgaaaaaattggagagcaaatattaggcctaatgctgttgttgccaaggatggtag |
107 |
Q |
| |
|
||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
45283038 |
catggatctcttcttctgatcgcaagcttttggctaaaatgcaacgaaaaaattggagagcaaatattatgcctaatgctgttgttgccaaggatggtag |
45282939 |
T |
|
| Q |
108 |
cggccaatttaaaaccatccaggctgctcttgccgcttaccctaagggaaacaaaggcagatatgttatctacgttaaggccggtgtctatgacgaatac |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45282938 |
cggccaatttaaaaccatccaggctgctcttgcctcttaccctaagggaaacaaaggcagatatgttatctacgttaaggccggtgtctatgacgaatac |
45282839 |
T |
|
| Q |
208 |
atcactgtccccaaggatgctgttaacattcttatgtatggtgatggccctgcaaggaccattgtcaccggtagaaagagctttgctgctggtgtcaaga |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
45282838 |
atcactgtccccaaggatgctgttaacattcttatgtatggtgatggccctgcaaggaccattgtcactggtagaaagagctttgctgctggtgtcaaga |
45282739 |
T |
|
| Q |
308 |
ccatgcaaaccgccaccttcggtacgtaattcaattatcatcgatcaaaacttttttattttatttaattaattatgtacttatgaatgaagaaagagta |
407 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
45282738 |
ccatgcaaaccgccaccttcggtacttaattcaattatcatcgatcaaaacttttttattttatttaattaattatttacttatgaatgaagaaagagta |
45282639 |
T |
|
| Q |
408 |
tatgagaaaaagtggcatcactctcaaaattcatttttgaagaaaacataactaacattgaaaagatatagatacacatataacattgacatatatagcc |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45282638 |
tatgagaaaaagtggcatcactctcaaaattcatttttgaagaaaacataactaacattgaaaagatatagatacacatataacattgacatatatagcc |
45282539 |
T |
|
| Q |
508 |
aatgtgatcgaaattactaattaattgat |
536 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
45282538 |
aatgtgatcgaaattactaattaattgat |
45282510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 8 - 536
Target Start/End: Complemental strand, 45274797 - 45274267
Alignment:
| Q |
8 |
catggatctctgcttccgatcgcaagcttttggctaaaatgcaacgaaaaaattggagagcaaatattaggcctaatgctgttgttgccaaggatggtag |
107 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
45274797 |
catggatctctgcttctgatcgcaagcttttggctaaaatgcaacgaaaaaattggagagcaaatattaggcctaatgctgttgttgccaatgatggtag |
45274698 |
T |
|
| Q |
108 |
cggccaatttaaaaccatccaggctgctcttgccgcttaccctaagggaaacaaaggcagatatgttatctacgttaaggccggtgtctatgacgaatac |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| ||| |||||||||||||||| |||||||||||||||||| |
|
|
| T |
45274697 |
cggccaatttaaaaccatccaggctgctcttgcctcttatcctaagggaaacaaaggcaggtattttatctacgttaaggctggtgtctatgacgaatac |
45274598 |
T |
|
| Q |
208 |
atcactgtccccaaggatgctgttaacattcttatgtatggtgatggccctgcaaggaccattgtcaccggtagaaagagctttgctgctggtgtcaaga |
307 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| ||||| |
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|
| T |
45274597 |
atcactgtacccaaggatgctgttaacattcttatgtatggtgatggccctgcaaggaccattgtcaccggtagaaagaactttgctgccggtaccaaga |
45274498 |
T |
|
| Q |
308 |
ccatgcaaaccgccaccttcggtacgtaattcaattatcatcgatcaaaac-ttttttattttatttaattaattatgta-cttatgaatgaagaaagag |
405 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||| |||||| | ||||||||||||||| ||||||| | || ||||||| ||||||||||| |
|
|
| T |
45274497 |
ccatgcaaaccgccaccttcggtacgtaattcaattattatctatcaaagctttttttattttatttgattaattgtataccttatgattgaagaaagag |
45274398 |
T |
|
| Q |
406 |
tatatgagaaaaagtggcatcactctcaaaattcatttttgaagaaaacataactaacattgaaaagatatagatacacatataacattgacatatatag |
505 |
Q |
| |
|
||||| ||||||||| ||||||||||||||||| ||||||||||||||||||||| ||||||||||| | | ||| ||||||||||||||||||||||| |
|
|
| T |
45274397 |
tatataagaaaaagtagcatcactctcaaaatttatttttgaagaaaacataactcgcattgaaaagagaaatatatacatataacattgacatatatag |
45274298 |
T |
|
| Q |
506 |
ccaatgtgatcgaaattactaattaattgat |
536 |
Q |
| |
|
||| ||||||||||||||||||||||||||| |
|
|
| T |
45274297 |
ccagtgtgatcgaaattactaattaattgat |
45274267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 8 - 474
Target Start/End: Complemental strand, 45294426 - 45293957
Alignment:
| Q |
8 |
catggatctctgcttccgatcgcaagcttttggctaaaatgcaacgaaaaaattggagagcaaatattaggcctaatgctgttgttgccaaggatggtag |
107 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||| || |||| |||||||||||| || || |||||||||||||||||||||||||||| |
|
|
| T |
45294426 |
catggatctctgcttctgatcgcaagcttttggctaaaatgaaaggaaacggatggagagcaaatgttggggctaatgctgttgttgccaaggatggtag |
45294327 |
T |
|
| Q |
108 |
cggccaatttaaaaccatccaggctgctcttgccgcttaccctaagggaaacaaaggcagatatgttatctacgttaaggccggtgtctatgacgaatac |
207 |
Q |
| |
|
||| |||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| ||||||||||||||| || |||||||| |||||| |
|
|
| T |
45294326 |
cggtcaatttaaaaccatccaggctgctattgccgcttaccctaaggggaacaaaggcagatatactatctacgttaaggctggcgtctatgatgaatac |
45294227 |
T |
|
| Q |
208 |
atcactgtccccaaggatgctgttaacattcttatgtatggtgatggccctgcaaggaccattgtcaccggtagaaagagctttgctgctggtgtcaaga |
307 |
Q |
| |
|
|||||| | ||||| || |||||||||||||||||||||||||||||||| | || ||||||||| ||||| ||||||| | ||||||||||||||||| |
|
|
| T |
45294226 |
atcactattcccaaagacgctgttaacattcttatgtatggtgatggccccggaaagaccattgttaccggaagaaagaacggtgctgctggtgtcaaga |
45294127 |
T |
|
| Q |
308 |
ccatgcaaaccgccaccttcggtacgtaattcaattatcatcgatcaaaacttttttattttatttaattaattatgta-cttatgaatgaagaaagagt |
406 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| |||| |||| ||||||||||||||||| || |
|
|
| T |
45294126 |
ccatgcaaaccgccaccttcggtaagtaattcaattatcatcgatcacaacttttttattttatttaataaattgtgtaccttatgaatgaagaaagggt |
45294027 |
T |
|
| Q |
407 |
a--tatgagaaaaagtggcatcactctcaaaattcatttttgaagaaaacataactaacattgaaaagat |
474 |
Q |
| |
|
| |||||||| ||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
45294026 |
aatgatgagaaatagtaacatcactctcaaaattcatttttgaagaaaacataactcacattgaaaagat |
45293957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 8 - 474
Target Start/End: Complemental strand, 45303386 - 45302917
Alignment:
| Q |
8 |
catggatctctgcttccgatcgcaagcttttggctaaaatgcaacgaaaaaattggagagcaaatattaggcctaatgctgttgttgccaaggatggtag |
107 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||| || |||| |||||||||||| || || |||||||||||||||||||||||||||| |
|
|
| T |
45303386 |
catggatctctgcttctgatcgcaagcttttggctaaaatgaaaggaaacggatggagagcaaatgttggggctaatgctgttgttgccaaggatggtag |
45303287 |
T |
|
| Q |
108 |
cggccaatttaaaaccatccaggctgctcttgccgcttaccctaagggaaacaaaggcagatatgttatctacgttaaggccggtgtctatgacgaatac |
207 |
Q |
| |
|
||| |||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| ||||||||||||||| || |||||||| |||||| |
|
|
| T |
45303286 |
cggtcaatttaaaaccatccaggctgctattgccgcttaccctaaggggaacaaaggcagatatactatctacgttaaggctggcgtctatgatgaatac |
45303187 |
T |
|
| Q |
208 |
atcactgtccccaaggatgctgttaacattcttatgtatggtgatggccctgcaaggaccattgtcaccggtagaaagagctttgctgctggtgtcaaga |
307 |
Q |
| |
|
|||||| | ||||| || |||||||||||||||||||||||||||||||| | || ||||||||| ||||| ||||||| | ||||||||||||||||| |
|
|
| T |
45303186 |
atcactattcccaaagacgctgttaacattcttatgtatggtgatggccccggaaagaccattgttaccggaagaaagaacggtgctgctggtgtcaaga |
45303087 |
T |
|
| Q |
308 |
ccatgcaaaccgccaccttcggtacgtaattcaattatcatcgatcaaaacttttttattttatttaattaattatgta-cttatgaatgaagaaagagt |
406 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| |||| |||| ||||||||||||||||| || |
|
|
| T |
45303086 |
ccatgcaaaccgccaccttcggtaagtaattcaattatcatcgatcacaacttttttattttatttaataaattgtgtaccttatgaatgaagaaagggt |
45302987 |
T |
|
| Q |
407 |
a--tatgagaaaaagtggcatcactctcaaaattcatttttgaagaaaacataactaacattgaaaagat |
474 |
Q |
| |
|
| |||||||| ||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
45302986 |
aatgatgagaaatagtaacatcactctcaaaattcatttttgaagaaaacataactcacattgaaaagat |
45302917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 8 - 477
Target Start/End: Complemental strand, 45271264 - 45270796
Alignment:
| Q |
8 |
catggatctctgcttccgatcgcaagcttttggctaaaatgcaacgaaaaaattggagagcaaatattaggcctaatgctgttgttgccaaggatggtag |
107 |
Q |
| |
|
||||||||||| |||| | ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
45271264 |
catggatctcttcttctggtcgcaagcttttggctaaaatgcaacgaaaaggatggagagcaaatattaggcctaatgctgttgttgccaatgatggtag |
45271165 |
T |
|
| Q |
108 |
cggccaatttaaaaccatccaggctgctcttgccgcttaccctaagggaaacaaaggcagatatgttatctacgttaaggccggtgtctatgacgaatac |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45271164 |
cggccaatttaaaaccatccaggctgctcttgcctcttaccctaagggaaacaaagacagatatgttatctacgttaaggccggtgtctatgacgaatac |
45271065 |
T |
|
| Q |
208 |
atcactgtccccaaggatgctgttaacattcttatgtatggtgatggccctgcaaggaccattgtcaccggtagaaagagctttgctgctggtgtcaaga |
307 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||| | || ||| ||| | |
|
|
| T |
45271064 |
atcactgtccccaaggaggctgttaacattcttatgtatggtgatggccctgcaaagaccattgtcactggtagaaagaaccaaatggccggtaccaaca |
45270965 |
T |
|
| Q |
308 |
ccatgcaaaccgccaccttcggtacgtaattcaattatcatcgatcaaaacttttttattttatttaattaattatgta-cttatgaatgaagaaagagt |
406 |
Q |
| |
|
| | | || |||||||| |||||||||||| |||| |||||||||| | ||||||||||||||||||||| |||| |||||||||||||| ||||| |
|
|
| T |
45270964 |
cacagaacactgccaccttttgtacgtaattcagttat-atcgatcaaagc--ttttattttatttaattaattgtgtaccttatgaatgaagagagagt |
45270868 |
T |
|
| Q |
407 |
atatgagaaaaagtggcatcactctcaaaattcatttttgaagaaaaca-taactaacattgaaaagatata |
477 |
Q |
| |
|
| ||| |||| ||| ||||||||||||||||||||||||||| |||||| ||||| |||||||||||||||| |
|
|
| T |
45270867 |
agatgtgaaatagtagcatcactctcaaaattcatttttgaaaaaaacattaactcacattgaaaagatata |
45270796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 161 - 206
Target Start/End: Complemental strand, 38583289 - 38583244
Alignment:
| Q |
161 |
aaggcagatatgttatctacgttaaggccggtgtctatgacgaata |
206 |
Q |
| |
|
|||| |||||||| |||||||| ||||| ||||||||||||||||| |
|
|
| T |
38583289 |
aaggtagatatgtcatctacgtcaaggctggtgtctatgacgaata |
38583244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 143 - 212
Target Start/End: Complemental strand, 38588300 - 38588231
Alignment:
| Q |
143 |
cttaccctaagggaaacaaaggcagatatgttatctacgttaaggccggtgtctatgacgaatacatcac |
212 |
Q |
| |
|
|||| ||||||||| |||||||||||| ||||||| || ||||| || ||||||||||| |||||||| |
|
|
| T |
38588300 |
cttatcctaagggattcaaaggcagatacattatctatgtcaaggctggggtctatgacgagtacatcac |
38588231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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