View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8911_low_38 (Length: 553)
Name: NF8911_low_38
Description: NF8911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8911_low_38 |
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Alignment Details
Target: chr5 (Bit Score: 261; Significance: 1e-145; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 189 - 535
Target Start/End: Original strand, 36204286 - 36204640
Alignment:
| Q |
189 |
tgtggttgctatgtaatccttcttgccctttctggtcatgattgtgttttgtacaatgcatgcatgtgatcaattgttaaaggatgttttggtatagaat |
288 |
Q |
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| T |
36204286 |
tgtggttgctatgtaatccttcttgccctttctggtcatgattgtgttttgtacaatgcatgcatgtgatcaattgttaaaggatgttttggtatagaat |
36204385 |
T |
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| Q |
289 |
tatatagannnnnnnnnnnn-------aaaccaaattaatgtaaacaagaatttaagttctttgattgttgttttcagattattgatcggaagtgtcaga |
381 |
Q |
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| T |
36204386 |
tatatagtttttttttttttttttttaaaaccaaattaatgtaaacaagaatttaagttctttgattgttgttttcagattattgatcggaagtgtcaga |
36204485 |
T |
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| Q |
382 |
acaacaatgctcaagataaaaagtgcagcccatctgcaaagaaacgtcgaaaccttaaaactaagtatgattagcttgaaacttctttcttgtactacat |
481 |
Q |
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| T |
36204486 |
acaacaatgctcaagatataaagtgcagcccatctgcaaagaaacgtcgaaaccgtaaaactaagtatgattagcttgaaacttctttcttgtactatat |
36204585 |
T |
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| Q |
482 |
aattagggttatttaaggcttgtgtttttactatgag-ttttgttgcatgttttt |
535 |
Q |
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| T |
36204586 |
aattagggttatttaaagcttgtgtttttattatgagtttttgttgcatgttttt |
36204640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 10 - 195
Target Start/End: Original strand, 36204084 - 36204266
Alignment:
| Q |
10 |
agatggacatcatttattaagaaagatgattcatttctcacacgttggagttgggatcccaatgcttccaagaatgagcttggttctacttctaccaaag |
109 |
Q |
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| T |
36204084 |
agattgacatcatttattaagaaagataattcatttctcacacgttggagttgggaccccaatgcttccaagaatgagcttggttctacttctacca--- |
36204180 |
T |
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| Q |
110 |
aaggagagaatctttcttttcctcctgaatcatattttagtcatgaggtacttatttttccttgtttaatgtccagctttgtggtt |
195 |
Q |
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| T |
36204181 |
aaggagagaatctttcttttcctcctgaatcatattttagtcatgaggtacttgtttttccttgtttaatgtccagctttgtggtt |
36204266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 9e-19; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 317 - 397
Target Start/End: Complemental strand, 11068407 - 11068327
Alignment:
| Q |
317 |
ttaatgtaaacaagaatttaagttctttgattgttgttttcagattattgatcggaagtgtcagaacaacaatgctcaaga |
397 |
Q |
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| T |
11068407 |
ttaatgtaaacaagacttaaagttatttgattgttgttttcagattattgataggaagtgttggaacgacaatgcacaaga |
11068327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 252 - 286
Target Start/End: Complemental strand, 11068504 - 11068470
Alignment:
| Q |
252 |
atgtgatcaattgttaaaggatgttttggtataga |
286 |
Q |
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| T |
11068504 |
atgtgatcaattgttaaagaatgttttggtataga |
11068470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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