View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8911_low_4 (Length: 871)
Name: NF8911_low_4
Description: NF8911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8911_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 285; Significance: 1e-159; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 24 - 344
Target Start/End: Complemental strand, 4087070 - 4086750
Alignment:
| Q |
24 |
gaaatcatttgtcgtaaaattgatctaaaccgaaccgtacgcactttcagaagcaatgaaccaaacgaaccgtatctagaaaaacctgacccaccattaa |
123 |
Q |
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| T |
4087070 |
gaaatcatttgtttcaaaatcgatctaaaccgaaccgtacgcactttcacaagcaatgaaccaaacgaaccgtatctaaaaaaacctgacccaccatcaa |
4086971 |
T |
|
| Q |
124 |
gttctcttcactcactcatcacaatcacaagtacctttcgcacacacttccccttatttccgtgcggaaactgttccctctggtctctttcttcttcaca |
223 |
Q |
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| T |
4086970 |
gttctcttcactcactcatcacaatcacaagtacctttcgcacacacttccccttatttccgtgcggaaactgttccctttggtctctttcttcttcaca |
4086871 |
T |
|
| Q |
224 |
cttcactgttcactcttccaacgcgatcacaacaacccttcaaccaaattcaccaacatcaacacattcctctggtacttcacattttcattttctcact |
323 |
Q |
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| T |
4086870 |
cttcactgttcactcttccaacgcgatcacaacaacccttcaaccaaattcaccaacatcaacacattcctctggtacttcacattttcattttctcact |
4086771 |
T |
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| Q |
324 |
tttctcttaattgggtcttca |
344 |
Q |
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||||||| ||||||||||||| |
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| T |
4086770 |
tttctctcaattgggtcttca |
4086750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 150; E-Value: 8e-79
Query Start/End: Original strand, 699 - 856
Target Start/End: Complemental strand, 4086387 - 4086230
Alignment:
| Q |
699 |
ggaatctagggtaatgtaatgtaatgaggctagtttggtgatataaatagagtttttgattcttgtatttttgttgaaatgttggtattggttgattcat |
798 |
Q |
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| T |
4086387 |
ggaatctagggtaatgtaatttaatgaggctagtttggtgatataaatagagtttttgattcttgtatttttgttgaaatgttggtattggttgattcat |
4086288 |
T |
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| Q |
799 |
atatgataaaattaaggtgatctcatttcattttgagaattagtgttgctttgatgtc |
856 |
Q |
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| T |
4086287 |
atatgataaaattaaggtgatctcatttcattttgagaattagtgttgctttgttgtc |
4086230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 103; E-Value: 9e-51
Query Start/End: Original strand, 450 - 563
Target Start/End: Complemental strand, 4086638 - 4086524
Alignment:
| Q |
450 |
ttaattgttcaaaaa-ttggttttttcggttagtaatgatcagacattattgtggattgtttatgtgacagtttagtggttgaagtgaagtgtgattgta |
548 |
Q |
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| T |
4086638 |
ttaattgttcaaaaaattggttttttcggttagtaatgatcagacattattgtggattgtttatgtgacagtttagtggttgaagtgaagtgtgattgta |
4086539 |
T |
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| Q |
549 |
aattcgtatatgatg |
563 |
Q |
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|||| |||||||||| |
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| T |
4086538 |
aatttgtatatgatg |
4086524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 435 - 526
Target Start/End: Complemental strand, 4085995 - 4085906
Alignment:
| Q |
435 |
cattcccattttacgttaattgttcaaaaa-ttggttttttcggttagtaatgatcagacattattgtggattgtttatgtgacagtttagtg |
526 |
Q |
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| T |
4085995 |
cattcccgttttacgttaatggttcaaaaaattggttttttcgcttagtaattatcagccatta---tggattgtttctgtggccgtttagtg |
4085906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 641 - 682
Target Start/End: Complemental strand, 4086451 - 4086410
Alignment:
| Q |
641 |
tttgatttgtatgataagtcggtttagggttttagatttgca |
682 |
Q |
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| T |
4086451 |
tttgatttgtataataagtcggtttagggttttagatttgca |
4086410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 736 - 856
Target Start/End: Complemental strand, 4084940 - 4084820
Alignment:
| Q |
736 |
gtgatataaatagagtttttgattcttgtatttttgttgaaatgttggtattggttgattcatatatgataaaattaaggtgatctcatttcattttgag |
835 |
Q |
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| T |
4084940 |
gtgatacaaatagatatgttgatttttgtgtttttgttgtagtgtgtgtattggttgattcatgtaagataaaattagggtgatctcacatcattatgaa |
4084841 |
T |
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| Q |
836 |
aattagtgttgctttgatgtc |
856 |
Q |
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| T |
4084840 |
aatgatcgttgctttgttgtc |
4084820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 714 - 788
Target Start/End: Complemental strand, 4085704 - 4085630
Alignment:
| Q |
714 |
gtaatgtaatgaggctagtttggtgatataaatagagtttttgattcttgtatttttgttgaaatgttggtattg |
788 |
Q |
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| T |
4085704 |
gtaatgtaatgagggtagttcggggatacaaatatggtttttgaatcttgtgtttttgttggaatgtgggtattg |
4085630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 21 - 59
Target Start/End: Complemental strand, 4087123 - 4087085
Alignment:
| Q |
21 |
atcgaaatcatttgtcgtaaaattgatctaaaccgaacc |
59 |
Q |
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| T |
4087123 |
atcgaaatcatttgtcgtaaaatcgatctaaaccgaacc |
4087085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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