View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8911_low_40 (Length: 553)

Name: NF8911_low_40
Description: NF8911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8911_low_40
NF8911_low_40
[»] chr6 (3 HSPs)
chr6 (102-532)||(29320118-29320552)
chr6 (102-137)||(68256-68291)
chr6 (102-137)||(33053424-33053459)
[»] chr8 (7 HSPs)
chr8 (102-157)||(17693867-17693919)
chr8 (102-137)||(10377497-10377532)
chr8 (102-137)||(23230444-23230479)
chr8 (102-137)||(31013825-31013860)
chr8 (102-137)||(45446065-45446100)
chr8 (106-157)||(25191324-25191372)
chr8 (105-137)||(27110721-27110753)
[»] chr7 (5 HSPs)
chr7 (102-137)||(12141564-12141599)
chr7 (102-137)||(34899860-34899895)
chr7 (100-137)||(9915944-9915981)
chr7 (100-137)||(9923856-9923893)
chr7 (102-138)||(24770054-24770090)
[»] chr5 (4 HSPs)
chr5 (102-137)||(6012394-6012429)
chr5 (102-137)||(13007026-13007061)
chr5 (102-137)||(25979955-25979990)
chr5 (102-137)||(38597595-38597630)
[»] chr4 (5 HSPs)
chr4 (102-137)||(2520595-2520630)
chr4 (102-137)||(22611002-22611037)
chr4 (100-137)||(10259148-10259185)
chr4 (104-137)||(13633932-13633965)
chr4 (102-157)||(26633926-26633978)
[»] chr3 (10 HSPs)
chr3 (102-137)||(6954952-6954987)
chr3 (102-137)||(9998264-9998299)
chr3 (102-137)||(10232868-10232903)
chr3 (102-137)||(21431423-21431458)
chr3 (102-137)||(40487123-40487158)
chr3 (102-137)||(45568700-45568735)
chr3 (102-137)||(47895949-47895984)
chr3 (102-137)||(52923371-52923406)
chr3 (102-134)||(35865189-35865221)
chr3 (102-134)||(38545636-38545668)
[»] chr2 (5 HSPs)
chr2 (102-137)||(7646280-7646315)
chr2 (102-137)||(7678134-7678169)
chr2 (102-137)||(27097661-27097696)
chr2 (100-137)||(9169511-9169548)
chr2 (102-157)||(31129004-31129056)
[»] chr1 (3 HSPs)
chr1 (102-137)||(35484634-35484669)
chr1 (102-137)||(41176983-41177018)
chr1 (102-134)||(7337919-7337951)
[»] scaffold0127 (1 HSPs)
scaffold0127 (102-134)||(15293-15325)
[»] scaffold0026 (1 HSPs)
scaffold0026 (102-134)||(72120-72152)


Alignment Details
Target: chr6 (Bit Score: 290; Significance: 1e-162; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 102 - 532
Target Start/End: Original strand, 29320118 - 29320552
Alignment:
Q  102 aacgaaggagaaagaaagtttagagaggagttggaggaatttgtctcactaaaaaatttaaaaatttagattgtttgatcttaattcaaaaattatcaac 201  Q
    |||||||||||||||||||||| |||| |||||||||| ||| ||||| ||||||| ||||||||||| |||||||||||||||||||| ||||||||||    
T  29320118 aacgaaggagaaagaaagtttaaagagaagttggaggagtttctctcattaaaaaacttaaaaatttaaattgtttgatcttaattcaacaattatcaac 29320217  T
Q  202 ttggtgactgagtaaatacgcagatttgcttatcacagcatatccaaattannnnnnnnnnnnnnngaaggaagcagatcc------tattatgacttac 295  Q
    ||||||||||||||||||||||||||||||||| |||| |  |||||||||               |||||||||||||||      |||||||||||||    
T  29320218 ttggtgactgagtaaatacgcagatttgcttattacagtaggtccaaattaatttttattttttttgaaggaagcagatccaaattctattatgacttac 29320317  T
Q  296 atgagtggattgtcggacatgaaaagaaaaatatattaacaacttattttctatataattgaagtgagaacaaggttcaagaaattcatcatttgtgcaa 395  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||    
T  29320318 atgagtggattgtgggacatgaaaagaaaaatatattaacaacttattttctatattattgaagtgagaaaaaggttcaagaaattcatcatttgtgcaa 29320417  T
Q  396 tagtatatcttttcctctttatggccactggccaaccttatctcacagcaatgtgcaagcactgtacaagagttttttaacacatgattatcatgataaa 495  Q
    |||||||| ||||||||  | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29320418 tagtatatattttcctc--tgtggccactggccaaccttatctcacagcaatgtgcaagcactgtacaagagttttttaacacatgattatcatgataaa 29320515  T
Q  496 atcgtagtgcgatggtttaaagaaagctatatgtata 532  Q
    |||||||||||||||||||||||||||||||||||||    
T  29320516 atcgtagtgcgatggtttaaagaaagctatatgtata 29320552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 102 - 137
Target Start/End: Original strand, 68256 - 68291
Alignment:
Q  102 aacgaaggagaaagaaagtttagagaggagttggag 137  Q
    ||||||||||||||||||||||||||| ||||||||    
T  68256 aacgaaggagaaagaaagtttagagagaagttggag 68291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 102 - 137
Target Start/End: Original strand, 33053424 - 33053459
Alignment:
Q  102 aacgaaggagaaagaaagtttagagaggagttggag 137  Q
    ||||||||||||||||||||||||||| ||||||||    
T  33053424 aacgaaggagaaagaaagtttagagagaagttggag 33053459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000008; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 102 - 157
Target Start/End: Original strand, 17693867 - 17693919
Alignment:
Q  102 aacgaaggagaaagaaagtttagagaggagttggaggaatttgtctcactaaaaaa 157  Q
    ||||||||||||||||||||||||||| ||||||||   ||| |||||||||||||    
T  17693867 aacgaaggagaaagaaagtttagagagaagttggag---tttctctcactaaaaaa 17693919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 102 - 137
Target Start/End: Complemental strand, 10377532 - 10377497
Alignment:
Q  102 aacgaaggagaaagaaagtttagagaggagttggag 137  Q
    ||||||||||||||||||||||||||| ||||||||    
T  10377532 aacgaaggagaaagaaagtttagagagaagttggag 10377497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 102 - 137
Target Start/End: Complemental strand, 23230479 - 23230444
Alignment:
Q  102 aacgaaggagaaagaaagtttagagaggagttggag 137  Q
    ||||||||||||||||||||||||||| ||||||||    
T  23230479 aacgaaggagaaagaaagtttagagagaagttggag 23230444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 102 - 137
Target Start/End: Original strand, 31013825 - 31013860
Alignment:
Q  102 aacgaaggagaaagaaagtttagagaggagttggag 137  Q
    ||||||||||||||||||||||||||| ||||||||    
T  31013825 aacgaaggagaaagaaagtttagagagaagttggag 31013860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 102 - 137
Target Start/End: Original strand, 45446065 - 45446100
Alignment:
Q  102 aacgaaggagaaagaaagtttagagaggagttggag 137  Q
    ||||||||||||||||||||||||||| ||||||||    
T  45446065 aacgaaggagaaagaaagtttagagagaagttggag 45446100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 106 - 157
Target Start/End: Original strand, 25191324 - 25191372
Alignment:
Q  106 aaggagaaagaaagtttagagaggagttggaggaatttgtctcactaaaaaa 157  Q
    ||||||||||||||||||||||| ||||||||   ||| |||||||||||||    
T  25191324 aaggagaaagaaagtttagagagaagttggag---tttctctcactaaaaaa 25191372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 105 - 137
Target Start/End: Original strand, 27110721 - 27110753
Alignment:
Q  105 gaaggagaaagaaagtttagagaggagttggag 137  Q
    |||||||||||||||||||||||| ||||||||    
T  27110721 gaaggagaaagaaagtttagagagaagttggag 27110753  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 102 - 137
Target Start/End: Original strand, 12141564 - 12141599
Alignment:
Q  102 aacgaaggagaaagaaagtttagagaggagttggag 137  Q
    ||||||||||||||||||||||||||| ||||||||    
T  12141564 aacgaaggagaaagaaagtttagagagaagttggag 12141599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 102 - 137
Target Start/End: Original strand, 34899860 - 34899895
Alignment:
Q  102 aacgaaggagaaagaaagtttagagaggagttggag 137  Q
    ||||||||||||||||||||||||||| ||||||||    
T  34899860 aacgaaggagaaagaaagtttagagagaagttggag 34899895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 137
Target Start/End: Complemental strand, 9915981 - 9915944
Alignment:
Q  100 taaacgaaggagaaagaaagtttagagaggagttggag 137  Q
    ||||||||||||||||||||||| ||||| ||||||||    
T  9915981 taaacgaaggagaaagaaagtttggagagaagttggag 9915944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 137
Target Start/End: Complemental strand, 9923893 - 9923856
Alignment:
Q  100 taaacgaaggagaaagaaagtttagagaggagttggag 137  Q
    ||||||||||||||||||||||| ||||| ||||||||    
T  9923893 taaacgaaggagaaagaaagtttggagagaagttggag 9923856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 102 - 138
Target Start/End: Complemental strand, 24770090 - 24770054
Alignment:
Q  102 aacgaaggagaaagaaagtttagagaggagttggagg 138  Q
    |||||| |||||||||||||||||||| |||||||||    
T  24770090 aacgaatgagaaagaaagtttagagagaagttggagg 24770054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 102 - 137
Target Start/End: Original strand, 6012394 - 6012429
Alignment:
Q  102 aacgaaggagaaagaaagtttagagaggagttggag 137  Q
    ||||||||||||||||||||||||||| ||||||||    
T  6012394 aacgaaggagaaagaaagtttagagagaagttggag 6012429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 102 - 137
Target Start/End: Complemental strand, 13007061 - 13007026
Alignment:
Q  102 aacgaaggagaaagaaagtttagagaggagttggag 137  Q
    ||||||||||||||||||||||||||| ||||||||    
T  13007061 aacgaaggagaaagaaagtttagagagaagttggag 13007026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 102 - 137
Target Start/End: Complemental strand, 25979990 - 25979955
Alignment:
Q  102 aacgaaggagaaagaaagtttagagaggagttggag 137  Q
    ||||||||||||||||||||||||||| ||||||||    
T  25979990 aacgaaggagaaagaaagtttagagagaagttggag 25979955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 102 - 137
Target Start/End: Complemental strand, 38597630 - 38597595
Alignment:
Q  102 aacgaaggagaaagaaagtttagagaggagttggag 137  Q
    ||||||||||||||||||||||||||| ||||||||    
T  38597630 aacgaaggagaaagaaagtttagagagaagttggag 38597595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 102 - 137
Target Start/End: Complemental strand, 2520630 - 2520595
Alignment:
Q  102 aacgaaggagaaagaaagtttagagaggagttggag 137  Q
    ||||||||||||||||||||||||||| ||||||||    
T  2520630 aacgaaggagaaagaaagtttagagagaagttggag 2520595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 102 - 137
Target Start/End: Complemental strand, 22611037 - 22611002
Alignment:
Q  102 aacgaaggagaaagaaagtttagagaggagttggag 137  Q
    ||||||||||||||||||||||||||| ||||||||    
T  22611037 aacgaaggagaaagaaagtttagagagaagttggag 22611002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 137
Target Start/End: Original strand, 10259148 - 10259185
Alignment:
Q  100 taaacgaaggagaaagaaagtttagagaggagttggag 137  Q
    |||||||||||||||||| |||||||||| ||||||||    
T  10259148 taaacgaaggagaaagaatgtttagagagaagttggag 10259185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 104 - 137
Target Start/End: Complemental strand, 13633965 - 13633932
Alignment:
Q  104 cgaaggagaaagaaagtttagagaggagttggag 137  Q
    ||||||||||||||||||||||||| ||||||||    
T  13633965 cgaaggagaaagaaagtttagagagaagttggag 13633932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 102 - 157
Target Start/End: Original strand, 26633926 - 26633978
Alignment:
Q  102 aacgaaggagaaagaaagtttagagaggagttggaggaatttgtctcactaaaaaa 157  Q
    ||||||| ||||||||||||||||||| ||||||||   ||| |||||||||||||    
T  26633926 aacgaagaagaaagaaagtttagagagaagttggag---tttctctcactaaaaaa 26633978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 102 - 137
Target Start/End: Original strand, 6954952 - 6954987
Alignment:
Q  102 aacgaaggagaaagaaagtttagagaggagttggag 137  Q
    ||||||||||||||||||||||||||| ||||||||    
T  6954952 aacgaaggagaaagaaagtttagagagaagttggag 6954987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 102 - 137
Target Start/End: Complemental strand, 9998299 - 9998264
Alignment:
Q  102 aacgaaggagaaagaaagtttagagaggagttggag 137  Q
    ||||||||||||||||||||||||||| ||||||||    
T  9998299 aacgaaggagaaagaaagtttagagagaagttggag 9998264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 102 - 137
Target Start/End: Complemental strand, 10232903 - 10232868
Alignment:
Q  102 aacgaaggagaaagaaagtttagagaggagttggag 137  Q
    ||||||||||||||||||||||||||| ||||||||    
T  10232903 aacgaaggagaaagaaagtttagagagaagttggag 10232868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 102 - 137
Target Start/End: Complemental strand, 21431458 - 21431423
Alignment:
Q  102 aacgaaggagaaagaaagtttagagaggagttggag 137  Q
    ||||||||||||||||||||||||||| ||||||||    
T  21431458 aacgaaggagaaagaaagtttagagagaagttggag 21431423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 102 - 137
Target Start/End: Complemental strand, 40487158 - 40487123
Alignment:
Q  102 aacgaaggagaaagaaagtttagagaggagttggag 137  Q
    ||||||||||||||||||||||||||| ||||||||    
T  40487158 aacgaaggagaaagaaagtttagagagaagttggag 40487123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 102 - 137
Target Start/End: Original strand, 45568700 - 45568735
Alignment:
Q  102 aacgaaggagaaagaaagtttagagaggagttggag 137  Q
    ||||||||||||||||||||||||||| ||||||||    
T  45568700 aacgaaggagaaagaaagtttagagagaagttggag 45568735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 102 - 137
Target Start/End: Complemental strand, 47895984 - 47895949
Alignment:
Q  102 aacgaaggagaaagaaagtttagagaggagttggag 137  Q
    ||||||||||||||||||||||||||| ||||||||    
T  47895984 aacgaaggagaaagaaagtttagagagaagttggag 47895949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 102 - 137
Target Start/End: Original strand, 52923371 - 52923406
Alignment:
Q  102 aacgaaggagaaagaaagtttagagaggagttggag 137  Q
    ||||||||||||||||||||||||||| ||||||||    
T  52923371 aacgaaggagaaagaaagtttagagagaagttggag 52923406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 102 - 134
Target Start/End: Original strand, 35865189 - 35865221
Alignment:
Q  102 aacgaaggagaaagaaagtttagagaggagttg 134  Q
    ||||||||||||||||||||||||||| |||||    
T  35865189 aacgaaggagaaagaaagtttagagagaagttg 35865221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 102 - 134
Target Start/End: Complemental strand, 38545668 - 38545636
Alignment:
Q  102 aacgaaggagaaagaaagtttagagaggagttg 134  Q
    ||||||||||||||||||||||||||| |||||    
T  38545668 aacgaaggagaaagaaagtttagagagaagttg 38545636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 102 - 137
Target Start/End: Complemental strand, 7646315 - 7646280
Alignment:
Q  102 aacgaaggagaaagaaagtttagagaggagttggag 137  Q
    ||||||||||||||||||||||||||| ||||||||    
T  7646315 aacgaaggagaaagaaagtttagagagaagttggag 7646280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 102 - 137
Target Start/End: Original strand, 7678134 - 7678169
Alignment:
Q  102 aacgaaggagaaagaaagtttagagaggagttggag 137  Q
    ||||||||||||||||||||||||||| ||||||||    
T  7678134 aacgaaggagaaagaaagtttagagagaagttggag 7678169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 102 - 137
Target Start/End: Original strand, 27097661 - 27097696
Alignment:
Q  102 aacgaaggagaaagaaagtttagagaggagttggag 137  Q
    ||||||||||||||||||||||||||| ||||||||    
T  27097661 aacgaaggagaaagaaagtttagagagaagttggag 27097696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 137
Target Start/End: Original strand, 9169511 - 9169548
Alignment:
Q  100 taaacgaaggagaaagaaagtttagagaggagttggag 137  Q
    |||||||| |||||||||||||||||||| ||||||||    
T  9169511 taaacgaatgagaaagaaagtttagagagaagttggag 9169548  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 102 - 157
Target Start/End: Original strand, 31129004 - 31129056
Alignment:
Q  102 aacgaaggagaaagaaagtttagagaggagttggaggaatttgtctcactaaaaaa 157  Q
    ||||||||||||||||||||||||||| ||||| ||   ||| |||||||||||||    
T  31129004 aacgaaggagaaagaaagtttagagagaagttgaag---tttttctcactaaaaaa 31129056  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 102 - 137
Target Start/End: Original strand, 35484634 - 35484669
Alignment:
Q  102 aacgaaggagaaagaaagtttagagaggagttggag 137  Q
    ||||||||||||||||||||||||||| ||||||||    
T  35484634 aacgaaggagaaagaaagtttagagagaagttggag 35484669  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 102 - 137
Target Start/End: Complemental strand, 41177018 - 41176983
Alignment:
Q  102 aacgaaggagaaagaaagtttagagaggagttggag 137  Q
    ||||||||||||||||||||||||||| ||||||||    
T  41177018 aacgaaggagaaagaaagtttagagagaagttggag 41176983  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 102 - 134
Target Start/End: Original strand, 7337919 - 7337951
Alignment:
Q  102 aacgaaggagaaagaaagtttagagaggagttg 134  Q
    ||||||||||||||||||||||||||| |||||    
T  7337919 aacgaaggagaaagaaagtttagagagaagttg 7337951  T

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Target: scaffold0127 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0127
Description:

Target: scaffold0127; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 102 - 134
Target Start/End: Complemental strand, 15325 - 15293
Alignment:
Q  102 aacgaaggagaaagaaagtttagagaggagttg 134  Q
    ||||||||||||||||||||||||||| |||||    
T  15325 aacgaaggagaaagaaagtttagagagaagttg 15293  T

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Target: scaffold0026 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 102 - 134
Target Start/End: Original strand, 72120 - 72152
Alignment:
Q  102 aacgaaggagaaagaaagtttagagaggagttg 134  Q
    ||||||||||||||||||||||||||| |||||    
T  72120 aacgaaggagaaagaaagtttagagagaagttg 72152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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