View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8911_low_46 (Length: 526)

Name: NF8911_low_46
Description: NF8911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8911_low_46
NF8911_low_46
[»] chr3 (4 HSPs)
chr3 (17-475)||(48100724-48101182)
chr3 (21-157)||(10534589-10534725)
chr3 (17-165)||(33286146-33286294)
chr3 (17-165)||(34012536-34012684)
[»] chr1 (13 HSPs)
chr1 (17-475)||(9933442-9933900)
chr1 (25-218)||(45033382-45033575)
chr1 (78-218)||(45028534-45028674)
chr1 (25-218)||(24208754-24208947)
chr1 (470-515)||(11882709-11882754)
chr1 (470-515)||(11891895-11891940)
chr1 (470-515)||(11905506-11905551)
chr1 (21-157)||(25625025-25625161)
chr1 (473-515)||(11882661-11882703)
chr1 (21-68)||(50690260-50690307)
chr1 (469-515)||(52819108-52819154)
chr1 (470-515)||(11882469-11882514)
chr1 (470-515)||(11891703-11891748)
[»] chr8 (4 HSPs)
chr8 (17-431)||(23582636-23583050)
chr8 (17-188)||(40271700-40271871)
chr8 (17-164)||(7232694-7232841)
chr8 (17-165)||(38615414-38615562)
[»] scaffold0009 (2 HSPs)
scaffold0009 (17-236)||(30622-30841)
scaffold0009 (21-157)||(90665-90801)
[»] chr6 (3 HSPs)
chr6 (17-188)||(16593435-16593606)
chr6 (79-220)||(21878045-21878186)
chr6 (25-218)||(33164770-33164963)
[»] scaffold0134 (1 HSPs)
scaffold0134 (17-193)||(39583-39759)
[»] chr4 (4 HSPs)
chr4 (17-90)||(18392254-18392327)
chr4 (17-165)||(16657975-16658123)
chr4 (17-165)||(36648918-36649066)
chr4 (17-165)||(1852469-1852617)
[»] scaffold0169 (1 HSPs)
scaffold0169 (17-165)||(21300-21448)
[»] chr5 (2 HSPs)
chr5 (294-371)||(9991242-9991319)
chr5 (25-164)||(12183215-12183354)
[»] scaffold0163 (1 HSPs)
scaffold0163 (17-165)||(32201-32349)
[»] chr7 (1 HSPs)
chr7 (17-165)||(7083580-7083728)


Alignment Details
Target: chr3 (Bit Score: 259; Significance: 1e-144; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 17 - 475
Target Start/End: Original strand, 48100724 - 48101182
Alignment:
Q  17 catcacctacaagacgagctttataacgctcaaaacaaccattagatttctttttatgacaaaaaatccacatacagcgaataatgttaacatcacaagg 116  Q
    ||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||  ||||||||||||||    
T  48100724 catcaccgacaagacgagctttgtaacgctcaaaacaaccattagatttctttttatgacgaaaaatccacatacagcgaataacattaacatcacaagg 48100823  T
Q  117 tcgaggaaccaaatcccacgtgttatttctaataagagcattaaattcagactgcattgtggctttccaattagggttaaatagagctagtttgggattt 216  Q
    ||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | |||| || ||||| ||||||    
T  48100824 tcgtggaaccaaatcccacgtattatttctaataagagcattaaattcagactgcattgcggctttccaattagggtcagatagggcaagttttggattt 48100923  T
Q  217 ttgggaagaggtgagatggtcggatcatcaatggtaacagaaaggttaaaaaactttctaggtttgtagatatcccacatgctacgggtggccattgttc 316  Q
    |||||||||||||| || ||||||||||||||||||||||| |||||||| | |||| |||||||||||||| ||  ||||||||| |||||||| || |    
T  48100924 ttgggaagaggtgaaatagtcggatcatcaatggtaacagagaggttaaagagctttttaggtttgtagataccctgcatgctacgagtggccatagtcc 48101023  T
Q  317 gagtgggaggtgcaggttgggccaatggtgtagatgatgtggaggtatcaggtgtgtgtggtccgaccgatgaggtagacggagggtcaggtataggagg 416  Q
    |||||||||||||||| ||||| | ||| | || ||||| ||||||  ||||||| |||||||||||   ||||||||||||||||||||||||||||||    
T  48101024 gagtgggaggtgcaggctgggctagtggggcaggtgatgaggaggttccaggtgtatgtggtccgactcgtgaggtagacggagggtcaggtataggagg 48101123  T
Q  417 tggcggactaggaaggtcattggaaagaggttttaaggtgggattggtccattgatgga 475  Q
    ||  ||||| ||||||||||  |  |||||||  |||||||| || ||||| |||||||    
T  48101124 tgatggactgggaaggtcatgaggtagaggttgcaaggtggggttcgtccactgatgga 48101182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 21 - 157
Target Start/End: Original strand, 10534589 - 10534725
Alignment:
Q  21 acctacaagacgagctttataacgctcaaaacaaccattagatttctttttatgacaaaaaatccacatacagcgaataatgttaacatcacaaggtcga 120  Q
    |||||||| ||||||||| || ||||||||| |||||| ||||||||| || || |  |||||||||| ||  |||||||  ||| ||| | | || |||    
T  10534589 acctacaaaacgagctttgtatcgctcaaaagaaccatcagatttcttcttgtgcctgaaaatccacaaacttcgaataacattagcattagagggacga 10534688  T
Q  121 ggaaccaaatcccacgtgttatttctaataagagcat 157  Q
    ||||| || |||||||| ||||||  |||||||||||    
T  10534689 ggaactaattcccacgtcttattttcaataagagcat 10534725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 165
Target Start/End: Complemental strand, 33286294 - 33286146
Alignment:
Q  17 catcacctacaagacgagctttataacgctcaaaacaaccattagatttctttttatgac-aaaaaatccacatacagcgaataatgttaacatcacaag 115  Q
    ||||||||||||| || |||||||  | ||||||  |||||| ||| || | |||||| | |||||||||||||| |  |||||||||||||||||   |    
T  33286294 catcacctacaagtcgggctttatgcctctcaaatgaaccatcagagttttctttatgtctaaaaaatccacatagattgaataatgttaacatcaggtg 33286195  T
Q  116 gtcgaggaaccaaatcccacgtgttatttctaataagagcattaaattca 165  Q
    |||| || || ||||| ||||| | |||| |||| ||||||||| |||||    
T  33286194 gtcgtggtactaaatctcacgtctcattt-taattagagcattatattca 33286146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 17 - 165
Target Start/End: Complemental strand, 34012684 - 34012536
Alignment:
Q  17 catcacctacaagacgagctttataacgctcaaaacaaccattagatttctttttatgacaaaaaatccacatacagcgaataatgttaacatcacaagg 116  Q
    ||||||||||||| || |||||||  | |||||||  ||| | |||||| | |||||| | ||||||||||||  | |||||||  |||||||||   ||    
T  34012684 catcacctacaagtcgggctttatgcctctcaaaagtaccgtcagatttttctttatgtctaaaaatccacatggaccgaataacattaacatcaggtgg 34012585  T
Q  117 tcgaggaaccaaatcccacgtgttatttctaataagagcattaaattca 165  Q
    |||||| || |  ||||||||  ||||| |||| ||||||||| |||||    
T  34012584 tcgaggtactaggtcccacgtcctatttttaattagagcattatattca 34012536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 259; Significance: 1e-144; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 17 - 475
Target Start/End: Original strand, 9933442 - 9933900
Alignment:
Q  17 catcacctacaagacgagctttataacgctcaaaacaaccattagatttctttttatgacaaaaaatccacatacagcgaataatgttaacatcacaagg 116  Q
    ||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||  ||||||||||||||    
T  9933442 catcaccgacaagacgagctttgtaacgctcaaaacaaccattagatttctttttatgacgaaaaatccacatacagcgaataacattaacatcacaagg 9933541  T
Q  117 tcgaggaaccaaatcccacgtgttatttctaataagagcattaaattcagactgcattgtggctttccaattagggttaaatagagctagtttgggattt 216  Q
    ||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | |||| || ||||| ||||||    
T  9933542 tcgtggaaccaaatcccacgtattatttctaataagagcattaaattcagactgcattgcggctttccaattagggtcagatagggcaagttttggattt 9933641  T
Q  217 ttgggaagaggtgagatggtcggatcatcaatggtaacagaaaggttaaaaaactttctaggtttgtagatatcccacatgctacgggtggccattgttc 316  Q
    |||||||||||||| || ||||||||||||||||||||||| |||||||| | |||| |||||||||||||| ||  ||||||||| |||||||| || |    
T  9933642 ttgggaagaggtgaaatagtcggatcatcaatggtaacagagaggttaaagagctttttaggtttgtagataccctgcatgctacgagtggccatagtcc 9933741  T
Q  317 gagtgggaggtgcaggttgggccaatggtgtagatgatgtggaggtatcaggtgtgtgtggtccgaccgatgaggtagacggagggtcaggtataggagg 416  Q
    |||||||||||||||| ||||| | ||| | || ||||| ||||||  ||||||| |||||||||||   ||||||||||||||||||||||||||||||    
T  9933742 gagtgggaggtgcaggctgggctagtggggcaggtgatgaggaggttccaggtgtatgtggtccgactcgtgaggtagacggagggtcaggtataggagg 9933841  T
Q  417 tggcggactaggaaggtcattggaaagaggttttaaggtgggattggtccattgatgga 475  Q
    ||  ||||| ||||||||||  |  |||||||  |||||||| || ||||| |||||||    
T  9933842 tgatggactgggaaggtcatgaggtagaggttgcaaggtggggttcgtccactgatgga 9933900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 25 - 218
Target Start/End: Complemental strand, 45033575 - 45033382
Alignment:
Q  25 acaagacgagctttataacgctcaaaacaaccattagatttctttttatgacaaaaaatccacatacagcgaataatgttaacatcacaaggtcgaggaa 124  Q
    ||||| ||||| ||||| ||||||||| | |||| | | || || |||||   ||||||||||||||| |||||||  ||| |||| | ||| |||||||    
T  45033575 acaaggcgagccttatagcgctcaaaagacccatcataatttttcttatgtttaaaaatccacatacatcgaataagattagcatctctagggcgaggaa 45033476  T
Q  125 ccaaatcccacgtgttatttctaataagagcattaaattcagactgcattgtggctttccaattagggttaaatagagctagtttgggattttt 218  Q
    | ||||||||||| |||||||||||||| |||| ||| ||||| ||||||| || ||||||||| ||||   |||  ||||||||| |||||||    
T  45033475 ctaaatcccacgtcttatttctaataagtgcatcaaactcagattgcattgcggatttccaattcgggtccgataaggctagtttgtgattttt 45033382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 78 - 218
Target Start/End: Complemental strand, 45028674 - 45028534
Alignment:
Q  78 aaaaatccacatacagcgaataatgttaacatcacaaggtcgaggaaccaaatcccacgtgttatttctaataagagcattaaattcagactgcattgtg 177  Q
    ||||||||||||||| |||||||  ||| |||| | ||| |||||||| ||||||||||| |||||||||||||| |||| ||| ||||| ||||||| |    
T  45028674 aaaaatccacatacatcgaataagattagcatctctagggcgaggaactaaatcccacgtcttatttctaataagtgcatcaaactcagattgcattgcg 45028575  T
Q  178 gctttccaattagggttaaatagagctagtttgggattttt 218  Q
    | ||||||||| ||||   |||  ||||||||| |||||||    
T  45028574 gatttccaattcgggtacgataaggctagtttgtgattttt 45028534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 25 - 218
Target Start/End: Complemental strand, 24208947 - 24208754
Alignment:
Q  25 acaagacgagctttataacgctcaaaacaaccattagatttctttttatgacaaaaaatccacatacagcgaataatgttaacatcacaaggtcgaggaa 124  Q
    ||||| ||||| ||||| ||||||||| | |||| ||| || || |||||   ||||||||||||||| |||||||  ||| |||| | ||| |||||||    
T  24208947 acaaggcgagccttatagcgctcaaaagacccatcagaatttttcttatgtttaaaaatccacatacatcgaataagattagcatctctagggcgaggaa 24208848  T
Q  125 ccaaatcccacgtgttatttctaataagagcattaaattcagactgcattgtggctttccaattagggttaaatagagctagtttgggattttt 218  Q
    | ||||||||| | |||||||||||||| |||| ||| ||||| |||||||  | ||||||||| ||||   |||  ||||||||| |||||||    
T  24208847 ctaaatcccacatcttatttctaataagtgcatcaaactcagattgcattgcagatttccaattcgggtccgataaggctagtttgtgattttt 24208754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 470 - 515
Target Start/End: Complemental strand, 11882754 - 11882709
Alignment:
Q  470 gatggaggtgggggagatttgtaatagtaaggaggtggcggtgatg 515  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  11882754 gatggaggtgggggagatttgtaatagtaaggaggtggcggtgatg 11882709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 470 - 515
Target Start/End: Complemental strand, 11891940 - 11891895
Alignment:
Q  470 gatggaggtgggggagatttgtaatagtaaggaggtggcggtgatg 515  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  11891940 gatggaggtgggggagatttgtaatagtaaggaggtggcggtgatg 11891895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 470 - 515
Target Start/End: Complemental strand, 11905551 - 11905506
Alignment:
Q  470 gatggaggtgggggagatttgtaatagtaaggaggtggcggtgatg 515  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  11905551 gatggaggtgggggagatttgtaatagtaaggaggtggcggtgatg 11905506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 21 - 157
Target Start/End: Original strand, 25625025 - 25625161
Alignment:
Q  21 acctacaagacgagctttataacgctcaaaacaaccattagatttctttttatgacaaaaaatccacatacagcgaataatgttaacatcacaaggtcga 120  Q
    |||||||||||||||||| || ||||| ||| |||||| ||||||||| || || |  |||||||||| ||  |||||||  ||| ||| | | || |||    
T  25625025 acctacaagacgagctttgtatcgctccaaagaaccatcagatttcttcttgtgcctgaaaatccacaaacttcgaataacattagcattagagggacga 25625124  T
Q  121 ggaaccaaatcccacgtgttatttctaataagagcat 157  Q
    ||||| || |||||||| ||||||  |||||||||||    
T  25625125 ggaactaattcccacgtcttattttcaataagagcat 25625161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 473 - 515
Target Start/End: Complemental strand, 11882703 - 11882661
Alignment:
Q  473 ggaggtgggggagatttgtaatagtaaggaggtggcggtgatg 515  Q
    |||||||| || |||||||||||||||||||||||||||||||    
T  11882703 ggaggtggaggtgatttgtaatagtaaggaggtggcggtgatg 11882661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 21 - 68
Target Start/End: Complemental strand, 50690307 - 50690260
Alignment:
Q  21 acctacaagacgagctttataacgctcaaaacaaccattagatttctt 68  Q
    |||||||||||||||||| |||||||||||  |||||| |||||||||    
T  50690307 acctacaagacgagctttgtaacgctcaaatgaaccatcagatttctt 50690260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 469 - 515
Target Start/End: Original strand, 52819108 - 52819154
Alignment:
Q  469 tgatggaggtgggggagatttgtaatagtaaggaggtggcggtgatg 515  Q
    |||||| ||||||||||||||||||||||| ||||| || |||||||    
T  52819108 tgatggcggtgggggagatttgtaatagtatggagggggaggtgatg 52819154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 470 - 515
Target Start/End: Complemental strand, 11882514 - 11882469
Alignment:
Q  470 gatggaggtgggggagatttgtaatagtaaggaggtggcggtgatg 515  Q
    ||||| ||||| || ||||||||||||||||||||||| |||||||    
T  11882514 gatggtggtggaggtgatttgtaatagtaaggaggtggtggtgatg 11882469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 470 - 515
Target Start/End: Complemental strand, 11891748 - 11891703
Alignment:
Q  470 gatggaggtgggggagatttgtaatagtaaggaggtggcggtgatg 515  Q
    ||||| ||||| || ||||||||||||||||||||||| |||||||    
T  11891748 gatggtggtggaggtgatttgtaatagtaaggaggtggtggtgatg 11891703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 243; Significance: 1e-134; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 17 - 431
Target Start/End: Complemental strand, 23583050 - 23582636
Alignment:
Q  17 catcacctacaagacgagctttataacgctcaaaacaaccattagatttctttttatgacaaaaaatccacatacagcgaataatgttaacatcacaagg 116  Q
    |||||||||||||||||||||| |||||||| |||||||||||||||||||||| ||||  ||||||||| ||||| |||||||| ||||||||||||||    
T  23583050 catcacctacaagacgagctttgtaacgctcgaaacaaccattagatttcttttgatgaagaaaaatccatatacatcgaataatattaacatcacaagg 23582951  T
Q  117 tcgaggaaccaaatcccacgtgttatttctaataagagcattaaattcagactgcattgtggctttccaattagggttaaatagagctagtttgggattt 216  Q
    ||| ||||||||| ||||| ||||| || ||||||||||||||||||||||||||||||  |||||||||||||||| |||||| |||||||||| ||||    
T  23582950 tcgtggaaccaaaacccacatgttaattataataagagcattaaattcagactgcattgcagctttccaattagggtcaaatagggctagtttggaattt 23582851  T
Q  217 ttgggaagaggtgagatggtcggatcatcaatggtaacagaaaggttaaaaaactttctaggtttgtagatatcccacatgctacgggtggccattgttc 316  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||  |||||||||||| ||||| | | |||||||||||||||||||||||    
T  23582850 ttgggaagaggggagatggtcggatcatcaatggtaacagaaaggttaaaaagatttctaggtttgcagatacctcgcatgctacgggtggccattgttc 23582751  T
Q  317 gagtgggaggtgcaggttgggccaatggtgtagatgatgtggaggtatcaggtgtgtgtggtccgaccgatgaggtagacggagggtcaggtataggagg 416  Q
    ||||| ||||||||||||||| |||| |||||| |||||  ||||||||| |||| || |||||| ||  ||||||||   |||||| |||||||||||     
T  23582750 gagtgcgaggtgcaggttggggcaattgtgtaggtgatggagaggtatcaagtgtatgcggtccggccagtgaggtaggtagagggttaggtataggagt 23582651  T
Q  417 tggcggactaggaag 431  Q
    ||||||||| |||||    
T  23582650 tggcggactgggaag 23582636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 17 - 188
Target Start/End: Original strand, 40271700 - 40271871
Alignment:
Q  17 catcacctacaagacgagctttataacgctcaaaacaaccattagatttctttttatgacaaaaaatccacatacagcgaataatgttaacatcacaagg 116  Q
    ||||||||||||||||||||||||||||||||||  | |||| ||| || || ||||| | ||||||||||||||| |||||||  ||| ||||||||||    
T  40271700 catcacctacaagacgagctttataacgctcaaaggagccatcagaatttttcttatgcctaaaaatccacatacatcgaataagattagcatcacaagg 40271799  T
Q  117 tcgaggaaccaaatcccacgtgttatttctaataagagcattaaattcagactgcattgtggctttccaatt 188  Q
     |||||||| ||||||||||| |||||||||||||| |||| ||| ||||| ||||||| || |||||||||    
T  40271800 acgaggaactaaatcccacgtcttatttctaataagtgcatcaaactcagattgcattgcggatttccaatt 40271871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 17 - 164
Target Start/End: Original strand, 7232694 - 7232841
Alignment:
Q  17 catcacctacaagacgagctttataacgctcaaaacaaccattagatttctttttatgacaaaaaatccacatacagcgaataatgttaacatcacaagg 116  Q
    ||||||||||||| ||||||||||| | ||||||  | ||||  ||||||||||| ||||  || ||||||||| |||||||||  |||||||     ||    
T  7232694 catcacctacaagtcgagctttatacctctcaaatgacccatctgatttctttttgtgacggaatatccacatagagcgaataaaattaacattttgtgg 7232793  T
Q  117 tcgaggaaccaaatcccacgtgttatttctaataagagcattaaattc 164  Q
     ||||| ||||| ||||| || |||||| |||||||||||| ||||||    
T  7232794 acgaggtaccaattcccatgtcttatttttaataagagcatcaaattc 7232841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 17 - 165
Target Start/End: Original strand, 38615414 - 38615562
Alignment:
Q  17 catcacctacaagacgagctttataacgctcaaaacaaccattagatttctttttatgacaaaaaatccacatacagcgaataatgttaacatcacaagg 116  Q
    ||||||||||||| || |||||||  | |||||||  ||| | |||||| | |||||| | ||||||||||||  | |||||||  |||||||||   ||    
T  38615414 catcacctacaagtcgggctttatgcctctcaaaagtaccgtcagatttttctttatgtctaaaaatccacatggaccgaataacattaacatcaggtgg 38615513  T
Q  117 tcgaggaaccaaatcccacgtgttatttctaataagagcattaaattca 165  Q
    |||||| || |  ||||||||  ||||| |||| ||||||||| |||||    
T  38615514 tcgaggtactaggtcccacgtcctatttttaattagagcattatattca 38615562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 88; Significance: 5e-42; HSPs: 2)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 17 - 236
Target Start/End: Complemental strand, 30841 - 30622
Alignment:
Q  17 catcacctacaagacgagctttataacgctcaaaacaaccattagatttctttttatgacaaaaaatccacatacagcgaataatgttaacatcacaagg 116  Q
    |||||||||| |||||||||||||||||||||||| | |||| ||| || || ||||| | ||||||||||||| | |||||||  ||| ||||||||||    
T  30841 catcacctactagacgagctttataacgctcaaaagagccatcagaatttttcttatgcctaaaaatccacataaatcgaataagattagcatcacaagg 30742  T
Q  117 tcgaggaaccaaatcccacgtgttatttctaataagagcattaaattcagactgcattgtggctttccaattagggttaaatagagctagtttgggattt 216  Q
     |||||||| ||||||||||| ||||||| ||||||||||| ||||||||| ||||||| || ||||||||| ||||   |||  ||||||||||| |||    
T  30741 acgaggaactaaatcccacgtcttatttcgaataagagcatcaaattcagattgcattgcggatttccaattcgggtctgataaggctagtttggggttt 30642  T
Q  217 ttgggaagaggtgagatggt 236  Q
    || || || || ||||||||    
T  30641 ttaggtaggggagagatggt 30622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 21 - 157
Target Start/End: Complemental strand, 90801 - 90665
Alignment:
Q  21 acctacaagacgagctttataacgctcaaaacaaccattagatttctttttatgacaaaaaatccacatacagcgaataatgttaacatcacaaggtcga 120  Q
    |||||||||||||||||| || ||||||||| || ||| ||||||||| || || |  |||||||||| ||  |||||||  ||| ||| | | || |||    
T  90801 acctacaagacgagctttgtatcgctcaaaagaaacatcagatttcttcttgtgcctgaaaatccacaaacttcgaataacattagcattagagggacga 90702  T
Q  121 ggaaccaaatcccacgtgttatttctaataagagcat 157  Q
    ||||| || |||||||| ||||||  |||||||||||    
T  90701 ggaactaattcccacgtcttattttcaataagagcat 90665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 84; Significance: 1e-39; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 17 - 188
Target Start/End: Complemental strand, 16593606 - 16593435
Alignment:
Q  17 catcacctacaagacgagctttataacgctcaaaacaaccattagatttctttttatgacaaaaaatccacatacagcgaataatgttaacatcacaagg 116  Q
    ||||||||||||||||||||||||| ||||||||  | |||| ||| || || ||||| | ||||||||||||||| |||||||  ||| ||||||||||    
T  16593606 catcacctacaagacgagctttatagcgctcaaaggagccatcagaatttttcttatgcctaaaaatccacatacatcgaataagattagcatcacaagg 16593507  T
Q  117 tcgaggaaccaaatcccacgtgttatttctaataagagcattaaattcagactgcattgtggctttccaatt 188  Q
     |||||||| ||||||||||| |||||||||||||| |||| ||||||||| ||||||| || |||||||||    
T  16593506 acgaggaactaaatcccacgtcttatttctaataagtgcatcaaattcagattgcattgcggatttccaatt 16593435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 79 - 220
Target Start/End: Original strand, 21878045 - 21878186
Alignment:
Q  79 aaaatccacatacagcgaataatgttaacatcacaaggtcgaggaaccaaatcccacgtgttatttctaataagagcattaaattcagactgcattgtgg 178  Q
    ||||| |||||| || |||||||||||||||||||||||||  ||| || ||||||| | |||||||||||||||  |||||| ||||||||||||||||    
T  21878045 aaaattcacatatagtgaataatgttaacatcacaaggtcggagaatcagatcccacatattatttctaataagaatattaaaatcagactgcattgtgg 21878144  T
Q  179 ctttccaattagggttaaatagagctagtttgggatttttgg 220  Q
     |||||||||| ||||| |||| |||| |||| | |||||||    
T  21878145 atttccaattatggttatatagggctaatttgaggtttttgg 21878186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 25 - 218
Target Start/End: Complemental strand, 33164963 - 33164770
Alignment:
Q  25 acaagacgagctttataacgctcaaaacaaccattagatttctttttatgacaaaaaatccacatacagcgaataatgttaacatcacaaggtcgaggaa 124  Q
    ||||| ||||| ||||| ||||||||| | |||| | | || || |||||   ||||||||||||||| |||||||  ||| |||| | ||| |||||||    
T  33164963 acaaggcgagccttatagcgctcaaaagacccatcaaaatttttcttatgtttaaaaatccacatacatcgaataagattagcatctctagggcgaggaa 33164864  T
Q  125 ccaaatcccacgtgttatttctaataagagcattaaattcagactgcattgtggctttccaattagggttaaatagagctagtttgggattttt 218  Q
    | ||||||||| | |||||||||||||| |||| ||| ||||| |||||||  | ||||||||| ||||   |||  ||||||||| |||||||    
T  33164863 ctaaatcccacatcttatttctaataagtgcatcaaactcagattgcattgcagatttccaattcgggtccgataaggctagtttgtgattttt 33164770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0134 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: scaffold0134
Description:

Target: scaffold0134; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 17 - 193
Target Start/End: Complemental strand, 39759 - 39583
Alignment:
Q  17 catcacctacaagacgagctttataacgctcaaaacaaccattagatttctttttatgacaaaaaatccacatacagcgaataatgttaacatcacaagg 116  Q
    |||||| |||||||||||| ||||| ||| ||||  | |||| | | || || |||||   ||||||||||||||| ||||||| |||| | || | |||    
T  39759 catcacatacaagacgagccttatagcgcgcaaatgagccatcaaaatttttcttatgtttaaaaatccacatacatcgaataaggttagcgtccccagg 39660  T
Q  117 tcgaggaaccaaatcccacgtgttatttctaataagagcattaaattcagactgcattgtggctttccaattagggt 193  Q
     || ||||| ||||||||||| ||||||||||||||||||| ||||||||| ||||||| || ||||||||| ||||    
T  39659 acgcggaactaaatcccacgtcttatttctaataagagcatcaaattcagattgcattgcggatttccaattcgggt 39583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 17 - 90
Target Start/End: Complemental strand, 18392327 - 18392254
Alignment:
Q  17 catcacctacaagacgagctttataacgctcaaaacaaccattagatttctttttatgacaaaaaatccacata 90  Q
    |||||||||||||||| |||||||  | ||||||| ||| ||||||||||| |||||| | |||||||||||||    
T  18392327 catcacctacaagacgggctttatgcctctcaaaagaacaattagatttctctttatgtctaaaaatccacata 18392254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 17 - 165
Target Start/End: Original strand, 16657975 - 16658123
Alignment:
Q  17 catcacctacaagacgagctttataacgctcaaaacaaccattagatttctttttatgacaaaaaatccacatacagcgaataatgttaacatcacaagg 116  Q
    ||||||||||||| || |||||||  | ||||||  |||||| ||| || | |||||| | ||||||||||||| | ||||||| ||||| ||||   ||    
T  16657975 catcacctacaagtcgggctttatgcctctcaaatgaaccatcagagttttctttatgtctaaaaatccacatagatcgaataacgttaatatcaggtgg 16658074  T
Q  117 tcgaggaaccaaatcccacgtgttatttctaataagagcattaaattca 165  Q
    ||| || || ||||||||||| | |||| |||| ||||||||| |||||    
T  16658075 tcgtggtactaaatcccacgtctcatttttaattagagcattatattca 16658123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 17 - 165
Target Start/End: Complemental strand, 36649066 - 36648918
Alignment:
Q  17 catcacctacaagacgagctttataacgctcaaaacaaccattagatttctttttatgacaaaaaatccacatacagcgaataatgttaacatcacaagg 116  Q
    |||||||||||||||| || ||||| | |||||||  ||||| |||||| | |||||||   |||||||||||| | ||||| |  || ||||||   ||    
T  36649066 catcacctacaagacgggccttatacctctcaaaaacaccatcagatttttctttatgagtgaaaatccacatagaccgaatcacatttacatcaggtgg 36648967  T
Q  117 tcgaggaaccaaatcccacgtgttatttctaataagagcattaaattca 165  Q
     || || ||||| |||||||| |||||| |||||||||| |||||||||    
T  36648966 acggggcaccaactcccacgtcttatttttaataagagcgttaaattca 36648918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 17 - 165
Target Start/End: Complemental strand, 1852617 - 1852469
Alignment:
Q  17 catcacctacaagacgagctttataacgctcaaaacaaccattagatttctttttatgacaaaaaatccacatacagcgaataatgttaacatcacaagg 116  Q
    |||||||||||||||| || ||||| | |||||||  ||||| |||||| | |||||||   |||||||||||| | ||||| |  || ||||||   ||    
T  1852617 catcacctacaagacgggccttatacctctcaaaaacaccatcagatttttctttatgagtgaaaatccacatagaccgaatcacatttacatcaggtgg 1852518  T
Q  117 tcgaggaaccaaatcccacgtgttatttctaataagagcattaaattca 165  Q
     || || ||||| |||||||| |||||| |||||||||| || ||||||    
T  1852517 acggggcaccaactcccacgtcttatttttaataagagcgtttaattca 1852469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0169 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0169
Description:

Target: scaffold0169; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 17 - 165
Target Start/End: Complemental strand, 21448 - 21300
Alignment:
Q  17 catcacctacaagacgagctttataacgctcaaaacaaccattagatttctttttatgacaaaaaatccacatacagcgaataatgttaacatcacaagg 116  Q
    |||||||||||||||| || ||||| | |||||||  ||||| |||||| | |||||||   |||||||||||| | ||||| |  || ||||||   ||    
T  21448 catcacctacaagacgggccttatacctctcaaaaacaccatcagatttttctttatgagtgaaaatccacatagaccgaatcacatttacatcaggtgg 21349  T
Q  117 tcgaggaaccaaatcccacgtgttatttctaataagagcattaaattca 165  Q
     || || ||||| |||||||| |||||| |||||||||| |||||||||    
T  21348 acggggcaccaactcccacgtcttatttttaataagagcgttaaattca 21300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 294 - 371
Target Start/End: Original strand, 9991242 - 9991319
Alignment:
Q  294 catgctacgggtggccattgttcgagtgggaggtgcaggttgggccaatggtgtagatgatgtggaggtatcaggtgt 371  Q
    |||||||| |||||||||  | | ||| || |||||| |||||||||||||||||| ||||| |||||||||| ||||    
T  9991242 catgctacaggtggccataatccaagtaggtggtgcaagttgggccaatggtgtaggtgatgaggaggtatcatgtgt 9991319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 25 - 164
Target Start/End: Original strand, 12183215 - 12183354
Alignment:
Q  25 acaagacgagctttataacgctcaaaacaaccattagatttctttttatgacaaaaaatccacatacagcgaataatgttaacatcacaaggtcgaggaa 124  Q
    ||||||||||| ||||| ||||| |||  ||| |||||||| | ||| ||   ||||| ||| ||||| ||| |||| |||||||||  ||| || ||||    
T  12183215 acaagacgagccttataccgctccaaatcaccgttagatttatatttgtgtttaaaaaaccaaatacatcgagtaatattaacatcaggaggacggggaa 12183314  T
Q  125 ccaaatcccacgtgttatttctaataagagcattaaattc 164  Q
    ||||  |||| || |||||| |||||||||||| ||||||    
T  12183315 ccaagacccaagtcttatttttaataagagcatcaaattc 12183354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0163 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0163
Description:

Target: scaffold0163; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 17 - 165
Target Start/End: Original strand, 32201 - 32349
Alignment:
Q  17 catcacctacaagacgagctttataacgctcaaaacaaccattagatttctttttatgacaaaaaatccacatacagcgaataatgttaacatcacaagg 116  Q
    ||||||||||||| |  |||||||  | ||||||  |||||| ||| || | |||||| | ||||||||||||| | ||||||| ||||||||||   ||    
T  32201 catcacctacaagtcaggctttatgcctctcaaatgaaccatcagagttttctttatgtctaaaaatccacatagatcgaataacgttaacatcaggtgg 32300  T
Q  117 tcgaggaaccaaatcccacgtgttatttctaataagagcattaaattca 165  Q
    ||| || || ||||| ||||| | |||| |||| ||||||||| |||||    
T  32301 tcgtggtactaaatctcacgtctcatttttaattagagcattatattca 32349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 17 - 165
Target Start/End: Complemental strand, 7083728 - 7083580
Alignment:
Q  17 catcacctacaagacgagctttataacgctcaaaacaaccattagatttctttttatgacaaaaaatccacatacagcgaataatgttaacatcacaagg 116  Q
    |||||||||||||||| || ||||| | |||||||  ||||| |||||| | |||||||   |||||||||||| | ||||| |  || ||||||   ||    
T  7083728 catcacctacaagacgggccttatacctctcaaaaacaccatcagatttttctttatgagtgaaaatccacatagaccgaatcacatttacatcaggtgg 7083629  T
Q  117 tcgaggaaccaaatcccacgtgttatttctaataagagcattaaattca 165  Q
     || || ||||| |||||||| |||||  |||||||||| |||||||||    
T  7083628 acggggcaccaactcccacgtcttattcttaataagagcgttaaattca 7083580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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