View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8911_low_47 (Length: 516)
Name: NF8911_low_47
Description: NF8911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8911_low_47 |
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Alignment Details
Target: chr5 (Bit Score: 350; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 19 - 509
Target Start/End: Complemental strand, 36435466 - 36434978
Alignment:
| Q |
19 |
tatatagtatagatagatatttcatcggtggaaatcatatgtataaatttgcatcagactatgtatttgtaacgatgataattaagcttttccaaaaaa- |
117 |
Q |
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||||||||||||||||||||||| |||| |||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
36435466 |
tatatagtatagatagatatttcttcgggagaaatcat--gtataaatttgcatcagactatgtatttgtaacgatgattattaagcttttccaaaaaaa |
36435369 |
T |
|
| Q |
118 |
tgatgaatgcgttatcatgtgtattccgttcttacctctccttttaaatttacggatgatatttctataaaaattcatcgataaagtacattgaactgac |
217 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
36435368 |
tgatgaatgcgttataatgtgtattccgttcttacctctccttttaaatttacggatgatatttctataaaaattcatcgataaagtacattaaactgac |
36435269 |
T |
|
| Q |
218 |
gaacgaagaagtacaactcttacaaacaacatcaaagaaagacttataccctaataaatatgattattgaatctatatggtttatgcacccaatcacgtg |
317 |
Q |
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| T |
36435268 |
gaacgaagaagtacaactcttacaaacaacatcaaagaaagacttataccctaataaatatgattattgaatctatatggtttatgcacccaatcatgtg |
36435169 |
T |
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| Q |
318 |
aacactagttactaattacgggttagtgatttgagacatcacgtgcaacccccatgaggataccacatcccaatcatccaaccacccctttgannnnnnn |
417 |
Q |
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| T |
36435168 |
aacactaattactaattacgggttagtgatttgagacatcacgtgcaacccccatgaggataccacaccccaatcatccaaccacccctttgaatttatt |
36435069 |
T |
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| Q |
418 |
nnnnnnnnnnnnnnnnnnaccctaacctaattgttagaacttagaagttagaagacaatcactccttcccactatcaaaacaataacaccaa |
509 |
Q |
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| T |
36435068 |
ttattttatttatatttaaccctaacctaattgttagaacttagaagttagaagacaatcactcctccccactatc-aaacaataacaccaa |
36434978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 59 - 324
Target Start/End: Complemental strand, 36411067 - 36410804
Alignment:
| Q |
59 |
gtataaatttgcatcagactatgtatttgtaacgatgataattaagcttttccaaaaaatgat-gaatgcgttatcatgtgtattccgttcttacctctc |
157 |
Q |
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|||||||||||||| |||||||||||||||||||||||||| |||||||||||||| | ||||| |||||||||||||||| || ||||||| | |
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| T |
36411067 |
gtataaatttgcataagactatgtatttgtaacgatgataa----gcttttccaaaaaaaaaaagaatgttttatcatgtgtattccattattacctcac |
36410972 |
T |
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| Q |
158 |
cttttaaatttacggatgatatttctata--aaaattcatcgataaagtacattgaactgacgaacgaagaagtacaactcttaca-aacaacatcaaag |
254 |
Q |
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| T |
36410971 |
cttttatatttatggatgataattatatataaaaaaacaccgataatatgcaattaactgacgaacgaagaagtgcaactcttacgcaacaaaatcaaag |
36410872 |
T |
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| Q |
255 |
aaagacttataccctaataaatatgattattgaatctatatggtttatgcacccaatcacgtgaacacta |
324 |
Q |
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| T |
36410871 |
aaagacttataccctactcaat--gattattgaatctatatggtttatgcacccaatcatgtgaacacta |
36410804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 19 - 187
Target Start/End: Complemental strand, 36445366 - 36445211
Alignment:
| Q |
19 |
tatatagtatagatagatatttcatcggtggaaatcatatgtataaatttgcatcagactatgtatttgtaacgatgataattaagcttttccaaaaaat |
118 |
Q |
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||||||||||||||||||||||| |||| |||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| |
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| T |
36445366 |
tatatagtatagatagatatttcttcgggagaaatcat--gtataaatttgcatcagactatgtatttgtaatgatga----taagcttttccaaaaaat |
36445273 |
T |
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| Q |
119 |
gatgaatgcgttatcatgtgtattccgttcttacctctccttttaaatttacggatgatatttctataa |
187 |
Q |
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|||||||| |||||| ||| || ||||||||| ||||||||||| |||||| |||||||||| |
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| T |
36445272 |
gatgaatgtgttatcttgt-------cttattacctctctttttaaatttatggatgagatttctataa |
36445211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 19 - 187
Target Start/End: Complemental strand, 36467835 - 36467680
Alignment:
| Q |
19 |
tatatagtatagatagatatttcatcggtggaaatcatatgtataaatttgcatcagactatgtatttgtaacgatgataattaagcttttccaaaaaat |
118 |
Q |
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||||||||||||||||||||||| |||| |||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| |
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| T |
36467835 |
tatatagtatagatagatatttcttcgggagaaatcat--gtataaatttgcatcagactatgtatttgtaatgatga----taagcttttccaaaaaat |
36467742 |
T |
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| Q |
119 |
gatgaatgcgttatcatgtgtattccgttcttacctctccttttaaatttacggatgatatttctataa |
187 |
Q |
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|||||||| |||||| ||| || ||||||||| ||||||||||| |||||| |||||||||| |
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| T |
36467741 |
gatgaatgtgttatcttgt-------cttattacctctctttttaaatttatggatgagatttctataa |
36467680 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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