View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8911_low_49 (Length: 506)

Name: NF8911_low_49
Description: NF8911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8911_low_49
NF8911_low_49
[»] chr4 (28 HSPs)
chr4 (131-495)||(27446102-27446460)
chr4 (1-140)||(27505488-27505627)
chr4 (130-493)||(27559070-27559423)
chr4 (7-126)||(27480131-27480250)
chr4 (4-140)||(27487201-27487337)
chr4 (130-495)||(27556199-27556564)
chr4 (26-140)||(27523213-27523327)
chr4 (31-140)||(27525929-27526037)
chr4 (33-140)||(27474094-27474200)
chr4 (16-137)||(27460696-27460811)
chr4 (6-81)||(27476928-27477002)
chr4 (324-472)||(27424528-27424676)
chr4 (324-466)||(27502821-27502963)
chr4 (21-79)||(27513558-27513615)
chr4 (324-473)||(27414318-27414467)
chr4 (130-247)||(27438935-27439052)
chr4 (26-140)||(27469675-27469783)
chr4 (80-140)||(27513641-27513701)
chr4 (323-473)||(27571600-27571750)
chr4 (309-466)||(27513775-27513932)
chr4 (309-466)||(27526111-27526268)
chr4 (337-400)||(27475606-27475669)
chr4 (337-400)||(27514941-27515004)
chr4 (380-466)||(17970283-17970369)
chr4 (31-113)||(27467061-27467142)
chr4 (310-400)||(27503972-27504062)
chr4 (21-86)||(27500158-27500222)
chr4 (92-140)||(27502011-27502060)
[»] chr3 (12 HSPs)
chr3 (378-472)||(50913474-50913568)
chr3 (428-472)||(38035033-38035077)
chr3 (357-472)||(38032260-38032375)
chr3 (339-466)||(50911898-50912025)
chr3 (380-466)||(38028836-38028922)
chr3 (378-472)||(38038525-38038619)
chr3 (380-466)||(38040151-38040237)
chr3 (310-466)||(38024875-38025031)
chr3 (310-466)||(38031327-38031483)
chr3 (331-459)||(38043894-38044022)
chr3 (349-453)||(55082744-55082848)
chr3 (414-466)||(55084770-55084822)
[»] chr8 (1 HSPs)
chr8 (378-472)||(21608235-21608329)
[»] chr2 (1 HSPs)
chr2 (380-466)||(3073553-3073639)


Alignment Details
Target: chr4 (Bit Score: 322; Significance: 0; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 131 - 495
Target Start/End: Complemental strand, 27446460 - 27446102
Alignment:
Q  131 tcaaatatctctgttcataactgtctcggttggatggcatttcagcttagaaacgaatgaaaaatgaaagtgtatgctgtacaatttggcttaactaact 230  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  27446460 tcaaatatctctgttcataactgtctcggttggatggcatttcagcttagaaacgaatgaaaaatgaaagtgtatgctgtacaatttgtcttaactaact 27446361  T
Q  231 aatatctatgtaagtctcctttaatgagatttaacattgaagcacgaagtgtgttctaagaaaacatcttcactgcaactgcaaggaatcaagagaccat 330  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      |||||||||| |||||||||    
T  27446360 aatatctatgtaagtctcctttaatgagatttaacattgaagcacgaagtgtgttctaagaaaacatcttcact------gcaaggaatcgagagaccat 27446267  T
Q  331 ccattcgatgatcatattcaaactcttcttctgattggcttaacgactcttgaaatgaaggttgattcaataatgaagttggaatcacaaatcgcttcat 430  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27446266 ccattcgatgatcatattcaaactcttcttctgattggcttaacgactcttgaaatgaaggttgattcaataatgaagttggaatcacaaatcgcttcat 27446167  T
Q  431 tttccctccaacataaaccgcaagatagccttttgggacttcatgcacagccttggaagatgatg 495  Q
    |||  ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  27446166 tttttctccaacataaaccgcaagatagccttttgggacttcatccacagccttggaagatgatg 27446102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 1 - 140
Target Start/End: Original strand, 27505488 - 27505627
Alignment:
Q  1 ttgtggagaaatatagagaaaatattgttaataaatttctcattgagatgaacatttttacaaccaagtatgataacaacaaaagataaaatcttttgaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  27505488 ttgtggagaaatatagagaaaatattgttaataaatttctcattgagatgaacatttttacaaccaagtatgataacaacaaaagattaaatcttttgaa 27505587  T
Q  101 tgtgagaaactaaactactacaaaaatgggtcaaatatct 140  Q
    |||||||||||||||| |||||||||||||||||||||||    
T  27505588 tgtgagaaactaaactgctacaaaaatgggtcaaatatct 27505627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 130 - 493
Target Start/End: Original strand, 27559070 - 27559423
Alignment:
Q  130 gtcaaatatctctgttcataactgtctcggttggatggcatttcagcttagaaacgaatgaaaaatgaaagtgtatgctgtacaatttggcttaactaac 229  Q
    ||||||||| | ||||||||||| |||| |||||||| || ||| ||||| ||| ||||||||||| |||| || | |||||||||||| |   || |||    
T  27559070 gtcaaatatatatgttcataactatctccgttggatgacagttctgcttaaaaa-gaatgaaaaattaaagagttttctgtacaatttgtc---ac-aac 27559164  T
Q  230 taatatctatgtaagtctcctttaatgagatttaacattgaagc-acgaagtgtgttctaagaaaacatcttcactgcaactgcaaggaatcaagagacc 328  Q
    |||||||||||| ||||| |||||| |||||||| ||||||||| | |||||| ||| ||||||| |||||||||||      ||||||||   ||||||    
T  27559165 taatatctatgtcagtcttctttaacgagatttagcattgaagccaagaagtgagttgtaagaaagcatcttcactg------caaggaattgtgagacc 27559258  T
Q  329 atccattcgatgatcatattcaaactcttcttctgattggcttaacgactcttgaaatgaaggttgattcaataatgaagttggaatcacaaatcgcttc 428  Q
    | ||||| ||||||||||| |||||||||||||||||||||||||  ||| ||||||||||| |||||||||||||||| | ||||||| ||||| ||||    
T  27559259 acccattggatgatcatatccaaactcttcttctgattggcttaataactattgaaatgaagattgattcaataatgaaataggaatcagaaatctcttc 27559358  T
Q  429 attttccctccaacataaaccgcaagatagccttttgggacttcatgcacagccttggaagatga 493  Q
    |||||  ||||||||||||| || |||||||||||||||| | ||| ||||| ||||||||||||    
T  27559359 attttgtctccaacataaactgcgagatagccttttgggattccatccacagtcttggaagatga 27559423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 7 - 126
Target Start/End: Complemental strand, 27480250 - 27480131
Alignment:
Q  7 agaaatatagagaaaatattgttaataaatttctcattgagatgaacatttttacaaccaagtatgataacaacaaaagataaaatcttttgaatgtgag 106  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |||||    
T  27480250 agaaatatagagaaaataatgttaataaatttctcattgagatgaacatttttacaaccaagtatgataacaacaaaagattaaatattttgaacgtgag 27480151  T
Q  107 aaactaaactactacaaaaa 126  Q
    ||||||||||||||||||||    
T  27480150 aaactaaactactacaaaaa 27480131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 4 - 140
Target Start/End: Complemental strand, 27487337 - 27487201
Alignment:
Q  4 tggagaaatatagagaaaatattgttaataaatttctcattgagatgaacatttttacaaccaagtatgataacaacaaaagataaaatcttttgaatgt 103  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||    
T  27487337 tggagaaatatagagaaaataatgttaataaatttctcattgagatgaacatttttacaaccaagtatgataacaacaaaagattaaatcttttgaaggt 27487238  T
Q  104 gagaaactaaactactac-aaaaatgggtcaaatatct 140  Q
    ||| ||  ||||| |||| |||||||||||| ||||||    
T  27487237 gag-aataaaactgctacaaaaaatgggtcagatatct 27487201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 130 - 495
Target Start/End: Original strand, 27556199 - 27556564
Alignment:
Q  130 gtcaaatatctctgttcataactgtctcggttggatggcatttcagcttagaaacgaatgaaaaatga-aagtgtatgctgtacaatttgg-cttaacta 227  Q
    ||||||||||| | ||||||||| ||||  ||  ||| | ||||  |||||||| ||||||||||  | |||||| |||| |||||||| | || |||||    
T  27556199 gtcaaatatctatattcataactatctcaattcaatgacttttcctcttagaaa-gaatgaaaaaaaataagtgtctgctatacaatttagtctcaacta 27556297  T
Q  228 actaatatctatgtaagtctcctttaatgagattta----acattgaagcac-gaagtgtgttctaagaaaacatcttcactgcaactgcaaggaatcaa 322  Q
    |||||||||||||| ||||| ||||| | |||||||    ||||||||||   |||| | ||| ||||||| |||||||||||||       |||||       
T  27556298 actaatatctatgtcagtcttctttagtaagatttatttaacattgaagccgagaagagagttgtaagaaagcatcttcactgcat------ggaattgt 27556391  T
Q  323 gagaccatccattcgatgatcatattcaaactcttcttctgattggcttaacgactcttgaaatgaaggttgattcaataatgaagttggaatcacaaat 422  Q
    ||||||| ||||   |||||||||| |||| |||||||||| |||   ||   | ||||||||||||||||| |||||||||||| | ||||||||||||    
T  27556392 gagaccacccatagaatgatcatatccaaattcttcttctgcttgatgtagtaattcttgaaatgaaggttggttcaataatgaaatgggaatcacaaat 27556491  T
Q  423 cgcttcattttccctccaacataaaccgcaagatagccttttgggacttcatgcacagccttggaagatgatg 495  Q
    |||||||||||  ||||||||||||| || |||||||||||||||||||||| ||||||||||||||| ||||    
T  27556492 cgcttcattttttctccaacataaactgcgagatagccttttgggacttcatccacagccttggaagaggatg 27556564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 26 - 140
Target Start/End: Original strand, 27523213 - 27523327
Alignment:
Q  26 tgttaataaatttctcattgagatgaacatttttacaaccaagtatgataacaacaaaagataaaatcttttgaatgtgagaaactaaactactacaaaa 125  Q
    |||||||||| ||||||||||| ||||||| ||||||| ||| |||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||    
T  27523213 tgttaataaacttctcattgaggtgaacatatttacaagcaaatatgataacaacaaaagataaaatcttttgaaggtgagaaactaaactgctacaaaa 27523312  T
Q  126 atgggtcaaatatct 140  Q
     ||||||||||||||    
T  27523313 ctgggtcaaatatct 27523327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 31 - 140
Target Start/End: Original strand, 27525929 - 27526037
Alignment:
Q  31 ataaatttctcattgagatgaacatttttacaaccaagtatgataacaacaaaagataaaatcttttgaatgtgagaaactaaactactacaaaaatggg 130  Q
    ||||||||||||||||| ||||| |||| | || ||||||| ||||||||||||||| ||||||| | || ||||||||||||||| |||||||||||||    
T  27525929 ataaatttctcattgaggtgaactttttcataaacaagtatcataacaacaaaagat-aaatcttctaaaggtgagaaactaaactgctacaaaaatggg 27526027  T
Q  131 tcaaatatct 140  Q
    ||||||||||    
T  27526028 tcaaatatct 27526037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 33 - 140
Target Start/End: Complemental strand, 27474200 - 27474094
Alignment:
Q  33 aaatttctcattgagatgaacatttttacaaccaagtatgataacaacaaaagataaaatcttttgaatgtgagaaactaaactactacaaaaatgggtc 132  Q
    |||||||||||| |||||||| |||| ||| ||||||||||||||||||||||  ||||||||||||| || |||||||||| | |||||||||| ||||    
T  27474200 aaatttctcattcagatgaacgtttt-acatccaagtatgataacaacaaaagtgaaaatcttttgaaggttagaaactaaagtgctacaaaaattggtc 27474102  T
Q  133 aaatatct 140  Q
    ||||||||    
T  27474101 aaatatct 27474094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 16 - 137
Target Start/End: Complemental strand, 27460811 - 27460696
Alignment:
Q  16 gagaaaatattgttaataaatttctcattgagatgaacatttttacaaccaagtatgataacaacaaaagataaaatcttttgaatgtgagaaactaaac 115  Q
    ||||||||  |||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||  |||||| |||| |  |||||||||||    
T  27460811 gagaaaatgatgttaataaatttctcattgagatgaacatttttacaac----tatgataacaacaaaagat-taatcttctgaaggatagaaactaaac 27460717  T
Q  116 tactacaaaaatgggtcaaata 137  Q
    | |||| |||||||||||||||    
T  27460716 tgctac-aaaatgggtcaaata 27460696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 6 - 81
Target Start/End: Complemental strand, 27477002 - 27476928
Alignment:
Q  6 gagaaatatagagaaaatattgttaataaatttctcattgagatgaacatttttacaaccaagtatgataacaaca 81  Q
    ||||||||||||||||||| ||  |||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  27477002 gagaaatatagagaaaataatgcaaataaatttctcattgagatgaacatttttacaa-caagtatgataacaaca 27476928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 324 - 472
Target Start/End: Original strand, 27424528 - 27424676
Alignment:
Q  324 agaccatccattcgatgatcatattcaaactcttcttctgattggcttaacgactcttgaaatgaaggttgattcaataatgaagttggaatcacaaatc 423  Q
    |||||| ||||| ||||||||||| || | |||||||| |||||  ||| | | ||||||||||||||||| |||||  ||||   |||||||||||| |    
T  27424528 agaccacccattggatgatcatatccatattcttcttcagattgatttagcaattcttgaaatgaaggttggttcaagtatgatactggaatcacaaacc 27424627  T
Q  424 gcttcattttccctccaacataaaccgcaagatagccttttgggacttc 472  Q
    || ||||||   |||||||||| || || ||||||||||||||||||||    
T  27424628 gcctcatttgatctccaacatagactgcgagatagccttttgggacttc 27424676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 324 - 466
Target Start/End: Original strand, 27502821 - 27502963
Alignment:
Q  324 agaccatccattcgatgatcatattcaaactcttcttctgattggcttaacgactcttgaaatgaaggttgattcaataatgaagttggaatcacaaatc 423  Q
    |||||| ||||| |||| |||||| |||| |||||  | | |||||| | | | ||||||||||||| |||||||||  ||||  ||||||||||||| |    
T  27502821 agaccacccattggatggtcatatccaaattcttccacagcttggctcagcaagtcttgaaatgaagtttgattcaaatatgacattggaatcacaaacc 27502920  T
Q  424 gcttcattttccctccaacataaaccgcaagatagccttttgg 466  Q
    ||||||| ||| |||| |||||||| |||||||| ||||||||    
T  27502921 gcttcatcttctctcctacataaacggcaagatatccttttgg 27502963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 21 - 79
Target Start/End: Original strand, 27513558 - 27513615
Alignment:
Q  21 aatattgttaataaatttctcattgagatgaacatttttacaaccaagtatgataacaa 79  Q
    |||| ||||||||||||| |||||||||||||| |||||||||||||||||||||||||    
T  27513558 aataatgttaataaatttgtcattgagatgaac-tttttacaaccaagtatgataacaa 27513615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 324 - 473
Target Start/End: Original strand, 27414318 - 27414467
Alignment:
Q  324 agaccatccattcgatgatcatattcaaactcttcttctgattggcttaacgactcttgaaatgaaggttgattcaataatgaagttggaatcacaaatc 423  Q
    |||||| ||||| ||||||||||| |||| ||||||||||||||  |||   | ||||||||||| ||||| |||||  ||||    ||||||||||| |    
T  27414318 agaccacccattggatgatcatatccaaattcttcttctgattgatttagtaattcttgaaatgagggttggttcaagtatgatacaggaatcacaaacc 27414417  T
Q  424 gcttcattttccctccaacataaaccgcaagatagccttttgggacttca 473  Q
    |  |||||||  ||||||| || || ||||||||||||||||| ||||||    
T  27414418 gtctcattttatctccaacgtagactgcaagatagccttttggcacttca 27414467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 130 - 247
Target Start/End: Complemental strand, 27439052 - 27438935
Alignment:
Q  130 gtcaaatatctctgttcataactgtctcggttggatggcatttcagcttagaaacgaatgaaaaatgaaagtgtatgctgtacaatttggcttaactaac 229  Q
    |||||| |||||||||||||||| |||| ||| | || ||||||   | ||||| ||||||||||||||  | | || ||||||||| | |||| |||||    
T  27439052 gtcaaaaatctctgttcataactatctcagttagctgtcatttccattaagaaaagaatgaaaaatgaagatatctgatgtacaattagtcttagctaac 27438953  T
Q  230 taatatctatgtaagtct 247  Q
    ||||||||||||||||||    
T  27438952 taatatctatgtaagtct 27438935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 26 - 140
Target Start/End: Complemental strand, 27469783 - 27469675
Alignment:
Q  26 tgttaataaatttctcattgagatgaacatttttacaaccaagtatgataacaacaaaagataaaatcttttgaatgtgagaaactaaactactacaaaa 125  Q
    ||||||||||||||||||| |||| |||||||| ||| ||||     || ||||||||||  ||||||||||||| ||  ||||||||| | ||||||||    
T  27469783 tgttaataaatttctcatttagatcaacatttt-acatccaa-----attacaacaaaagtgaaaatcttttgaaggtatgaaactaaagtgctacaaaa 27469690  T
Q  126 atgggtcaaatatct 140  Q
    |||||||| ||||||    
T  27469689 atgggtcagatatct 27469675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 80 - 140
Target Start/End: Original strand, 27513641 - 27513701
Alignment:
Q  80 caaaagataaaatcttttgaatgtgagaaactaaactactacaaaaatgggtcaaatatct 140  Q
    ||||||| ||| |||||| || ||||||||||| |||||||||||| ||||||||||||||    
T  27513641 caaaagagaaactcttttcaaggtgagaaactatactactacaaaattgggtcaaatatct 27513701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 323 - 473
Target Start/End: Complemental strand, 27571750 - 27571600
Alignment:
Q  323 gagaccatccattcgatgatcatattcaaactcttcttctgattggcttaacgactcttgaaatgaaggttgattcaataatgaagttggaatcacaaat 422  Q
    ||||||| ||||| ||||||||||| |||| ||||||||||||||  |||   | |||||||| || || ||  ||||  ||||   ||||||||| ||     
T  27571750 gagaccacccattggatgatcatatccaaattcttcttctgattgatttagtaattcttgaaacgatggctggctcaaatatgatactggaatcacgaac 27571651  T
Q  423 cgcttcattttccctccaacataaaccgcaagatagccttttgggacttca 473  Q
    ||| ||||| |  |||||||||| || || |||||||||||||||||||||    
T  27571650 cgcctcattctatctccaacatagactgcgagatagccttttgggacttca 27571600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 309 - 466
Target Start/End: Original strand, 27513775 - 27513932
Alignment:
Q  309 ctgcaaggaatcaagagaccatccattcgatgatcatattcaaactcttcttctgattggcttaacgactcttgaaatgaaggttgattcaataatgaag 408  Q
    |||||||||||   ||||||| ||||| |||||||||||||| | | |||||| | |||| | ||| | ||||| || || | ||| |||||  ||||      
T  27513775 ctgcaaggaatagtgagaccacccattggatgatcatattcatattgttcttcagcttggttcaacaattcttggaacgaggtttggttcaagtatgata 27513874  T
Q  409 ttggaatcacaaatcgcttcattttccctccaacataaaccgcaagatagccttttgg 466  Q
    |||| |||||||| |||||||||||| |||| ||||| || || ||||| ||||||||    
T  27513875 ttgggatcacaaaccgcttcattttctctcctacatacactgctagatatccttttgg 27513932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 309 - 466
Target Start/End: Original strand, 27526111 - 27526268
Alignment:
Q  309 ctgcaaggaatcaagagaccatccattcgatgatcatattcaaactcttcttctgattggcttaacgactcttgaaatgaaggttgattcaataatgaag 408  Q
    |||||||||||   ||||||| || || |||||||||||||||| | ||| || | |||||| ||| | ||||| ||||| | ||| |||||  ||||      
T  27526111 ctgcaaggaatagtgagaccacccgttggatgatcatattcaaattgttcctcagcttggctcaacaattcttggaatgaggtttggttcaagtatgata 27526210  T
Q  409 ttggaatcacaaatcgcttcattttccctccaacataaaccgcaagatagccttttgg 466  Q
      ||||||||||| |||||||||||| |||||||||| || || ||||| || |||||    
T  27526211 caggaatcacaaaccgcttcattttctctccaacatacactgctagatatccctttgg 27526268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 337 - 400
Target Start/End: Original strand, 27475606 - 27475669
Alignment:
Q  337 gatgatcatattcaaactcttcttctgattggcttaacgactcttgaaatgaaggttgattcaa 400  Q
    ||||||||||| |||||||||| || | ||| || ||| | |||||||||||||||||||||||    
T  27475606 gatgatcatatccaaactcttcctcggcttgactcaacaagtcttgaaatgaaggttgattcaa 27475669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 337 - 400
Target Start/End: Complemental strand, 27515004 - 27514941
Alignment:
Q  337 gatgatcatattcaaactcttcttctgattggcttaacgactcttgaaatgaaggttgattcaa 400  Q
    ||||||||||| |||| ||||| || ||||| || ||| | |||||||||||||||||||||||    
T  27515004 gatgatcatatccaaattcttcctcggattgactcaacaagtcttgaaatgaaggttgattcaa 27514941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 380 - 466
Target Start/End: Complemental strand, 17970369 - 17970283
Alignment:
Q  380 ttgaaatgaaggttgattcaataatgaagttggaatcacaaatcgcttcattttccctccaacataaaccgcaagatagccttttgg 466  Q
    ||||||||||| ||| |||||  |||| || || |||||||| |||||||||| | ||||||| || ||||||||||| || |||||    
T  17970369 ttgaaatgaagtttggttcaagtatgacgtagggatcacaaaccgcttcatttcctctccaacgtacaccgcaagatatccctttgg 17970283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 31 - 113
Target Start/End: Complemental strand, 27467142 - 27467061
Alignment:
Q  31 ataaatttctcattgagatgaacatttttacaaccaagtatgataacaacaaaagataaaatcttttgaatgtgagaaactaa 113  Q
    ||||||||||||||  ||||||  |||| ||| ||||||||||||||||||||||   ||||| |||||| || |||||||||    
T  27467142 ataaatttctcattccgatgaatgtttt-acatccaagtatgataacaacaaaagtggaaatcgtttgaaggttagaaactaa 27467061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 310 - 400
Target Start/End: Complemental strand, 27504062 - 27503972
Alignment:
Q  310 tgcaaggaatcaagagaccatccattcgatgatcatattcaaactcttcttctgattggcttaacgactcttgaaatgaaggttgattcaa 400  Q
    ||||||||||   ||| ||| ||||| ||||||||||| |||||||||| || | ||| || ||| | ||||||||||||||||| |||||    
T  27504062 tgcaaggaatggtgaggccacccattggatgatcatatccaaactcttcctcggcttgactcaacaagtcttgaaatgaaggttggttcaa 27503972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 86
Target Start/End: Original strand, 27500158 - 27500222
Alignment:
Q  21 aatattgttaataaatttctcattgagatgaacatttttacaaccaagtatgataacaacaaaaga 86  Q
    |||| ||||||||||||||||||| |||||||  ||| |||| ||||||||||| || ||||||||    
T  27500158 aatagtgttaataaatttctcattcagatgaa-gtttatacatccaagtatgatcactacaaaaga 27500222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 92 - 140
Target Start/End: Original strand, 27502011 - 27502060
Alignment:
Q  92 tcttttgaatgtgagaaactaaactactac-aaaaatgggtcaaatatct 140  Q
    ||||||||| ||||||||||||||| |||| ||||||| |||||||||||    
T  27502011 tcttttgaaggtgagaaactaaactgctacaaaaaatgtgtcaaatatct 27502060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 378 - 472
Target Start/End: Complemental strand, 50913568 - 50913474
Alignment:
Q  378 tcttgaaatgaaggttgattcaataatgaagttggaatcacaaatcgcttcattttccctccaacataaaccgcaagatagccttttgggacttc 472  Q
    ||||||||| |||| | |||||| |||||  |||||||||  || | |||||||||| |||||||||| || |||||||||||||||||||||||    
T  50913568 tcttgaaataaaggctcattcaagaatgatattggaatcaagaacctcttcattttctctccaacatacactgcaagatagccttttgggacttc 50913474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 428 - 472
Target Start/End: Complemental strand, 38035077 - 38035033
Alignment:
Q  428 cattttccctccaacataaaccgcaagatagccttttgggacttc 472  Q
    ||||||| |||||||||| |||||||||| |||||||||||||||    
T  38035077 cattttctctccaacatacaccgcaagatggccttttgggacttc 38035033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 357 - 472
Target Start/End: Complemental strand, 38032375 - 38032260
Alignment:
Q  357 tcttctgattggcttaacgactcttgaaatgaaggttgattcaataatgaagttggaatcacaaatcgcttcattttccctccaacataaaccgcaagat 456  Q
    ||||| |||||||| | | | ||||||||| |||| | |||||| |||||   |||||||| ||| |   |||||||| |||||||||| || |||||||    
T  38032375 tcttcagattggctaagcaattcttgaaataaaggctcattcaagaatgatactggaatcataaaccttctcattttctctccaacatacactgcaagat 38032276  T
Q  457 agccttttgggacttc 472  Q
    |||||||||| |||||    
T  38032275 agccttttggaacttc 38032260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 339 - 466
Target Start/End: Original strand, 50911898 - 50912025
Alignment:
Q  339 tgatcatattcaaactcttcttctgattggcttaacgactcttgaaatgaaggttgattcaataatgaagttggaatcacaaatcgcttcattttccctc 438  Q
    ||||||||| |||| ||||| |||| ||| || ||| | | ||||||||||| ||| |||||  ||||  | || |||||||| || ||||| ||  |||    
T  50911898 tgatcatatccaaattcttcctctgcttgactcaacaagttttgaaatgaagcttggttcaagtatgacttggggatcacaaaccgtttcatcttgtctc 50911997  T
Q  439 caacataaaccgcaagatagccttttgg 466  Q
    ||||||| |||||||||||||| |||||    
T  50911998 caacatataccgcaagatagccctttgg 50912025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 380 - 466
Target Start/End: Original strand, 38028836 - 38028922
Alignment:
Q  380 ttgaaatgaaggttgattcaataatgaagttggaatcacaaatcgcttcattttccctccaacataaaccgcaagatagccttttgg 466  Q
    ||||||||||| ||| |||||  |||| || || || |||||||||||||||| | ||||||| || || ||||||||||| |||||    
T  38028836 ttgaaatgaagcttggttcaagtatgacgtggggataacaaatcgcttcatttgctctccaacgtacactgcaagatagccctttgg 38028922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 378 - 472
Target Start/End: Complemental strand, 38038619 - 38038525
Alignment:
Q  378 tcttgaaatgaaggttgattcaataatgaagttggaatcacaaatcgcttcattttccctccaacataaaccgcaagatagccttttgggacttc 472  Q
    ||||||||| |||| | |||||| |||||  |||||||||  || |   |||||||| |||||||||| || ||||||| |||||||||||||||    
T  38038619 tcttgaaataaaggctcattcaagaatgatattggaatcatgaaccttctcattttctctccaacatacactgcaagatggccttttgggacttc 38038525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 380 - 466
Target Start/End: Original strand, 38040151 - 38040237
Alignment:
Q  380 ttgaaatgaaggttgattcaataatgaagttggaatcacaaatcgcttcattttccctccaacataaaccgcaagatagccttttgg 466  Q
    ||||||||||| ||| |||||  |||| || || || |||||||||||||||| | ||||||| || || ||||||||||| |||||    
T  38040151 ttgaaatgaagcttggttcaagtatgacgtggggataacaaatcgcttcatttgctctccaacgtacactgcaagatagccctttgg 38040237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 310 - 466
Target Start/End: Original strand, 38024875 - 38025031
Alignment:
Q  310 tgcaaggaatcaagagaccatccattcgatgatcatattcaaactcttcttctgattggcttaacgactcttgaaatgaaggttgattcaataatgaagt 409  Q
    |||||||||||  ||| ||| ||||| | ||||||||| |||| ||||| |||| ||| || ||  | | |||||| |||| ||| |||||  ||||  |    
T  38024875 tgcaaggaatcgtgaggccacccattgggtgatcatatccaaattcttcctctgcttgactcaataagttttgaaaggaagcttggttcaagtatgacat 38024974  T
Q  410 tggaatcacaaatcgcttcattttccctccaacataaaccgcaagatagccttttgg 466  Q
     || || ||||| |||||||||| | |||||||||| || ||||||||||| |||||    
T  38024975 ggggataacaaaccgcttcatttgctctccaacatatactgcaagatagccctttgg 38025031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 310 - 466
Target Start/End: Original strand, 38031327 - 38031483
Alignment:
Q  310 tgcaaggaatcaagagaccatccattcgatgatcatattcaaactcttcttctgattggcttaacgactcttgaaatgaaggttgattcaataatgaagt 409  Q
    |||||||||||  ||| ||| ||||| | ||||||||| |||| ||||| |||| ||| || ||  | | |||||| |||| ||| |||||  ||||  |    
T  38031327 tgcaaggaatcgtgaggccacccattgggtgatcatatccaaattcttcctctgcttgactcaataagttttgaaaggaagcttggttcaagtatgacat 38031426  T
Q  410 tggaatcacaaatcgcttcattttccctccaacataaaccgcaagatagccttttgg 466  Q
     || || ||||| |||||||||| | |||||||||| || ||||||||||| |||||    
T  38031427 ggggataacaaaccgcttcatttgctctccaacatatactgcaagatagccctttgg 38031483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 331 - 459
Target Start/End: Complemental strand, 38044022 - 38043894
Alignment:
Q  331 ccattcgatgatcatattcaaactcttcttctgattggcttaacgactcttgaaatgaaggttgattcaataatgaagttggaatcacaaatcgcttcat 430  Q
    ||||| ||||||||||| |||| ||||| |||| ||| || | | | |||||||| |||| |||||||||  ||||  | || |||||||| ||||||||    
T  38044022 ccattggatgatcatatccaaattcttcctctgcttgactcagcaagtcttgaaacgaagtttgattcaagtatgacatagggatcacaaaccgcttcat 38043923  T
Q  431 tttccctccaacataaaccgcaagatagc 459  Q
    || | ||||||  || || ||||||||||    
T  38043922 ttcctctccaaagtacactgcaagatagc 38043894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 349 - 453
Target Start/End: Original strand, 55082744 - 55082848
Alignment:
Q  349 caaactcttcttctgattggcttaacgactcttgaaatgaaggttgattcaataatgaagttggaatcacaaatcgcttcattttccctccaacataaac 448  Q
    ||||||| ||||||| |||||| | | | ||||||||| |||| | |||||| |||||   ||||||||  || | |||||||||| |||||||||||||    
T  55082744 caaactcctcttctgcttggctaagcaattcttgaaataaaggctcattcaaaaatgatactggaatcaggaacctcttcattttctctccaacataaac 55082843  T
Q  449 cgcaa 453  Q
     ||||    
T  55082844 agcaa 55082848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 414 - 466
Target Start/End: Complemental strand, 55084822 - 55084770
Alignment:
Q  414 atcacaaatcgcttcattttccctccaacataaaccgcaagatagccttttgg 466  Q
    |||||||| |||||||||||| |||||||||| || |||||| | ||||||||    
T  55084822 atcacaaaccgcttcattttctctccaacatacactgcaagacacccttttgg 55084770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 378 - 472
Target Start/End: Complemental strand, 21608329 - 21608235
Alignment:
Q  378 tcttgaaatgaaggttgattcaataatgaagttggaatcacaaatcgcttcattttccctccaacataaaccgcaagatagccttttgggacttc 472  Q
    ||||||||| |||| | |||||| |||||  |||||||||  || |   |||||||| |||||||||| || ||||||||||||||||| |||||    
T  21608329 tcttgaaataaaggctcattcaagaatgatattggaatcatgaaccttctcattttctctccaacatacactgcaagatagccttttggaacttc 21608235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 380 - 466
Target Start/End: Complemental strand, 3073639 - 3073553
Alignment:
Q  380 ttgaaatgaaggttgattcaataatgaagttggaatcacaaatcgcttcattttccctccaacataaaccgcaagatagccttttgg 466  Q
    ||||||||||| ||| |||||  |||| || || |||||||| |||||||||| | ||||||| || ||||||||||| || |||||    
T  3073639 ttgaaatgaagtttggttcaagtatgacgtagggatcacaaaccgcttcatttcctctccaacgtacaccgcaagatatccctttgg 3073553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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