View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8911_low_50 (Length: 502)

Name: NF8911_low_50
Description: NF8911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8911_low_50
NF8911_low_50
[»] chr1 (60 HSPs)
chr1 (217-376)||(10577680-10577839)
chr1 (1-61)||(3282786-3282846)
chr1 (1-61)||(3284487-3284547)
chr1 (1-61)||(9312014-9312074)
chr1 (1-61)||(37664741-37664801)
chr1 (1-61)||(37674463-37674523)
chr1 (1-61)||(37702171-37702231)
chr1 (210-368)||(1486657-1486820)
chr1 (1-61)||(9310397-9310457)
chr1 (282-376)||(5898211-5898305)
chr1 (217-376)||(42359394-42359553)
chr1 (210-368)||(2896074-2896232)
chr1 (254-376)||(37598824-37598945)
chr1 (1-61)||(5924960-5925020)
chr1 (310-376)||(25934675-25934741)
chr1 (282-376)||(51410045-51410139)
chr1 (1-62)||(902061-902122)
chr1 (284-376)||(12918967-12919059)
chr1 (280-367)||(40181889-40181976)
chr1 (282-368)||(18190061-18190147)
chr1 (282-376)||(18337349-18337443)
chr1 (282-368)||(40258886-40258972)
chr1 (281-376)||(29163326-29163421)
chr1 (309-376)||(32461398-32461465)
chr1 (217-368)||(41597423-41597574)
chr1 (282-367)||(1815277-1815362)
chr1 (280-376)||(36878479-36878580)
chr1 (242-376)||(46348328-46348462)
chr1 (280-368)||(30749858-30749946)
chr1 (280-368)||(30771309-30771397)
chr1 (244-376)||(22515832-22515964)
chr1 (310-376)||(9828103-9828169)
chr1 (1-47)||(16808765-16808811)
chr1 (254-317)||(25934608-25934671)
chr1 (1-47)||(48940675-48940721)
chr1 (217-314)||(398772-398869)
chr1 (3-47)||(17449310-17449354)
chr1 (280-320)||(34371731-34371771)
chr1 (280-320)||(44482248-44482288)
chr1 (280-319)||(1864882-1864921)
chr1 (244-312)||(12443469-12443537)
chr1 (8-55)||(36580553-36580600)
chr1 (225-272)||(40917714-40917761)
chr1 (280-359)||(43492456-43492535)
chr1 (280-326)||(2784574-2784620)
chr1 (282-336)||(13997903-13997957)
chr1 (280-326)||(23636044-23636090)
chr1 (282-376)||(38078606-38078700)
chr1 (310-376)||(40917808-40917874)
chr1 (310-376)||(47989556-47989622)
chr1 (221-319)||(10572591-10572689)
chr1 (280-329)||(14332634-14332683)
chr1 (280-368)||(27965953-27966039)
chr1 (297-334)||(39130754-39130791)
chr1 (282-327)||(52903269-52903314)
chr1 (280-320)||(7918212-7918252)
chr1 (283-327)||(13436479-13436523)
chr1 (280-320)||(20157351-20157391)
chr1 (280-320)||(25361904-25361944)
chr1 (280-336)||(28674818-28674874)
[»] chr3 (39 HSPs)
chr3 (280-376)||(13845470-13845566)
chr3 (254-376)||(35222930-35223052)
chr3 (280-376)||(2941576-2941672)
chr3 (227-376)||(55401040-55401189)
chr3 (217-374)||(15999957-16000120)
chr3 (282-368)||(40993288-40993374)
chr3 (226-368)||(28917965-28918109)
chr3 (280-376)||(8789493-8789591)
chr3 (254-366)||(10954944-10955056)
chr3 (245-373)||(18426932-18427060)
chr3 (280-320)||(14028025-14028065)
chr3 (217-368)||(7171457-7171607)
chr3 (282-376)||(20503485-20503579)
chr3 (280-342)||(25093520-25093582)
chr3 (217-272)||(10335335-10335390)
chr3 (1-47)||(17402969-17403015)
chr3 (282-327)||(7928470-7928515)
chr3 (280-336)||(11251996-11252050)
chr3 (310-375)||(25064966-25065031)
chr3 (284-376)||(25775531-25775621)
chr3 (286-374)||(3631708-3631796)
chr3 (219-316)||(4990972-4991069)
chr3 (309-376)||(25074841-25074909)
chr3 (151-191)||(46299764-46299804)
chr3 (281-376)||(8842348-8842443)
chr3 (311-350)||(14338454-14338493)
chr3 (280-351)||(45451571-45451642)
chr3 (310-368)||(4987233-4987291)
chr3 (310-376)||(14209172-14209238)
chr3 (316-378)||(16192665-16192727)
chr3 (280-326)||(20691337-20691383)
chr3 (310-376)||(41961584-41961650)
chr3 (376-406)||(46299717-46299747)
chr3 (217-272)||(750667-750723)
chr3 (296-336)||(6780404-6780444)
chr3 (316-376)||(14216957-14217017)
chr3 (316-376)||(14223086-14223146)
chr3 (316-376)||(27505305-27505365)
chr3 (100-128)||(46300108-46300136)
[»] chr8 (41 HSPs)
chr8 (217-376)||(43737756-43737917)
chr8 (282-376)||(3951481-3951575)
chr8 (1-61)||(14935562-14935622)
chr8 (310-376)||(34450966-34451032)
chr8 (217-376)||(926733-926892)
chr8 (280-376)||(3025569-3025665)
chr8 (280-368)||(20679348-20679436)
chr8 (280-373)||(14134717-14134810)
chr8 (242-368)||(36450707-36450833)
chr8 (280-375)||(33405330-33405425)
chr8 (281-320)||(34451038-34451077)
chr8 (310-376)||(29510238-29510304)
chr8 (1-47)||(30224229-30224275)
chr8 (282-368)||(31557016-31557102)
chr8 (210-320)||(2572057-2572167)
chr8 (280-373)||(40332209-40332302)
chr8 (3-47)||(5567425-5567469)
chr8 (296-368)||(8293859-8293931)
chr8 (280-335)||(4786324-4786379)
chr8 (1-47)||(3375609-3375655)
chr8 (1-47)||(31032185-31032231)
chr8 (6-47)||(3379305-3379346)
chr8 (210-267)||(24857957-24858014)
chr8 (280-376)||(26902109-26902216)
chr8 (242-328)||(31236570-31236656)
chr8 (284-336)||(9414860-9414912)
chr8 (297-376)||(5813627-5813706)
chr8 (217-272)||(22651931-22651986)
chr8 (299-373)||(126295-126369)
chr8 (282-320)||(11927087-11927125)
chr8 (280-326)||(13844591-13844637)
chr8 (310-376)||(22652035-22652101)
chr8 (280-326)||(34897103-34897149)
chr8 (283-320)||(8847277-8847314)
chr8 (280-325)||(12606825-12606870)
chr8 (280-336)||(37283797-37283851)
chr8 (301-350)||(44462166-44462215)
chr8 (301-350)||(44469699-44469748)
chr8 (7-47)||(6428739-6428779)
chr8 (220-272)||(24196646-24196698)
chr8 (280-376)||(31580072-31580168)
[»] chr2 (34 HSPs)
chr2 (280-376)||(24009314-24009409)
chr2 (240-368)||(20242680-20242808)
chr2 (297-376)||(18840958-18841037)
chr2 (282-376)||(2438664-2438758)
chr2 (251-376)||(36096309-36096445)
chr2 (296-376)||(28596503-28596583)
chr2 (240-376)||(15972851-15972987)
chr2 (282-376)||(12224243-12224337)
chr2 (218-320)||(34784983-34785085)
chr2 (299-376)||(34993927-34994004)
chr2 (210-336)||(40361739-40361865)
chr2 (283-362)||(5367213-5367292)
chr2 (1-47)||(29758119-29758165)
chr2 (282-373)||(5040754-5040845)
chr2 (280-367)||(37411198-37411285)
chr2 (218-320)||(18054804-18054907)
chr2 (286-372)||(29176442-29176528)
chr2 (311-376)||(26769571-26769636)
chr2 (243-368)||(41843422-41843552)
chr2 (296-376)||(21091757-21091837)
chr2 (280-335)||(18276539-18276594)
chr2 (282-361)||(31808097-31808176)
chr2 (310-376)||(30717464-30717530)
chr2 (310-376)||(35056927-35056993)
chr2 (310-376)||(37419802-37419868)
chr2 (282-376)||(37558997-37559091)
chr2 (282-350)||(28677929-28678002)
chr2 (282-327)||(34691799-34691844)
chr2 (282-327)||(34714211-34714256)
chr2 (280-321)||(38355887-38355928)
chr2 (6-54)||(18739664-18739712)
chr2 (280-320)||(18889592-18889632)
chr2 (282-342)||(30404829-30404889)
chr2 (280-320)||(44860338-44860378)
[»] chr6 (52 HSPs)
chr6 (217-376)||(18367792-18367961)
chr6 (226-376)||(34595098-34595248)
chr6 (1-61)||(33869231-33869291)
chr6 (217-376)||(8776913-8777077)
chr6 (3-62)||(14611068-14611127)
chr6 (215-376)||(16488524-16488690)
chr6 (1-62)||(15866564-15866625)
chr6 (240-376)||(9658857-9658994)
chr6 (1-61)||(14620496-14620556)
chr6 (1-61)||(15868377-15868437)
chr6 (1-61)||(32079895-32079955)
chr6 (1-61)||(33866084-33866144)
chr6 (282-376)||(13789174-13789268)
chr6 (282-376)||(13797793-13797887)
chr6 (282-376)||(28152118-28152212)
chr6 (210-320)||(16766645-16766755)
chr6 (316-368)||(12696383-12696435)
chr6 (240-368)||(16833286-16833414)
chr6 (297-376)||(32978844-32978923)
chr6 (221-368)||(853812-853959)
chr6 (282-376)||(33001234-33001328)
chr6 (218-320)||(9027134-9027236)
chr6 (281-333)||(7740660-7740712)
chr6 (217-326)||(7938071-7938180)
chr6 (280-376)||(13360318-13360413)
chr6 (280-376)||(7996327-7996419)
chr6 (280-376)||(8022382-8022474)
chr6 (257-376)||(17327595-17327719)
chr6 (280-331)||(19040370-19040421)
chr6 (1-47)||(5376876-5376922)
chr6 (1-47)||(5378731-5378777)
chr6 (280-326)||(7265588-7265634)
chr6 (280-330)||(7377997-7378047)
chr6 (230-321)||(19044432-19044523)
chr6 (282-376)||(28715315-28715409)
chr6 (299-336)||(30851637-30851674)
chr6 (254-331)||(5626686-5626763)
chr6 (280-320)||(9025495-9025535)
chr6 (282-342)||(24645501-24645561)
chr6 (3-45)||(1088841-1088883)
chr6 (282-320)||(7027262-7027300)
chr6 (310-376)||(8365453-8365519)
chr6 (310-376)||(10339059-10339125)
chr6 (1-47)||(15149231-15149277)
chr6 (1-47)||(19645486-19645532)
chr6 (322-376)||(31384990-31385044)
chr6 (210-267)||(426568-426625)
chr6 (280-336)||(31579212-31579266)
chr6 (280-320)||(9617452-9617492)
chr6 (280-320)||(9629401-9629441)
chr6 (280-320)||(26562707-26562747)
chr6 (3-47)||(28884443-28884487)
[»] scaffold0652 (1 HSPs)
scaffold0652 (217-376)||(407-566)
[»] chr5 (38 HSPs)
chr5 (217-376)||(6401453-6401623)
chr5 (298-376)||(30098983-30099061)
chr5 (1-62)||(39787245-39787306)
chr5 (215-376)||(21814220-21814386)
chr5 (219-376)||(21191001-21191158)
chr5 (280-376)||(30502333-30502429)
chr5 (280-376)||(30542676-30542772)
chr5 (282-376)||(21576690-21576784)
chr5 (254-374)||(42029744-42029864)
chr5 (296-377)||(26312803-26312884)
chr5 (282-376)||(43564901-43564995)
chr5 (280-336)||(18421826-18421882)
chr5 (282-342)||(42893380-42893440)
chr5 (217-336)||(6770498-6770615)
chr5 (280-331)||(28588664-28588715)
chr5 (9-55)||(25076310-25076356)
chr5 (9-55)||(25134279-25134325)
chr5 (221-320)||(37328845-37328944)
chr5 (306-376)||(39268543-39268613)
chr5 (221-266)||(42469180-42469225)
chr5 (280-320)||(3966521-3966561)
chr5 (280-376)||(21194068-21194164)
chr5 (310-374)||(21522809-21522873)
chr5 (310-374)||(21533375-21533439)
chr5 (310-374)||(21542089-21542153)
chr5 (280-376)||(27932253-27932349)
chr5 (217-272)||(15382432-15382487)
chr5 (217-272)||(21522705-21522760)
chr5 (217-272)||(21533271-21533326)
chr5 (217-272)||(41995426-41995481)
chr5 (299-349)||(23012380-23012430)
chr5 (282-331)||(15884008-15884057)
chr5 (299-368)||(32630688-32630757)
chr5 (280-317)||(39758290-39758327)
chr5 (280-320)||(6471890-6471930)
chr5 (280-376)||(17123066-17123161)
chr5 (316-376)||(30098391-30098451)
chr5 (280-320)||(41091258-41091298)
[»] chr4 (49 HSPs)
chr4 (229-376)||(5414106-5414264)
chr4 (218-376)||(23292931-23293089)
chr4 (1-62)||(23985758-23985819)
chr4 (1-61)||(52545287-52545347)
chr4 (1-61)||(3529333-3529393)
chr4 (1-61)||(24807409-24807469)
chr4 (282-368)||(49431046-49431132)
chr4 (218-376)||(12895219-12895377)
chr4 (210-376)||(36635272-36635444)
chr4 (310-376)||(30982812-30982878)
chr4 (217-336)||(35157970-35158089)
chr4 (1-61)||(18395820-18395880)
chr4 (10-61)||(18320063-18320114)
chr4 (10-61)||(18398569-18398620)
chr4 (1-47)||(7040360-7040406)
chr4 (280-354)||(9996858-9996932)
chr4 (322-376)||(19482739-19482793)
chr4 (1-47)||(23564861-23564907)
chr4 (282-376)||(34306749-34306843)
chr4 (282-336)||(54580008-54580062)
chr4 (3-47)||(18656107-18656151)
chr4 (280-356)||(19097859-19097935)
chr4 (280-376)||(35161054-35161150)
chr4 (315-373)||(848015-848073)
chr4 (280-342)||(8402721-8402783)
chr4 (280-350)||(8423689-8423759)
chr4 (310-376)||(12323968-12324034)
chr4 (282-376)||(12797283-12797377)
chr4 (290-328)||(20950420-20950458)
chr4 (310-376)||(22234824-22234890)
chr4 (1-47)||(23566535-23566581)
chr4 (282-368)||(28964201-28964287)
chr4 (1-47)||(52518758-52518804)
chr4 (1-47)||(52520600-52520646)
chr4 (311-376)||(24613635-24613700)
chr4 (282-331)||(40179626-40179675)
chr4 (316-376)||(3947706-3947766)
chr4 (282-350)||(29205464-29205532)
chr4 (297-376)||(2361920-2361999)
chr4 (217-320)||(13783236-13783339)
chr4 (322-376)||(29205528-29205582)
chr4 (282-336)||(36509077-36509131)
chr4 (310-356)||(44362714-44362760)
chr4 (282-376)||(715550-715646)
chr4 (282-376)||(752876-752972)
chr4 (2-47)||(3274627-3274672)
chr4 (280-321)||(5775358-5775399)
chr4 (280-368)||(30103310-30103397)
chr4 (280-316)||(40613468-40613504)
[»] chr7 (38 HSPs)
chr7 (1-65)||(37405636-37405700)
chr7 (218-368)||(18212986-18213137)
chr7 (280-376)||(32287408-32287504)
chr7 (280-359)||(39138462-39138541)
chr7 (299-376)||(598245-598322)
chr7 (1-62)||(25471957-25472018)
chr7 (280-368)||(27093366-27093454)
chr7 (280-368)||(27184847-27184935)
chr7 (286-373)||(33994236-33994323)
chr7 (280-350)||(5835265-5835335)
chr7 (282-376)||(15680829-15680923)
chr7 (283-331)||(640134-640182)
chr7 (280-376)||(20549809-20549905)
chr7 (280-376)||(21880170-21880266)
chr7 (280-331)||(9482952-9483003)
chr7 (282-376)||(43027409-43027508)
chr7 (1-47)||(4895583-4895629)
chr7 (1-47)||(20046683-20046729)
chr7 (221-320)||(27945000-27945099)
chr7 (1-47)||(28124774-28124820)
chr7 (1-47)||(28126601-28126647)
chr7 (1-47)||(44963162-44963208)
chr7 (280-368)||(12278853-12278941)
chr7 (316-376)||(32093959-32094020)
chr7 (316-376)||(5409776-5409836)
chr7 (316-376)||(9778559-9778619)
chr7 (280-320)||(22602711-22602751)
chr7 (310-373)||(26033398-26033461)
chr7 (217-320)||(1433409-1433512)
chr7 (217-316)||(21140987-21141086)
chr7 (254-368)||(22868034-22868153)
chr7 (217-267)||(23859985-23860035)
chr7 (310-376)||(24339701-24339767)
chr7 (282-368)||(26733324-26733410)
chr7 (280-368)||(1401043-1401129)
chr7 (297-350)||(21864843-21864896)
chr7 (296-341)||(22484059-22484104)
chr7 (217-249)||(9408413-9408445)
[»] scaffold0116 (1 HSPs)
scaffold0116 (217-320)||(9853-9956)
[»] scaffold0006 (1 HSPs)
scaffold0006 (1-62)||(39129-39190)
[»] scaffold0251 (1 HSPs)
scaffold0251 (1-61)||(6211-6271)
[»] scaffold0057 (1 HSPs)
scaffold0057 (1-70)||(58762-58831)
[»] scaffold0053 (1 HSPs)
scaffold0053 (210-376)||(8746-8912)
[»] scaffold0306 (1 HSPs)
scaffold0306 (221-376)||(13359-13520)
[»] scaffold0152 (1 HSPs)
scaffold0152 (221-376)||(21807-21968)
[»] scaffold0050 (1 HSPs)
scaffold0050 (282-376)||(70298-70392)
[»] scaffold0623 (2 HSPs)
scaffold0623 (280-320)||(5997-6037)
scaffold0623 (323-374)||(5932-5983)
[»] scaffold0361 (1 HSPs)
scaffold0361 (252-376)||(14520-14641)
[»] scaffold0022 (1 HSPs)
scaffold0022 (280-342)||(90861-90923)
[»] scaffold0279 (1 HSPs)
scaffold0279 (280-336)||(17788-17844)
[»] scaffold0083 (1 HSPs)
scaffold0083 (296-376)||(45475-45555)
[»] scaffold0021 (1 HSPs)
scaffold0021 (210-318)||(130430-130538)
[»] scaffold0003 (1 HSPs)
scaffold0003 (310-376)||(241653-241719)
[»] scaffold0793 (1 HSPs)
scaffold0793 (282-376)||(4826-4922)
[»] scaffold0380 (1 HSPs)
scaffold0380 (323-376)||(8662-8715)
[»] scaffold0123 (1 HSPs)
scaffold0123 (280-317)||(44529-44566)
[»] scaffold0086 (1 HSPs)
scaffold0086 (310-375)||(2987-3052)
[»] scaffold0036 (1 HSPs)
scaffold0036 (280-320)||(9748-9788)
[»] scaffold0020 (1 HSPs)
scaffold0020 (280-320)||(135313-135353)


Alignment Details
Target: chr1 (Bit Score: 91; Significance: 7e-44; HSPs: 60)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 217 - 376
Target Start/End: Complemental strand, 10577839 - 10577680
Alignment:
Q  217 ggatacggacacggacaccgaaaacgacacggatacggacacgccgacacaactaannnnnnnagaaaatcacaaaatgcagtgtaattatatgtgtcgg 316  Q
    |||||||||||||||||||| | |||||||||| || |||||||||||||| ||||       |||||||||||||||||||||||||||||||||||||    
T  10577839 ggatacggacacggacaccggacacgacacggacaccgacacgccgacacagctaatttttttagaaaatcacaaaatgcagtgtaattatatgtgtcgg 10577740  T
Q  317 tgtcagacacgacacgtgtcggacacggggacacaccttatccaaggagtgttcgtgctt 376  Q
     | | |||||||| |||||| ||||||||||||| ||||||||||||||||| |||||||    
T  10577739 gggcggacacgacgcgtgtctgacacggggacacgccttatccaaggagtgtccgtgctt 10577680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 3282846 - 3282786
Alignment:
Q  1 ccaagctactaactctagtttacctatcaactaaccatagttgattattcatactctaata 61  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  3282846 ccaagctactaactctagtttacctatcaactaactatagttgattattcatactctaata 3282786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 3284547 - 3284487
Alignment:
Q  1 ccaagctactaactctagtttacctatcaactaaccatagttgattattcatactctaata 61  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  3284547 ccaagctactaactctagtttacctatcaactaactatagttgattattcatactctaata 3284487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 9312074 - 9312014
Alignment:
Q  1 ccaagctactaactctagtttacctatcaactaaccatagttgattattcatactctaata 61  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  9312074 ccaagctactaactctagtttacctatcaactaactatagttgattattcatactctaata 9312014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 37664741 - 37664801
Alignment:
Q  1 ccaagctactaactctagtttacctatcaactaaccatagttgattattcatactctaata 61  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  37664741 ccaagctactaactctagtttacctatcaactaactatagttgattattcatactctaata 37664801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 37674463 - 37674523
Alignment:
Q  1 ccaagctactaactctagtttacctatcaactaaccatagttgattattcatactctaata 61  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  37674463 ccaagctactaactctagtttacctatcaactaactatagttgattattcatactctaata 37674523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 37702231 - 37702171
Alignment:
Q  1 ccaagctactaactctagtttacctatcaactaaccatagttgattattcatactctaata 61  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  37702231 ccaagctactaactctagtttacctatcaactaactatagttgattattcatactctaata 37702171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 210 - 368
Target Start/End: Complemental strand, 1486820 - 1486657
Alignment:
Q  210 gaagaatggatacggacacggacaccgaaaacgacacggatacggacacgccgacacaactaannnnnnnagaaaatcacaaaatgcagtgtaattatat 309  Q
    |||| ||||||||||||||||| |||| | ||||||||||||| ||||||| |||||| ||||       | ||||||||| ||| |||||||||||||     
T  1486820 gaagcatggatacggacacggataccggatacgacacggatactgacacgctgacacagctaataatttgaaaaaatcacataattcagtgtaattataa 1486721  T
Q  310 gtgtcggtgtca-----gacacgacacgtgtcggacacggggacacaccttatccaaggagtgt 368  Q
    |||||||||||      ||||||||||||||| ||||| ||||||| ||| |||| ||||||||    
T  1486720 gtgtcggtgtcgtgtcggacacgacacgtgtccgacaccgggacacgcctaatccgaggagtgt 1486657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 9310457 - 9310397
Alignment:
Q  1 ccaagctactaactctagtttacctatcaactaaccatagttgattattcatactctaata 61  Q
    ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||    
T  9310457 ccaagctactaactctagtttacttatcaactaactatagttgattattcatactctaata 9310397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 282 - 376
Target Start/End: Complemental strand, 5898305 - 5898211
Alignment:
Q  282 aaaatcacaaaatgcagtgtaattatatgtgtcggtgtcagacacgacacgtgtcggacacggggacacaccttatccaaggagtgttcgtgctt 376  Q
    ||||||||| ||| ||||||||||||||| |||||||||||||||||||||||||  |||| |||||||  || |||| |||||||| |||||||    
T  5898305 aaaatcacataattcagtgtaattatatgcgtcggtgtcagacacgacacgtgtccaacaccgggacacgtctaatccgaggagtgtccgtgctt 5898211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 217 - 376
Target Start/End: Complemental strand, 42359553 - 42359394
Alignment:
Q  217 ggatacggacacggacaccgaaaacgacacggatacggacacgccgacacaactaannnnnnnagaaaatcacaaaatgcagtgtaattatatgtgtcgg 316  Q
    ||||||||||||| |||||| | || ||||||| || ||||||| |||||| ||||       | ||||||||||||| ||||||||||| | |||||||    
T  42359553 ggatacggacacgaacaccgtacacaacacggacactgacacgctgacacatctaataatttgaaaaaatcacaaaattcagtgtaattacaagtgtcgg 42359454  T
Q  317 tgtcagacacgacacgtgtcggacacggggacacaccttatccaaggagtgttcgtgctt 376  Q
    |||| |||| |||  ||||| ||||| ||||||| ||| |||| |||||||| |||||||    
T  42359453 tgtcggacaagacgtgtgtccgacaccgggacacgcctaatccgaggagtgtccgtgctt 42359394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 210 - 368
Target Start/End: Complemental strand, 2896232 - 2896074
Alignment:
Q  210 gaagaatggatacggacacggacaccgaaaacgacacggatacggacacgccgacacaactaannnnnnnagaaaatcacaaaatgcagtgtaattatat 309  Q
    |||||| |||||| | |||||||| || | || ||||||| || |||||||||||||  ||||       ||||||||||| ||| |||||||  |||||    
T  2896232 gaagaacggatacagtcacggacaacggacacaacacggacactgacacgccgacaccgctaataatttgagaaaatcacataattcagtgtagctatat 2896133  T
Q  310 gtgtcggtgtcagacacgacacgtgtcggacacggggacacaccttatccaaggagtgt 368  Q
     |||||||||||||||||||| ||||| || || ||||||||||| ||||||| |||||    
T  2896132 atgtcggtgtcagacacgacatgtgtccgagaccgggacacacctaatccaagaagtgt 2896074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 254 - 376
Target Start/End: Original strand, 37598824 - 37598945
Alignment:
Q  254 gacacgccgacacaactaannnnnnnagaaaatcacaaaatgcagtgtaattatatgtgtcggtgtcagacacgacacgtgtcggacacggggacacacc 353  Q
    |||||||||||||||||||       | ||||||||||| | ||||||||||||| ||||||||||| ||||||||||||||| ||||  ||||||| ||    
T  37598824 gacacgccgacacaactaataatttgaaaaaatcacaaatt-cagtgtaattataagtgtcggtgtcggacacgacacgtgtccgacaatgggacacgcc 37598922  T
Q  354 ttatccaaggagtgttcgtgctt 376  Q
    | |||| |||||||| |||||||    
T  37598923 taatccgaggagtgtccgtgctt 37598945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 5924960 - 5925020
Alignment:
Q  1 ccaagctactaactctagtttacctatcaactaaccatagttgattattcatactctaata 61  Q
    |||| |||||||||||| ||||||||||||||||| |||||||||||||||||||||||||    
T  5924960 ccaaactactaactctaatttacctatcaactaactatagttgattattcatactctaata 5925020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 310 - 376
Target Start/End: Original strand, 25934675 - 25934741
Alignment:
Q  310 gtgtcggtgtcagacacgacacgtgtcggacacggggacacaccttatccaaggagtgttcgtgctt 376  Q
    ||||||||||| ||||||||||||||| |||||||||| || ||||||||||||||||| |||||||    
T  25934675 gtgtcggtgtcggacacgacacgtgtctgacacggggatacgccttatccaaggagtgtccgtgctt 25934741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 282 - 376
Target Start/End: Original strand, 51410045 - 51410139
Alignment:
Q  282 aaaatcacaaaatgcagtgtaattatatgtgtcggtgtcagacacgacacgtgtcggacacggggacacaccttatccaaggagtgttcgtgctt 376  Q
    ||||||||| ||| ||||||||||| | ||||||||||| |||||||||||| || ||||| | ||||| ||| ||||||||||| |||||||||    
T  51410045 aaaatcacataattcagtgtaattacaagtgtcggtgtcggacacgacacgtatccgacaccgagacacgcctaatccaaggagtattcgtgctt 51410139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 902122 - 902061
Alignment:
Q  1 ccaagctactaactctagtttacctatcaactaaccatagttgattattcatactctaataa 62  Q
    ||||||||||||||||||||||||||||||||||| |||| |||||||||||| | ||||||    
T  902122 ccaagctactaactctagtttacctatcaactaactatagatgattattcatattataataa 902061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 284 - 376
Target Start/End: Original strand, 12918967 - 12919059
Alignment:
Q  284 aatcacaaaatgcagtgtaattatatgtgtcggtgtcagacacgacacgtgtcggacacggggacacaccttatccaaggagtgttcgtgctt 376  Q
    ||||||| ||| || ||| ||||||||||| ||| || ||||||||||||||| |||||||||||||  ||||||| || |||||||||||||    
T  12918967 aatcacataattcaatgtgattatatgtgttggtatcggacacgacacgtgtctgacacggggacacggcttatccgagaagtgttcgtgctt 12919059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 280 - 367
Target Start/End: Original strand, 40181889 - 40181976
Alignment:
Q  280 agaaaatcacaaaatgcagtgtaattatatgtgtcggtgtcagacacgacacgtgtcggacacggggacacaccttatccaaggagtg 367  Q
    ||||||||||| ||| |||||||||||||||| |||||||| ||||| |||||||||  |||| ||||||| ||| |||| |||||||    
T  40181889 agaaaatcacataattcagtgtaattatatgtatcggtgtcggacacaacacgtgtcctacaccgggacacgcctaatccgaggagtg 40181976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 282 - 368
Target Start/End: Complemental strand, 18190147 - 18190061
Alignment:
Q  282 aaaatcacaaaatgcagtgtaattatatgtgtcggtgtcagacacgacacgtgtcggacacggggacacaccttatccaaggagtgt 368  Q
    ||||| ||| ||| ||||||||||| | |||||| |||||||||| ||||||||| ||||| ||||||||||| |||| ||||||||    
T  18190147 aaaattacataattcagtgtaattacaagtgtcgatgtcagacacaacacgtgtccgacaccgggacacacctaatccgaggagtgt 18190061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 282 - 376
Target Start/End: Original strand, 18337349 - 18337443
Alignment:
Q  282 aaaatcacaaaatgcagtgtaattatatgtgtcggtgtcagacacgacacgtgtcggacacggggacacaccttatccaaggagtgttcgtgctt 376  Q
    ||||||||| ||| ||||||||||| | ||||||||||| ||||| ||||||||| ||||| ||||||  ||| |||| |||||||| |||||||    
T  18337349 aaaatcacataattcagtgtaattacaagtgtcggtgtcggacacaacacgtgtccgacactgggacatgcctgatccgaggagtgtccgtgctt 18337443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 282 - 368
Target Start/End: Complemental strand, 40258972 - 40258886
Alignment:
Q  282 aaaatcacaaaatgcagtgtaattatatgtgtcggtgtcagacacgacacgtgtcggacacggggacacaccttatccaaggagtgt 368  Q
    ||||||||| ||| ||||||||||| | |||||||||||||||||||||| |||| |||||  |||||| ||| |||| ||||||||    
T  40258972 aaaatcacataattcagtgtaattacaagtgtcggtgtcagacacgacacctgtccgacaccaggacacgcctaatccgaggagtgt 40258886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 281 - 376
Target Start/End: Complemental strand, 29163421 - 29163326
Alignment:
Q  281 gaaaatcacaaaatgcagtgtaattatatgtgtcggtgtcagacacgacacgtgtcggacacggggacacaccttatccaaggagtgttcgtgctt 376  Q
    |||||||||| ||| || | |||||||||||||||||||| ||||||||||||| | ||||| |||||||  || |||  || |||||||||||||    
T  29163421 gaaaatcacataattcaatttaattatatgtgtcggtgtcggacacgacacgtgcctgacaccgggacacggctaatcagagaagtgttcgtgctt 29163326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 309 - 376
Target Start/End: Complemental strand, 32461465 - 32461398
Alignment:
Q  309 tgtgtcggtgtcagacacgacacgtgtcggacacggggacacaccttatccaaggagtgttcgtgctt 376  Q
    |||||||||||| ||||||||||||||| ||||| ||||||| ||| ||||||| ||||| |||||||    
T  32461465 tgtgtcggtgtcggacacgacacgtgtctgacactgggacacgcctaatccaagaagtgtccgtgctt 32461398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 217 - 368
Target Start/End: Complemental strand, 41597574 - 41597423
Alignment:
Q  217 ggatacggacacggacaccgaaaacgacacggatacggacacgccgacacaactaannnnnnnagaaaatcacaaaatgca-gtgtaattatatgtgtcg 315  Q
    ||||||||| ||||||||| || |||||||||| || |||||||| ||||| ||||       |||||||||||||||  | ||||   | | ||||||     
T  41597574 ggatacggatacggacaccaaacacgacacggacaccgacacgccaacacagctaaattttctagaaaatcacaaaatatatgtgttggtgt-tgtgtcc 41597476  T
Q  316 gtgtcagacacgacacgtgtcggacacggggacacaccttatccaaggagtgt 368  Q
    ||||| ||||||||||||||| |||||||||| || | |||||||||||||||    
T  41597475 gtgtcggacacgacacgtgtctgacacggggatacgctttatccaaggagtgt 41597423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 282 - 367
Target Start/End: Original strand, 1815277 - 1815362
Alignment:
Q  282 aaaatcacaaaatgcagtgtaattatatgtgtcggtgtcagacacgacacgtgtcggacacggggacacaccttatccaaggagtg 367  Q
    ||||||||| ||| ||||||||||| | ||||||||||| |||||||||| |||| ||||| ||||||| ||| |||  |||||||    
T  1815277 aaaatcacataattcagtgtaattacaagtgtcggtgtccgacacgacacatgtccgacaccgggacacgcctaatctgaggagtg 1815362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 280 - 376
Target Start/End: Original strand, 36878479 - 36878580
Alignment:
Q  280 agaaaatcacaaaatgcagtgtaattatatgtgtcggtgtcagacacgacacgtgtc-----ggacacggggacacaccttatccaaggagtgttcgtgc 374  Q
    ||||||||||| ||| ||||||||||||| ||||||||||| ||||||| || ||||      ||||||||||||| ||| |||| |||||||| |||||    
T  36878479 agaaaatcacataattcagtgtaattataggtgtcggtgtctgacacgaaacatgtccgacacgacacggggacacgcctaatcccaggagtgtccgtgc 36878578  T
Q  375 tt 376  Q
    ||    
T  36878579 tt 36878580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 242 - 376
Target Start/End: Complemental strand, 46348462 - 46348328
Alignment:
Q  242 gacacggatacggacacgccgacacaactaannnnnnnagaaaatcacaaaatgcagtgtaattatatgtgtcggtgtcagacacgacacgtgtcggaca 341  Q
    |||||||| || |||||||||||||| ||||       | ||||||| | |||  |||||||||| | ||||||||||| ||||||||||||||| ||||    
T  46348462 gacacggacactgacacgccgacacagctaataatttgaaaaaatcatataatttagtgtaattacaagtgtcggtgtcggacacgacacgtgtccgaca 46348363  T
Q  342 cggggacacaccttatccaaggagtgttcgtgctt 376  Q
    | | ||||| ||| |||| ||| |||| |||||||    
T  46348362 ccgagacacgcctgatccgaggtgtgtccgtgctt 46348328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 280 - 368
Target Start/End: Original strand, 30749858 - 30749946
Alignment:
Q  280 agaaaatcacaaaatgcagtgtaattatatgtgtcggtgtcagacacgacacgtgtcggacacggggacacaccttatccaaggagtgt 368  Q
    ||||||||||| ||| ||||||||||||||||||||||||| ||||| ||| ||||  |||||| ||| || | |||| | ||||||||    
T  30749858 agaaaatcacataattcagtgtaattatatgtgtcggtgtcggacaccacatgtgtttgacacgaggatacgcattattcgaggagtgt 30749946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 280 - 368
Target Start/End: Original strand, 30771309 - 30771397
Alignment:
Q  280 agaaaatcacaaaatgcagtgtaattatatgtgtcggtgtcagacacgacacgtgtcggacacggggacacaccttatccaaggagtgt 368  Q
    ||||||||||| ||| ||||||||||||||||||||||||| ||||| ||| ||||  |||||| ||| || | |||| | ||||||||    
T  30771309 agaaaatcacataattcagtgtaattatatgtgtcggtgtcggacaccacatgtgtttgacacgaggatacgcattattcgaggagtgt 30771397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 244 - 376
Target Start/End: Complemental strand, 22515964 - 22515832
Alignment:
Q  244 cacggatacggacacgccgacacaactaannnnnnnagaaaatcacaaaatgcagtgtaattatatgtgtcggtgtcagacacgacacgtgtcggacacg 343  Q
    |||||| |||||||||| |||||| ||||       | ||||||||| |||  |||||||||| | ||||||||||| |||||||||| | || |||||     
T  22515964 cacggacacggacacgcagacacagctaataatttgaaaaaatcacataatttagtgtaattacaagtgtcggtgtcggacacgacacatatccgacacc 22515865  T
Q  344 gggacacaccttatccaaggagtgttcgtgctt 376  Q
    | ||||| ||| |||| |||||||| |||||||    
T  22515864 gagacacgcctaatccgaggagtgtccgtgctt 22515832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 310 - 376
Target Start/End: Original strand, 9828103 - 9828169
Alignment:
Q  310 gtgtcggtgtcagacacgacacgtgtcggacacggggacacaccttatccaaggagtgttcgtgctt 376  Q
    ||||| ||||||||||||||||||||| ||||| |||||||  || |||| |||||||| |||||||    
T  9828103 gtgtccgtgtcagacacgacacgtgtccgacaccgggacacgtctaatccgaggagtgtccgtgctt 9828169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 16808765 - 16808811
Alignment:
Q  1 ccaagctactaactctagtttacctatcaactaaccatagttgatta 47  Q
    |||| |||||||||||||||||| ||||||||||| |||||||||||    
T  16808765 ccaaactactaactctagtttacttatcaactaactatagttgatta 16808811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 254 - 317
Target Start/End: Original strand, 25934608 - 25934671
Alignment:
Q  254 gacacgccgacacaactaannnnnnnagaaaatcacaaaatgcagtgtaattatatgtgtcggt 317  Q
    |||||||||||||| ||||       ||||||||||||||| ||||||||||||||||||||||    
T  25934608 gacacgccgacacagctaaattttctagaaaatcacaaaatacagtgtaattatatgtgtcggt 25934671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 48940721 - 48940675
Alignment:
Q  1 ccaagctactaactctagtttacctatcaactaaccatagttgatta 47  Q
    |||| |||||||||||||||||| ||||||||||| |||||||||||    
T  48940721 ccaaactactaactctagtttacttatcaactaactatagttgatta 48940675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 217 - 314
Target Start/End: Complemental strand, 398869 - 398772
Alignment:
Q  217 ggatacggacacggacaccgaaaacgacacggatacggacacgccgacacaactaannnnnnnagaaaatcacaaaatgcagtgtaattatatgtgtc 314  Q
    |||||||||| ||||||||| | |||||||||| || |||||||||||||  ||||       | ||||||||| ||| ||||||||||||| |||||    
T  398869 ggatacggacgcggacaccggacacgacacggacactgacacgccgacaccgctaataatttgaaaaaatcacataattcagtgtaattataggtgtc 398772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 3 - 47
Target Start/End: Complemental strand, 17449354 - 17449310
Alignment:
Q  3 aagctactaactctagtttacctatcaactaaccatagttgatta 47  Q
    ||||||||||| ||||||||| ||||||||||| |||||||||||    
T  17449354 aagctactaaccctagtttacttatcaactaactatagttgatta 17449310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 280 - 320
Target Start/End: Original strand, 34371731 - 34371771
Alignment:
Q  280 agaaaatcacaaaatgcagtgtaattatatgtgtcggtgtc 320  Q
    ||||||||||| ||| |||||||||||||||||||||||||    
T  34371731 agaaaatcacataattcagtgtaattatatgtgtcggtgtc 34371771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 280 - 320
Target Start/End: Original strand, 44482248 - 44482288
Alignment:
Q  280 agaaaatcacaaaatgcagtgtaattatatgtgtcggtgtc 320  Q
    ||||||||||| ||| |||||||||||||||||||||||||    
T  44482248 agaaaatcacataattcagtgtaattatatgtgtcggtgtc 44482288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 280 - 319
Target Start/End: Complemental strand, 1864921 - 1864882
Alignment:
Q  280 agaaaatcacaaaatgcagtgtaattatatgtgtcggtgt 319  Q
    ||||||||||| ||| ||||||||||||||||||||||||    
T  1864921 agaaaatcacataattcagtgtaattatatgtgtcggtgt 1864882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 244 - 312
Target Start/End: Complemental strand, 12443537 - 12443469
Alignment:
Q  244 cacggatacggacacgccgacacaactaannnnnnnagaaaatcacaaaatgcagtgtaattatatgtg 312  Q
    |||||||||||||||||||||||| ||||       ||||||||||| ||| |||||||||| ||||||    
T  12443537 cacggatacggacacgccgacacagctaataatttgagaaaatcacataattcagtgtaattgtatgtg 12443469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 8 - 55
Target Start/End: Complemental strand, 36580600 - 36580553
Alignment:
Q  8 actaactctagtttacctatcaactaaccatagttgattattcatact 55  Q
    ||||||||||||| |||||||||||| | ||||| |||||||||||||    
T  36580600 actaactctagttaacctatcaactatctatagtagattattcatact 36580553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 225 - 272
Target Start/End: Original strand, 40917714 - 40917761
Alignment:
Q  225 acacggacaccgaaaacgacacggatacggacacgccgacacaactaa 272  Q
    |||||||||||| | ||||||||||||| |||||||||||||| ||||    
T  40917714 acacggacaccggacacgacacggatactgacacgccgacacagctaa 40917761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 280 - 359
Target Start/End: Complemental strand, 43492535 - 43492456
Alignment:
Q  280 agaaaatcacaaaatgcagtgtaattatatgtgtcggtgtcagacacgacacgtgtcggacacggggacacaccttatcc 359  Q
    ||||||||||  ||| | |||||||||| |||||||||||||||||| |||| |||| ||||| || |||| ||| ||||    
T  43492535 agaaaatcacgtaattcggtgtaattatgtgtgtcggtgtcagacacaacacatgtccgacaccggcacacgcctaatcc 43492456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #45
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 280 - 326
Target Start/End: Original strand, 2784574 - 2784620
Alignment:
Q  280 agaaaatcacaaaatgcagtgtaattatatgtgtcggtgtcagacac 326  Q
    ||||||||||| |||  ||| ||||||||||||||||||||||||||    
T  2784574 agaaaatcacataattgagtataattatatgtgtcggtgtcagacac 2784620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #46
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 282 - 336
Target Start/End: Original strand, 13997903 - 13997957
Alignment:
Q  282 aaaatcacaaaatgcagtgtaattatatgtgtcggtgtcagacacgacacgtgtc 336  Q
    ||||||||| ||| ||||||||||||||||||||||||  || ||||||| ||||    
T  13997903 aaaatcacataattcagtgtaattatatgtgtcggtgttggagacgacacatgtc 13997957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #47
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 280 - 326
Target Start/End: Complemental strand, 23636090 - 23636044
Alignment:
Q  280 agaaaatcacaaaatgcagtgtaattatatgtgtcggtgtcagacac 326  Q
    ||||||| ||| ||| |||||||||| ||||||||||||||||||||    
T  23636090 agaaaattacataattcagtgtaattgtatgtgtcggtgtcagacac 23636044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #48
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 282 - 376
Target Start/End: Complemental strand, 38078700 - 38078606
Alignment:
Q  282 aaaatcacaaaatgcagtgtaattatatgtgtcggtgtcagacacgacacgtgtcggacacggggacacaccttatccaaggagtgttcgtgctt 376  Q
    ||||||||| ||| || |||||||| | ||||||||||| |||||||||| |||   ||||  |||||| ||| |||| |||||| |||||||||    
T  38078700 aaaatcacataattcaatgtaattacaagtgtcggtgtcggacacgacacatgttcaacaccaggacacgcctaatccgaggagtattcgtgctt 38078606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #49
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 310 - 376
Target Start/End: Original strand, 40917808 - 40917874
Alignment:
Q  310 gtgtcggtgtcagacacgacacgtgtcggacacggggacacaccttatccaaggagtgttcgtgctt 376  Q
    ||||||||||  ||||||||||||||| ||||| ||||||| ||| |||| |||| ||| |||||||    
T  40917808 gtgtcggtgttggacacgacacgtgtccgacaccgggacacgcctaatccgaggactgtccgtgctt 40917874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #50
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 310 - 376
Target Start/End: Original strand, 47989556 - 47989622
Alignment:
Q  310 gtgtcggtgtcagacacgacacgtgtcggacacggggacacaccttatccaaggagtgttcgtgctt 376  Q
    ||||||||||| |||||||||| |||| ||||  ||||||| ||| |||| |||||||| |||||||    
T  47989556 gtgtcggtgtcggacacgacacatgtctgacatcgggacacgcctaatccgaggagtgtccgtgctt 47989622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #51
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 221 - 319
Target Start/End: Complemental strand, 10572689 - 10572591
Alignment:
Q  221 acggacacggacaccgaaaacgacacggatacggacacgccgacacaactaannnnnnnagaaaatcacaaaatgcagtgtaattatatgtgtcggtgt 319  Q
    ||||| |||||||||| | |||||| | | || ||||||||||||| |||||       ||||||||||| ||| | ||||||||| ||||||||||||    
T  10572689 acggatacggacaccggacacgacatgaacactgacacgccgacaccactaataatttgagaaaatcacataattcggtgtaattaaatgtgtcggtgt 10572591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #52
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 280 - 329
Target Start/End: Complemental strand, 14332683 - 14332634
Alignment:
Q  280 agaaaatcacaaaatgcagtgtaattatatgtgtcggtgtcagacacgac 329  Q
    ||||||||||| |||  ||||||||||||||| |||||||| ||||||||    
T  14332683 agaaaatcacataatttagtgtaattatatgtctcggtgtcggacacgac 14332634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #53
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 280 - 368
Target Start/End: Complemental strand, 27966039 - 27965953
Alignment:
Q  280 agaaaatcacaaaatgcagtgtaattatatgtgtcggtgtcagacacgacacgtgtcggacacggggacacaccttatccaaggagtgt 368  Q
    |||||||||  |||| ||||||||||||||||  | |||||||||||| | |||| | ||||| ||||||| ||| |||| ||||||||    
T  27966039 agaaaatcattaaattcagtgtaattatatgt--ccgtgtcagacacgcctcgtgcctgacaccgggacacgcctaatccgaggagtgt 27965953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #54
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 297 - 334
Target Start/End: Complemental strand, 39130791 - 39130754
Alignment:
Q  297 agtgtaattatatgtgtcggtgtcagacacgacacgtg 334  Q
    |||||||||||||||||||||||| ||||| |||||||    
T  39130791 agtgtaattatatgtgtcggtgtcggacacaacacgtg 39130754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #55
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 282 - 327
Target Start/End: Original strand, 52903269 - 52903314
Alignment:
Q  282 aaaatcacaaaatgcagtgtaattatatgtgtcggtgtcagacacg 327  Q
    ||||||| | ||| ||||||||||||||||||||||||| ||||||    
T  52903269 aaaatcatataattcagtgtaattatatgtgtcggtgtcggacacg 52903314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #56
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 280 - 320
Target Start/End: Complemental strand, 7918252 - 7918212
Alignment:
Q  280 agaaaatcacaaaatgcagtgtaattatatgtgtcggtgtc 320  Q
    ||||||||||| ||| ||||||||||||||||||| |||||    
T  7918252 agaaaatcacataattcagtgtaattatatgtgtcagtgtc 7918212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #57
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 283 - 327
Target Start/End: Original strand, 13436479 - 13436523
Alignment:
Q  283 aaatcacaaaatgcagtgtaattatatgtgtcggtgtcagacacg 327  Q
    |||||||| ||| |||||||||||||||||| |||||| ||||||    
T  13436479 aaatcacataattcagtgtaattatatgtgttggtgtcggacacg 13436523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #58
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 280 - 320
Target Start/End: Complemental strand, 20157391 - 20157351
Alignment:
Q  280 agaaaatcacaaaatgcagtgtaattatatgtgtcggtgtc 320  Q
    ||||||||||| ||| ||||||||| |||||||||||||||    
T  20157391 agaaaatcacataattcagtgtaatcatatgtgtcggtgtc 20157351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #59
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 280 - 320
Target Start/End: Original strand, 25361904 - 25361944
Alignment:
Q  280 agaaaatcacaaaatgcagtgtaattatatgtgtcggtgtc 320  Q
    ||||||||||| ||| ||||||||||||||||||| |||||    
T  25361904 agaaaatcacataattcagtgtaattatatgtgtcagtgtc 25361944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #60
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 280 - 336
Target Start/End: Original strand, 28674818 - 28674874
Alignment:
Q  280 agaaaatcacaaaatgcagtgtaattatatgtgtcggtgtcagacacgacacgtgtc 336  Q
    ||||||| ||| ||| |||| ||||||||| ||| ||||||||||||||||| ||||    
T  28674818 agaaaattacataattcagtataattatatatgttggtgtcagacacgacacttgtc 28674874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 73; Significance: 4e-33; HSPs: 39)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 280 - 376
Target Start/End: Complemental strand, 13845566 - 13845470
Alignment:
Q  280 agaaaatcacaaaatgcagtgtaattatatgtgtcggtgtcagacacgacacgtgtcggacacggggacacaccttatccaaggagtgttcgtgctt 376  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| ||||||| ||||| ||||||||||||||||| |||||||    
T  13845566 agaaaatcacaaaatgcagtgtaattatatgtgtcggtgtcggacacgagacgtgtctgacacggagacacgccttatccaaggagtgtccgtgctt 13845470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 254 - 376
Target Start/End: Original strand, 35222930 - 35223052
Alignment:
Q  254 gacacgccgacacaactaannnnnnnagaaaatcacaaaatgcagtgtaattatatgtgtcggtgtcagacacgacacgtgtcggacacggggacacacc 353  Q
    |||||||||||||||||||       ||||||||||| ||| || |||||||||||||||||||||| |||| |||||||||| ||||||||||||| |     
T  35222930 gacacgccgacacaactaacatttttagaaaatcacataattcaatgtaattatatgtgtcggtgtcggacatgacacgtgtctgacacggggacacgct 35223029  T
Q  354 ttatccaaggagtgttcgtgctt 376  Q
    |||||| |||||||| |||||||    
T  35223030 ttatccgaggagtgtccgtgctt 35223052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 280 - 376
Target Start/End: Original strand, 2941576 - 2941672
Alignment:
Q  280 agaaaatcacaaaatgcagtgtaattatatgtgtcggtgtcagacacgacacgtgtcggacacggggacacaccttatccaaggagtgttcgtgctt 376  Q
    ||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| |||| ||||| |  ||||||||||| | |||| ||||||    
T  2941576 agaaaatcacaaaatacagtgtaattatatgtgtcggtgtcggacacgacacgtgtctgacatggggatatgccttatccaagaaatgtttgtgctt 2941672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 227 - 376
Target Start/End: Original strand, 55401040 - 55401189
Alignment:
Q  227 acggacaccgaaaacgacacggatacggacacgccgacacaactaannnnnnnagaaaatcacaaaatgcagtgtaattatatgtgtcggtgtcagacac 326  Q
    |||||||||| | |||||||||| || || ||||||||||||||||       | ||||||||| |||  |||||||||| | ||||||||||| |||||    
T  55401040 acggacaccggatacgacacggacactgatacgccgacacaactaataatttgaaaaaatcacataatttagtgtaattacaagtgtcggtgtcggacac 55401139  T
Q  327 gacacgtgtcggacacggggacacaccttatccaaggagtgttcgtgctt 376  Q
    |||||||||| ||||| | ||||| ||| |||| |||||||| |||||||    
T  55401140 gacacgtgtccgacaccgagacacgcctaatccgaggagtgtccgtgctt 55401189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 217 - 374
Target Start/End: Complemental strand, 16000120 - 15999957
Alignment:
Q  217 ggatacggacacggacaccgaaaacgacacggatacggacacgccgacacaactaannnnnnnagaaaatcacaaaatgcagtgtaattatatgtgtcgg 316  Q
    |||||||||||||||||||||| ||||||| || || |||||||||||||||||||       | ||||| ||| ||| |||||||| || | |||||||    
T  16000120 ggatacggacacggacaccgaacacgacacagacactgacacgccgacacaactaataatttaaaaaaataacataattcagtgtaactacaagtgtcgg 16000021  T
Q  317 tgtcag------acacgacacgtgtcggacacggggacacaccttatccaaggagtgttcgtgc 374  Q
    |||| |      |||||||||||||| ||||| ||||||| ||| ||||||||||||| |||||    
T  16000020 tgtcggacacgtacacgacacgtgtccgacaccgggacacgcctaatccaaggagtgtccgtgc 15999957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 282 - 368
Target Start/End: Complemental strand, 40993374 - 40993288
Alignment:
Q  282 aaaatcacaaaatgcagtgtaattatatgtgtcggtgtcagacacgacacgtgtcggacacggggacacaccttatccaaggagtgt 368  Q
    ||||||||| ||| ||||||||||||||||||||||||| |||||||||| |||| ||||| ||||||| ||| |||| ||||||||    
T  40993374 aaaatcacataattcagtgtaattatatgtgtcggtgtcggacacgacacatgtccgacaccgggacacgcctaatccgaggagtgt 40993288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 226 - 368
Target Start/End: Original strand, 28917965 - 28918109
Alignment:
Q  226 cacggacaccgaaaacgacacggatacggacacgccgacacaactaannnnnnnagaaaatcacaaaatgcagtgtaattatatgtgtcggtgtca--ga 323  Q
    ||||||||||| | |||||||||| || |||||||||||| | ||||       | ||||||||| ||| ||||||||||| | |||||||||||   ||    
T  28917965 cacggacaccggacacgacacggaaactgacacgccgacatagctaataatttgaaaaaatcacataattcagtgtaattacaagtgtcggtgtcgtgga 28918064  T
Q  324 cacgacacgtgtcggacacggggacacaccttatccaaggagtgt 368  Q
    ||||||||||||| ||||| ||||||| ||| |||||||||||||    
T  28918065 cacgacacgtgtccgacactgggacacgcctaatccaaggagtgt 28918109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 280 - 376
Target Start/End: Complemental strand, 8789591 - 8789493
Alignment:
Q  280 agaaaatcacaaaatgcagtgtaattatatgtgtcggtgtcagacacg--acacgtgtcggacacggggacacaccttatccaaggagtgttcgtgctt 376  Q
    ||||||||||| ||| | ||||||||||||||||||||||| ||||||  |||| |||||||||| | ||||| ||| |||| |||||||| |||||||    
T  8789591 agaaaatcacataattccgtgtaattatatgtgtcggtgtcggacacgacacacatgtcggacaccgagacacgcctaatccgaggagtgtccgtgctt 8789493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 254 - 366
Target Start/End: Original strand, 10954944 - 10955056
Alignment:
Q  254 gacacgccgacacaactaannnnnnnagaaaatcacaaaatgcagtgtaattatatgtgtcggtgtcagacacgacacgtgtcggacacggggacacacc 353  Q
    |||||||||||||||||||       | ||||||||| ||| ||||||||| | | ||||||||||| ||||||||||||||| ||||| ||||||| ||    
T  10954944 gacacgccgacacaactaataatttgaaaaaatcacataattcagtgtaatcacaagtgtcggtgtcggacacgacacgtgtccgacactgggacacgcc 10955043  T
Q  354 ttatccaaggagt 366  Q
    | |||| ||||||    
T  10955044 taatccgaggagt 10955056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 245 - 373
Target Start/End: Original strand, 18426932 - 18427060
Alignment:
Q  245 acggatacggacacgccgacacaactaannnnnnnagaaaatcacaaaatgcagtgtaattatatgtgtcggtgtcagacacgacacgtgtcggacacgg 344  Q
    ||||| |||||||||||||||| |||||       | ||||||||| ||| | |||||||||||| |||||||||| || |||||||||||| | ||| |    
T  18426932 acggacacggacacgccgacaccactaataatttcaaaaaatcacataattcggtgtaattatatatgtcggtgtcggatacgacacgtgtccggcaccg 18427031  T
Q  345 ggacacaccttatccaaggagtgttcgtg 373  Q
    |||||||||| |||  |||||||| ||||    
T  18427032 ggacacacctaatctgaggagtgtccgtg 18427060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 280 - 320
Target Start/End: Original strand, 14028025 - 14028065
Alignment:
Q  280 agaaaatcacaaaatgcagtgtaattatatgtgtcggtgtc 320  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  14028025 agaaaatcacaaaatgcagtgtaattatatgtgtcggtgtc 14028065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 217 - 368
Target Start/End: Original strand, 7171457 - 7171607
Alignment:
Q  217 ggatacggacacggacaccgaaaacgacacggatacggacacgccgacacaactaannnnnnnagaaaatcacaaaatgcagtgtaattatatgtgtcgg 316  Q
    |||||||||||| ||||||| | ||||||||||||| |||| ||||||||| ||         | ||||||| | ||| | ||||||||| | |||| ||    
T  7171457 ggatacggacacagacaccggacacgacacggatactgacatgccgacacagcttgtaatttga-aaaatcatataattcggtgtaattacaagtgttgg 7171555  T
Q  317 tgtcagacacgacacgtgtcggacacggggacacaccttatccaaggagtgt 368  Q
    |||| ||||||||||||||| ||||| | ||||| ||| |||||||||||||    
T  7171556 tgtcggacacgacacgtgtccgacaccgcgacacgcctaatccaaggagtgt 7171607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 282 - 376
Target Start/End: Original strand, 20503485 - 20503579
Alignment:
Q  282 aaaatcacaaaatgcagtgtaattatatgtgtcggtgtcagacacgacacgtgtcggacacggggacacaccttatccaaggagtgttcgtgctt 376  Q
    ||||| ||| ||| ||||||||||| | ||||||||||  |||||||||| |||| ||||| ||||||| ||| |||| |||||||| |||||||    
T  20503485 aaaatgacataattcagtgtaattacaagtgtcggtgttggacacgacacatgtctgacaccgggacacgcctaatccgaggagtgtccgtgctt 20503579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 280 - 342
Target Start/End: Original strand, 25093520 - 25093582
Alignment:
Q  280 agaaaatcacaaaatgcagtgtaattatatgtgtcggtgtcagacacgacacgtgtcggacac 342  Q
    ||||||||||| ||| ||||||||||||||||||||||||| ||||| |||| |||| |||||    
T  25093520 agaaaatcacacaattcagtgtaattatatgtgtcggtgtcggacacaacacatgtccgacac 25093582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 217 - 272
Target Start/End: Complemental strand, 10335390 - 10335335
Alignment:
Q  217 ggatacggacacggacaccgaaaacgacacggatacggacacgccgacacaactaa 272  Q
    ||||||| |||||||||||| | |||||||||| || |||||||||||||||||||    
T  10335390 ggatacgaacacggacaccggacacgacacggacactgacacgccgacacaactaa 10335335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 17402969 - 17403015
Alignment:
Q  1 ccaagctactaactctagtttacctatcaactaaccatagttgatta 47  Q
    |||| |||||||||||||||||| ||||||||||| |||||||||||    
T  17402969 ccaaactactaactctagtttacttatcaactaactatagttgatta 17403015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 282 - 327
Target Start/End: Original strand, 7928470 - 7928515
Alignment:
Q  282 aaaatcacaaaatgcagtgtaattatatgtgtcggtgtcagacacg 327  Q
    ||||||||| ||| ||||||||||||||||||||||||| ||||||    
T  7928470 aaaatcacataattcagtgtaattatatgtgtcggtgtcggacacg 7928515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 280 - 336
Target Start/End: Original strand, 11251996 - 11252050
Alignment:
Q  280 agaaaatcacaaaatgcagtgtaattatatgtgtcggtgtcagacacgacacgtgtc 336  Q
    ||||||||||| ||| ||||||||||||  ||||||||||||||||| |||||||||    
T  11251996 agaaaatcacataattcagtgtaattat--gtgtcggtgtcagacacaacacgtgtc 11252050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 310 - 375
Target Start/End: Original strand, 25064966 - 25065031
Alignment:
Q  310 gtgtcggtgtcagacacgacacgtgtcggacacggggacacaccttatccaaggagtgttcgtgct 375  Q
    |||| |||||| ||||||||||||||| ||||| |||||||   |||||| |||||||||||||||    
T  25064966 gtgttggtgtcggacacgacacgtgtctgacaccgggacacggtttatccgaggagtgttcgtgct 25065031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 284 - 376
Target Start/End: Original strand, 25775531 - 25775621
Alignment:
Q  284 aatcacaaaatgcagtgtaattatatgtgtcggtgtcagacacgacacgtgtcggacacggggacacaccttatccaaggagtgttcgtgctt 376  Q
    ||||||| ||| ||||||||||| | ||||||||||| ||||||   |||||| |||||  |||||| ||| |||| ||||||||||||||||    
T  25775531 aatcacataattcagtgtaattacaagtgtcggtgtcggacacg--tcgtgtccgacaccaggacacgcctaatccgaggagtgttcgtgctt 25775621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 286 - 374
Target Start/End: Original strand, 3631708 - 3631796
Alignment:
Q  286 tcacaaaatgcagtgtaattatatgtgtcggtgtcagacacgacacgtgtcggacacggggacacaccttatccaaggagtgttcgtgc 374  Q
    ||||| ||| ||||||||||||||||| | ||||| |||||||||| |||| |||||  |||||| |||  ||| |||||||| |||||    
T  3631708 tcacataattcagtgtaattatatgtgccagtgtcggacacgacacatgtccgacaccaggacacgcctagtccgaggagtgtccgtgc 3631796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 219 - 316
Target Start/End: Complemental strand, 4991069 - 4990972
Alignment:
Q  219 atacggacacggacaccgaaaacgacacggatacggacacgccgacacaactaannnnnnnagaaaatcacaaaatgcagtgtaattatatgtgtcgg 316  Q
    |||||||||||||||||||| |||||||||| || ||||| |||||||  ||||       ||||||| ||| ||| ||||||||||| | |||||||    
T  4991069 atacggacacggacaccgaacacgacacggagactgacactccgacaccgctaatagtttgagaaaattacataattcagtgtaattacaagtgtcgg 4990972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 309 - 376
Target Start/End: Original strand, 25074841 - 25074909
Alignment:
Q  309 tgtgtcggtgtcagacacga-cacgtgtcggacacggggacacaccttatccaaggagtgttcgtgctt 376  Q
    |||||||||||| ||||| | | |||||| ||||| ||||||||||| |||| ||||||||||||||||    
T  25074841 tgtgtcggtgtctgacaccaacgcgtgtccgacactgggacacacctaatccgaggagtgttcgtgctt 25074909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 151 - 191
Target Start/End: Complemental strand, 46299804 - 46299764
Alignment:
Q  151 gggccagtatgagtagttatttcacgcggcaaactcgtaca 191  Q
    |||| ||||||||| ||||||||||||||||||||||||||    
T  46299804 gggcaagtatgagtggttatttcacgcggcaaactcgtaca 46299764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 281 - 376
Target Start/End: Original strand, 8842348 - 8842443
Alignment:
Q  281 gaaaatcacaaaatgcagtgtaattatatgtgtcggtgtcagacacgacacgtgtcggacacggggacacaccttatccaaggagtgttcgtgctt 376  Q
    |||||||||| |||   |||||||||||| ||||||||||||||||||||| |||  || |  | ||||| ||| |||| |||||||| |||||||    
T  8842348 gaaaatcacataatttggtgtaattatatatgtcggtgtcagacacgacacatgttagatattgagacacgcctaatccgaggagtgtccgtgctt 8842443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 311 - 350
Target Start/End: Complemental strand, 14338493 - 14338454
Alignment:
Q  311 tgtcggtgtcagacacgacacgtgtcggacacggggacac 350  Q
    ||||||||||||||||||||||| |||||||| |||||||    
T  14338493 tgtcggtgtcagacacgacacgtatcggacaccgggacac 14338454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 280 - 351
Target Start/End: Original strand, 45451571 - 45451642
Alignment:
Q  280 agaaaatcacaaaatgcagtgtaattatatgtgtcggtgtcagacacgacacgtgtcggacacggggacaca 351  Q
    ||||||||||| | | |||| |||| ||||||||||||||| |||||||||| |||| ||||| | ||||||    
T  45451571 agaaaatcacatacttcagtataataatatgtgtcggtgtcggacacgacacatgtccgacaccgagacaca 45451642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 310 - 368
Target Start/End: Complemental strand, 4987291 - 4987233
Alignment:
Q  310 gtgtcggtgtcagacacgacacgtgtcggacacggggacacaccttatccaaggagtgt 368  Q
    ||||||||||  ||||||||||||||| ||||| ||||||| ||| |||| ||||||||    
T  4987291 gtgtcggtgttggacacgacacgtgtccgacaccgggacacgcctaatccgaggagtgt 4987233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 310 - 376
Target Start/End: Original strand, 14209172 - 14209238
Alignment:
Q  310 gtgtcggtgtcagacacgacacgtgtcggacacggggacacaccttatccaaggagtgttcgtgctt 376  Q
    ||||||||||| ||||||||||||||  ||||  |||| |||||| ||||||| ||||| |||||||    
T  14209172 gtgtcggtgtcggacacgacacgtgtacgacatcgggatacacctaatccaagaagtgtccgtgctt 14209238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 316 - 378
Target Start/End: Complemental strand, 16192727 - 16192665
Alignment:
Q  316 gtgtcagacacgacacgtgtcggacacggggacacaccttatccaaggagtgttcgtgcttag 378  Q
    ||||||||||||||||||||| ||||| |||||| |||| ||   ||||||||| ||||||||    
T  16192727 gtgtcagacacgacacgtgtctgacaccgggacatacctaatatgaggagtgtttgtgcttag 16192665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 280 - 326
Target Start/End: Original strand, 20691337 - 20691383
Alignment:
Q  280 agaaaatcacaaaatgcagtgtaattatatgtgtcggtgtcagacac 326  Q
    ||||||| ||| ||| ||||||||| |||||||||||||||||||||    
T  20691337 agaaaatgacataattcagtgtaatcatatgtgtcggtgtcagacac 20691383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 310 - 376
Target Start/End: Complemental strand, 41961650 - 41961584
Alignment:
Q  310 gtgtcggtgtcagacacgacacgtgtcggacacggggacacaccttatccaaggagtgttcgtgctt 376  Q
    |||||||| || ||||||||||||||| ||||| ||||||| ||| |||| || ||||| |||||||    
T  41961650 gtgtcggtatcggacacgacacgtgtccgacactgggacacgcctaatccgagaagtgtccgtgctt 41961584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 376 - 406
Target Start/End: Complemental strand, 46299747 - 46299717
Alignment:
Q  376 tagctacacagtgttgcagaacagacatgca 406  Q
    |||||||||||||||||||||||||||||||    
T  46299747 tagctacacagtgttgcagaacagacatgca 46299717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 217 - 272
Target Start/End: Complemental strand, 750723 - 750667
Alignment:
Q  217 ggatacggacacggacaccgaaaacgacacggatac-ggacacgccgacacaactaa 272  Q
    |||||||||||||||||||| | |||||||||| ||  |||||| ||||||||||||    
T  750723 ggatacggacacggacaccggacacgacacggacacttgacacggcgacacaactaa 750667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 296 - 336
Target Start/End: Complemental strand, 6780444 - 6780404
Alignment:
Q  296 cagtgtaattatatgtgtcggtgtcagacacgacacgtgtc 336  Q
    |||||||||||||||||| |||||| ||||| |||||||||    
T  6780444 cagtgtaattatatgtgttggtgtcggacacaacacgtgtc 6780404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 316 - 376
Target Start/End: Original strand, 14216957 - 14217017
Alignment:
Q  316 gtgtcagacacgacacgtgtcggacacggggacacaccttatccaaggagtgttcgtgctt 376  Q
    ||||| ||||||||||||||  ||||| ||||||||||| |||| || ||||| |||||||    
T  14216957 gtgtcggacacgacacgtgtacgacactgggacacacctaatccgagaagtgtccgtgctt 14217017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 316 - 376
Target Start/End: Original strand, 14223086 - 14223146
Alignment:
Q  316 gtgtcagacacgacacgtgtcggacacggggacacaccttatccaaggagtgttcgtgctt 376  Q
    ||||| ||||||||||||||  ||||| ||||||||||| |||| || ||||| |||||||    
T  14223086 gtgtcggacacgacacgtgtacgacactgggacacacctaatccgagaagtgtccgtgctt 14223146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 316 - 376
Target Start/End: Original strand, 27505305 - 27505365
Alignment:
Q  316 gtgtcagacacgacacgtgtcggacacggggacacaccttatccaaggagtgttcgtgctt 376  Q
    ||||| ||||||||||||||| ||||| ||||||  ||| |||| |||||||| |||||||    
T  27505305 gtgtctgacacgacacgtgtccgacaccgggacatgcctaatccgaggagtgtccgtgctt 27505365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 100 - 128
Target Start/End: Complemental strand, 46300136 - 46300108
Alignment:
Q  100 ttaaaattcaataactattcattaatgat 128  Q
    |||||||||||||||||||||||||||||    
T  46300136 ttaaaattcaataactattcattaatgat 46300108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 70; Significance: 2e-31; HSPs: 41)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 217 - 376
Target Start/End: Complemental strand, 43737917 - 43737756
Alignment:
Q  217 ggatacggacacggacaccgaaaacgacacggatacggacac--gccgacacaactaannnnnnnagaaaatcacaaaatgcagtgtaattatatgtgtc 314  Q
    |||||| ||||||||||||| | |||||||||| || |||||  |||| |||| ||||        |||||||||||||| |||||||||||||||||||    
T  43737917 ggatacagacacggacaccggacacgacacggacaccgacacacgccggcacagctaaattttcttgaaaatcacaaaatacagtgtaattatatgtgtc 43737818  T
Q  315 ggtgtcagacacgacacgtgtcggacacggggacacaccttatccaaggagtgttcgtgctt 376  Q
    |||||| ||||||||| ||||| |||||||||| || ||||||||||||||||| |||||||    
T  43737817 ggtgtcggacacgacaggtgtctgacacggggatacgccttatccaaggagtgtccgtgctt 43737756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 282 - 376
Target Start/End: Complemental strand, 3951575 - 3951481
Alignment:
Q  282 aaaatcacaaaatgcagtgtaattatatgtgtcggtgtcagacacgacacgtgtcggacacggggacacaccttatccaaggagtgttcgtgctt 376  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| |||| ||| ||||||||||| | |||||||    
T  3951575 aaaatcacaaaatgcagtgtacttatatgtgtcggtgtcagacacgacacgtgtctgacacgggaacacgcctaatccaaggagtttccgtgctt 3951481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 14935622 - 14935562
Alignment:
Q  1 ccaagctactaactctagtttacctatcaactaaccatagttgattattcatactctaata 61  Q
    ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  14935622 ccaagttactaactctagtttacctatcaactaactatagttgattattcatactctaata 14935562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 310 - 376
Target Start/End: Complemental strand, 34451032 - 34450966
Alignment:
Q  310 gtgtcggtgtcagacacgacacgtgtcggacacggggacacaccttatccaaggagtgttcgtgctt 376  Q
    ||||||||||| ||||||||||||||| ||||||||||||| ||||||||||||||||| |||||||    
T  34451032 gtgtcggtgtcggacacgacacgtgtctgacacggggacacgccttatccaaggagtgtccgtgctt 34450966  T

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Target: chr8; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 217 - 376
Target Start/End: Complemental strand, 926892 - 926733
Alignment:
Q  217 ggatacggacacggacaccgaaaacgacacggatacggacacgccgacacaactaannnnnnnagaaaatcacaaaatgcagtgtaattatatgtgtcgg 316  Q
    ||||||| |||||||||||| | |||||||||| || |||||||| ||||  ||||       |||||||| ||   | ||||||||||||| |||||||    
T  926892 ggatacgaacacggacaccggacacgacacggacactgacacgccaacactcctaataatttgagaaaatctcattgttcagtgtaattataagtgtcgg 926793  T
Q  317 tgtcagacacgacacgtgtcggacacggggacacaccttatccaaggagtgttcgtgctt 376  Q
    |||| ||| ||||||||||| ||||| ||||||  | |||||| |||||||| |||||||    
T  926792 tgtcggacgcgacacgtgtccgacaccgggacatgctttatccgaggagtgtccgtgctt 926733  T

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Target: chr8; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 280 - 376
Target Start/End: Original strand, 3025569 - 3025665
Alignment:
Q  280 agaaaatcacaaaatgcagtgtaattatatgtgtcggtgtcagacacgacacgtgtcggacacggggacacaccttatccaaggagtgttcgtgctt 376  Q
    ||||||||||| ||| ||||||||||||| ||||| ||||| ||||||||||||||| ||||| | |||||  || |||| |||||||| |||||||    
T  3025569 agaaaatcacataattcagtgtaattataggtgtcagtgtcggacacgacacgtgtctgacactgtgacacggctaatccgaggagtgtccgtgctt 3025665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 280 - 368
Target Start/End: Complemental strand, 20679436 - 20679348
Alignment:
Q  280 agaaaatcacaaaatgcagtgtaattatatgtgtcggtgtcagacacgacacgtgtcggacacggggacacaccttatccaaggagtgt 368  Q
    ||||||||||| | | ||||||||||||| ||||||||||||||| | ||||||||| ||||| ||||||| ||||| || ||||||||    
T  20679436 agaaaatcacatagttcagtgtaattataagtgtcggtgtcagacgcaacacgtgtccgacaccgggacacgccttaaccgaggagtgt 20679348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 280 - 373
Target Start/End: Original strand, 14134717 - 14134810
Alignment:
Q  280 agaaaatcacaaaatgcagtgtaattatatgtgtcggtgtcagacacgacacgtgtcggacacggggacacaccttatccaaggagtgttcgtg 373  Q
    ||||||||||| ||| |||||||||||||| ||||||||||| |||||||||||||| | |||  |||||| ||| || | |||||||| ||||    
T  14134717 agaaaatcacataattcagtgtaattatatatgtcggtgtcaaacacgacacgtgtccgtcaccaggacacgcctaattcgaggagtgtccgtg 14134810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 242 - 368
Target Start/End: Complemental strand, 36450833 - 36450707
Alignment:
Q  242 gacacggatacggacacgccgacacaactaannnnnnnagaaaatcacaaaatgcagtgtaattatatgtgtcggtgtcagacacgacacgtgtcggaca 341  Q
    |||||||| || |||||||||||||||||||       | ||||||||| ||| ||||||||||| | |||| |||||| |||||||| |||||| ||||    
T  36450833 gacacggacactgacacgccgacacaactaataatttgaaaaaatcacagaattcagtgtaattacaagtgtaggtgtcggacacgacgcgtgtccgaca 36450734  T
Q  342 cggggacacaccttatccaaggagtgt 368  Q
    |  |||||| ||| |||| ||||||||    
T  36450733 ccaggacacgcctaatccgaggagtgt 36450707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 280 - 375
Target Start/End: Complemental strand, 33405425 - 33405330
Alignment:
Q  280 agaaaatcacaaaatgcagtgtaattatatgtgtcggtgtcagacacgacacgtgtcggacacggggacacaccttatccaaggagtgttcgtgct 375  Q
    |||||| |||| |||  |||||||||||||||||||||||| |||||||||| |||| |||||  ||||||  || |||||| |||||| ||||||    
T  33405425 agaaaaacacataatttagtgtaattatatgtgtcggtgtcggacacgacacatgtctgacacctggacacggctaatccaatgagtgtccgtgct 33405330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 281 - 320
Target Start/End: Complemental strand, 34451077 - 34451038
Alignment:
Q  281 gaaaatcacaaaatgcagtgtaattatatgtgtcggtgtc 320  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  34451077 gaaaatcacaaaatgcagtgtaattatatgtgtcggtgtc 34451038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 310 - 376
Target Start/End: Complemental strand, 29510304 - 29510238
Alignment:
Q  310 gtgtcggtgtcagacacgacacgtgtcggacacggggacacaccttatccaaggagtgttcgtgctt 376  Q
    ||||||||||| |||||||| |||||| ||||| ||||||||||| |||| |||||||| |||||||    
T  29510304 gtgtcggtgtcggacacgacgcgtgtccgacaccgggacacacctaatccgaggagtgtccgtgctt 29510238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 30224275 - 30224229
Alignment:
Q  1 ccaagctactaactctagtttacctatcaactaaccatagttgatta 47  Q
    ||||||||||||||||||||||| ||||||||||| |||||||||||    
T  30224275 ccaagctactaactctagtttacttatcaactaactatagttgatta 30224229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 282 - 368
Target Start/End: Original strand, 31557016 - 31557102
Alignment:
Q  282 aaaatcacaaaatgcagtgtaattatatgtgtcggtgtcagacacgacacgtgtcggacacggggacacaccttatccaaggagtgt 368  Q
    ||||||||| ||| ||||||||||| | || ||||||||||||||||||| |||| |||||  |||||| ||| |||||||| ||||    
T  31557016 aaaatcacataattcagtgtaattacaagtttcggtgtcagacacgacacatgtccgacaccaggacacgcctaatccaaggtgtgt 31557102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 210 - 320
Target Start/End: Complemental strand, 2572167 - 2572057
Alignment:
Q  210 gaagaatggatacggacacggacaccgaaaacgacacggatacggacacgccgacacaactaannnnnnnagaaaatcacaaaatgcagtgtaattatat 309  Q
    |||| |||||||||||||||||||| | | ||||||||||||| |||||| ||||||| ||||       | ||||||||| |||  |||||||||| |     
T  2572167 gaagcatggatacggacacggacactggacacgacacggataccgacacgtcgacacacctaataatttgaaaaaatcacataatttagtgtaattacaa 2572068  T
Q  310 gtgtcggtgtc 320  Q
    |||||||||||    
T  2572067 gtgtcggtgtc 2572057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 280 - 373
Target Start/End: Original strand, 40332209 - 40332302
Alignment:
Q  280 agaaaatcacaaaatgcagtgtaattatatgtgtcggtgtcagacacgacacgtgtcggacacggggacacaccttatccaaggagtgttcgtg 373  Q
    ||||||||||| ||| ||||||||||| | ||||||||||  |||||||||||||||  |||| ||||| | ||| |||| |||||||| ||||    
T  40332209 agaaaatcacataattcagtgtaattacaagtgtcggtgtgggacacgacacgtgtcccacaccgggacgcgcctaatccgaggagtgtccgtg 40332302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 3 - 47
Target Start/End: Complemental strand, 5567469 - 5567425
Alignment:
Q  3 aagctactaactctagtttacctatcaactaaccatagttgatta 47  Q
    |||||||||||||||||||| |||||||||||| |||||||||||    
T  5567469 aagctactaactctagtttagctatcaactaactatagttgatta 5567425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 296 - 368
Target Start/End: Original strand, 8293859 - 8293931
Alignment:
Q  296 cagtgtaattatatgtgtcggtgtcagacacgacacgtgtcggacacggggacacaccttatccaaggagtgt 368  Q
    |||||||||||||||||||||||||| ||| ||||| | || |||||  |||||||||| |||| ||||||||    
T  8293859 cagtgtaattatatgtgtcggtgtcaaacatgacacatatctgacacctggacacacctaatccgaggagtgt 8293931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 280 - 335
Target Start/End: Complemental strand, 4786379 - 4786324
Alignment:
Q  280 agaaaatcacaaaatgcagtgtaattatatgtgtcggtgtcagacacgacacgtgt 335  Q
    ||||||||||| ||| ||||||||||||||||||||||||| || |||||| ||||    
T  4786379 agaaaatcacataattcagtgtaattatatgtgtcggtgtcggatacgacatgtgt 4786324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 3375609 - 3375655
Alignment:
Q  1 ccaagctactaactctagtttacctatcaactaaccatagttgatta 47  Q
    ||||||||||||| ||||||||| ||||||||||| |||||||||||    
T  3375609 ccaagctactaaccctagtttacttatcaactaactatagttgatta 3375655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 31032185 - 31032231
Alignment:
Q  1 ccaagctactaactctagtttacctatcaactaaccatagttgatta 47  Q
    ||||||||||||| ||||||||| ||||||||||| |||||||||||    
T  31032185 ccaagctactaaccctagtttacttatcaactaactatagttgatta 31032231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 6 - 47
Target Start/End: Original strand, 3379305 - 3379346
Alignment:
Q  6 ctactaactctagtttacctatcaactaaccatagttgatta 47  Q
    ||||||||||||||||| |||||||||||| |||||||||||    
T  3379305 ctactaactctagtttaactatcaactaactatagttgatta 3379346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 210 - 267
Target Start/End: Original strand, 24857957 - 24858014
Alignment:
Q  210 gaagaatggatacggacacggacaccgaaaacgacacggatacggacacgccgacaca 267  Q
    |||||| ||||||||||||| |||||| | |||||||||| | |||||||||||||||    
T  24857957 gaagaacggatacggacacgaacaccggacacgacacggacatggacacgccgacaca 24858014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 280 - 376
Target Start/End: Complemental strand, 26902216 - 26902109
Alignment:
Q  280 agaaaatcacaaaatgcagtgtaattatatgtgtcggtgtca-----------gacacgacacgtgtcggacacggggacacaccttatccaaggagtgt 368  Q
    ||||||||||| ||| |||||||||||||||||||||||||            ||||||||||||||| | ||||||||||| |||||||  ||||||||    
T  26902216 agaaaatcacataattcagtgtaattatatgtgtcggtgtcgtatgagtgtcggacacgacacgtgtctggcacggggacacgccttatctgaggagtgt 26902117  T
Q  369 tcgtgctt 376  Q
     |||||||    
T  26902116 ccgtgctt 26902109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 242 - 328
Target Start/End: Complemental strand, 31236656 - 31236570
Alignment:
Q  242 gacacggatacggacacgccgacacaactaannnnnnnagaaaatcacaaaatgcagtgtaattatatgtgtcggtgtcagacacga 328  Q
    |||| ||||||||||||||||||||  ||||       ||||||||||| ||| || |||||||||||||||||||| | |||||||    
T  31236656 gacaaggatacggacacgccgacactgctaataatttgagaaaatcacataattcaatgtaattatatgtgtcggtgacggacacga 31236570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 284 - 336
Target Start/End: Complemental strand, 9414912 - 9414860
Alignment:
Q  284 aatcacaaaatgcagtgtaattatatgtgtcggtgtcagacacgacacgtgtc 336  Q
    ||||||| ||| ||||| ||||||| |||| ||||||||||||||||||||||    
T  9414912 aatcacataattcagtgcaattataagtgttggtgtcagacacgacacgtgtc 9414860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 297 - 376
Target Start/End: Original strand, 5813627 - 5813706
Alignment:
Q  297 agtgtaattatatgtgtcggtgtcagacacgacacgtgtcggacacggggacacaccttatccaaggagtgttcgtgctt 376  Q
    ||||||| || | ||||||||||| ||||||||||||||| ||||| ||||||| ||| ||   |||||||| |||||||    
T  5813627 agtgtaaatacaagtgtcggtgtcggacacgacacgtgtccgacaccgggacacgcctaattggaggagtgtccgtgctt 5813706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 217 - 272
Target Start/End: Original strand, 22651931 - 22651986
Alignment:
Q  217 ggatacggacacggacaccgaaaacgacacggatacggacacgccgacacaactaa 272  Q
    |||||||||||| ||||||| | |||||||||| || |||||||||||||| ||||    
T  22651931 ggatacggacactgacaccggacacgacacggacactgacacgccgacacagctaa 22651986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 299 - 373
Target Start/End: Complemental strand, 126369 - 126295
Alignment:
Q  299 tgtaattatatgtgtcggtgtcagacacgacacgtgtcggacacggggacacaccttatccaaggagtgttcgtg 373  Q
    |||||||||||||||| ||||| |||||||||||||||  | || |||||||  || |||| |||||||| ||||    
T  126369 tgtaattatatgtgtcagtgtcggacacgacacgtgtccaataccgggacacggctaatccgaggagtgtccgtg 126295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 282 - 320
Target Start/End: Complemental strand, 11927125 - 11927087
Alignment:
Q  282 aaaatcacaaaatgcagtgtaattatatgtgtcggtgtc 320  Q
    ||||||||| ||| |||||||||||||||||||||||||    
T  11927125 aaaatcacataattcagtgtaattatatgtgtcggtgtc 11927087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 280 - 326
Target Start/End: Complemental strand, 13844637 - 13844591
Alignment:
Q  280 agaaaatcacaaaatgcagtgtaattatatgtgtcggtgtcagacac 326  Q
    ||||||||||| |||  |||||||||||||||||||||||| |||||    
T  13844637 agaaaatcacataattgagtgtaattatatgtgtcggtgtcggacac 13844591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 310 - 376
Target Start/End: Original strand, 22652035 - 22652101
Alignment:
Q  310 gtgtcggtgtcagacacgacacgtgtcggacacggggacacaccttatccaaggagtgttcgtgctt 376  Q
    ||||||||||| ||||||||| ||||| ||||| |||||||  || |||| |||||||| |||||||    
T  22652035 gtgtcggtgtcggacacgacatgtgtccgacaccgggacacgtctaatccgaggagtgtccgtgctt 22652101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 280 - 326
Target Start/End: Original strand, 34897103 - 34897149
Alignment:
Q  280 agaaaatcacaaaatgcagtgtaattatatgtgtcggtgtcagacac 326  Q
    ||||||||||| ||| |||||||||||||||||||| |||| |||||    
T  34897103 agaaaatcacataattcagtgtaattatatgtgtcgatgtcggacac 34897149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 283 - 320
Target Start/End: Original strand, 8847277 - 8847314
Alignment:
Q  283 aaatcacaaaatgcagtgtaattatatgtgtcggtgtc 320  Q
    |||||||| ||| |||||||||||||||||||||||||    
T  8847277 aaatcacataattcagtgtaattatatgtgtcggtgtc 8847314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 280 - 325
Target Start/End: Complemental strand, 12606870 - 12606825
Alignment:
Q  280 agaaaatcacaaaatgcagtgtaattatatgtgtcggtgtcagaca 325  Q
    ||||||||| | ||| || |||||||||||||||||||||||||||    
T  12606870 agaaaatcatataattcaatgtaattatatgtgtcggtgtcagaca 12606825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 280 - 336
Target Start/End: Complemental strand, 37283851 - 37283797
Alignment:
Q  280 agaaaatcacaaaatgcagtgtaattatatgtgtcggtgtcagacacgacacgtgtc 336  Q
    ||||||||||| ||| ||||||||||||  ||||||||||  |||||||||||||||    
T  37283851 agaaaatcacataattcagtgtaattat--gtgtcggtgtgggacacgacacgtgtc 37283797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 301 - 350
Target Start/End: Complemental strand, 44462215 - 44462166
Alignment:
Q  301 taattatatgtgtcggtgtcagacacgacacgtgtcggacacggggacac 350  Q
    |||| ||||||||||||||||||||||| || |||| ||||| |||||||    
T  44462215 taatcatatgtgtcggtgtcagacacgatacatgtccgacaccgggacac 44462166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 301 - 350
Target Start/End: Complemental strand, 44469748 - 44469699
Alignment:
Q  301 taattatatgtgtcggtgtcagacacgacacgtgtcggacacggggacac 350  Q
    |||| ||||||||||||||||||||||| || |||| ||||| |||||||    
T  44469748 taatcatatgtgtcggtgtcagacacgatacatgtccgacaccgggacac 44469699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #39
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 7 - 47
Target Start/End: Complemental strand, 6428779 - 6428739
Alignment:
Q  7 tactaactctagtttacctatcaactaaccatagttgatta 47  Q
    ||||||||||||||||| ||||||||||  |||||||||||    
T  6428779 tactaactctagtttacttatcaactaattatagttgatta 6428739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #40
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 220 - 272
Target Start/End: Complemental strand, 24196698 - 24196646
Alignment:
Q  220 tacggacacggacaccgaaaacgacacggatacggacacgccgacacaactaa 272  Q
    |||||| || ||||||||| |||| ||||| || |||||||||||||||||||    
T  24196698 tacggatacagacaccgaatacgatacggacaccgacacgccgacacaactaa 24196646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #41
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 280 - 376
Target Start/End: Complemental strand, 31580168 - 31580072
Alignment:
Q  280 agaaaatcacaaaatgcagtgtaattatatgtgtcggtgtcagacacgacacgtgtcggacacggggacacaccttatccaaggagtgttcgtgctt 376  Q
    ||||||||||| |||  |||||||||||| |||||| |||| ||| |||||| |||  ||||| |  |||||||| |||| ||| |||||| |||||    
T  31580168 agaaaatcacataattgagtgtaattataggtgtcgatgtcggacgcgacacatgttcgacaccgaaacacacctaatccgaggggtgttcatgctt 31580072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 69; Significance: 9e-31; HSPs: 34)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 280 - 376
Target Start/End: Original strand, 24009314 - 24009409
Alignment:
Q  280 agaaaatcacaaaatgcagtgtaattatatgtgtcggtgtcagacacgacacgtgtcggacacggggacacaccttatccaaggagtgttcgtgctt 376  Q
    |||||||||||||||||||||||| | |||||||||||||| ||||||||||||||| ||||||||||||| ||||||||||||||||| |||||||    
T  24009314 agaaaatcacaaaatgcagtgtaaat-tatgtgtcggtgtcggacacgacacgtgtctgacacggggacacgccttatccaaggagtgtccgtgctt 24009409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 240 - 368
Target Start/End: Complemental strand, 20242808 - 20242680
Alignment:
Q  240 acgacacggatacggacacgccgacacaactaannnnnnnagaaaatcacaaaatgcagtgtaattatatgtgtcggtgtcagacacgacacgtgtcgga 339  Q
    |||||| ||| || |||||||||||||||||||       ||||||||||| ||| ||||||||||||||||||||||||| ||||| ||||||||| ||    
T  20242808 acgacatggacactgacacgccgacacaactaatttttttagaaaatcacataattcagtgtaattatatgtgtcggtgtcggacacaacacgtgtctga 20242709  T
Q  340 cacggggacacaccttatccaaggagtgt 368  Q
    |||| |||||| |||||||| | ||||||    
T  20242708 cacgaggacacgccttatccgaagagtgt 20242680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 297 - 376
Target Start/End: Complemental strand, 18841037 - 18840958
Alignment:
Q  297 agtgtaattatatgtgtcggtgtcagacacgacacgtgtcggacacggggacacaccttatccaaggagtgttcgtgctt 376  Q
    |||||||||| | |||||||||||||||||||||| |||| ||||| ||||||||||| |||| |||||||| |||||||    
T  18841037 agtgtaattacaagtgtcggtgtcagacacgacacatgtccgacaccgggacacacctaatccgaggagtgtccgtgctt 18840958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 282 - 376
Target Start/End: Complemental strand, 2438758 - 2438664
Alignment:
Q  282 aaaatcacaaaatgcagtgtaattatatgtgtcggtgtcagacacgacacgtgtcggacacggggacacaccttatccaaggagtgttcgtgctt 376  Q
    ||||||||| ||| ||||||||||| | ||||||||||| |||||||||| |||| ||||| ||||||| ||| |||| |||||||| |||||||    
T  2438758 aaaatcacataattcagtgtaattacaagtgtcggtgtcggacacgacacatgtccgacaccgggacacgcctaatccgaggagtgtccgtgctt 2438664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 251 - 376
Target Start/End: Complemental strand, 36096445 - 36096309
Alignment:
Q  251 acggacacgccgacacaactaannnnnnnagaaaatcacaaaatgcagtgtaattatat-----------gtgtcggtgtcagacacgacacgtgtcgga 339  Q
    ||||||||||||||||| ||||       ||||||||||||||||||||||||||||||           |||||| |||| ||||||||||||||| ||    
T  36096445 acggacacgccgacacagctaaattttttagaaaatcacaaaatgcagtgtaattatatttgtcggtgtcgtgtcgatgtcggacacgacacgtgtctga 36096346  T
Q  340 cacggggacacaccttatccaaggagtgttcgtgctt 376  Q
    ||||||||||| ||||| |||| |||||| |||||||    
T  36096345 cacggggacacgccttaaccaaagagtgtccgtgctt 36096309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 296 - 376
Target Start/End: Original strand, 28596503 - 28596583
Alignment:
Q  296 cagtgtaattatatgtgtcggtgtcagacacgacacgtgtcggacacggggacacaccttatccaaggagtgttcgtgctt 376  Q
    ||||||||||||| ||||||||||| ||||||||||||||| |||||  |||||| ||| |||| |||||||| |||||||    
T  28596503 cagtgtaattataagtgtcggtgtcggacacgacacgtgtccgacactcggacactcctaatccgaggagtgtccgtgctt 28596583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 240 - 376
Target Start/End: Original strand, 15972851 - 15972987
Alignment:
Q  240 acgacacggatacggacacgccgacacaactaannnnnnnagaaaatcacaaaatgcagtgtaattatatgtgtcggtgtcagacacgacacgtgtcgga 339  Q
    |||||||||| || ||||||||||||||| |||       | ||||| ||| ||| ||||||||||| | ||||||||||| ||||||||||||||| ||    
T  15972851 acgacacggacactgacacgccgacacaattaataatttgaaaaaattacacaattcagtgtaattacaagtgtcggtgtcggacacgacacgtgtccga 15972950  T
Q  340 cacggggacacaccttatccaaggagtgttcgtgctt 376  Q
    | | ||||||||||| |||| | || ||| |||||||    
T  15972951 cgccgggacacacctaatccgaagaatgtccgtgctt 15972987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 282 - 376
Target Start/End: Original strand, 12224243 - 12224337
Alignment:
Q  282 aaaatcacaaaatgcagtgtaattatatgtgtcggtgtcagacacgacacgtgtcggacacggggacacaccttatccaaggagtgttcgtgctt 376  Q
    |||||| || ||| || |||||||| | ||||||||||| ||||||| ||||||| ||||| ||||||| ||| |||||||||||||| ||||||    
T  12224243 aaaatcccataatccaatgtaattacaagtgtcggtgtcggacacgatacgtgtccgacactgggacacgcctaatccaaggagtgtttgtgctt 12224337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 218 - 320
Target Start/End: Complemental strand, 34785085 - 34784983
Alignment:
Q  218 gatacggacacggacaccgaaaacgacacggatacggacacgccgacacaactaannnnnnnagaaaatcacaaaatgcagtgtaattatatgtgtcggt 317  Q
    ||||||||||||||| ||  | |||||||||| || ||||| |||||||||||||       ||||||||||| |||  |||||||||||||||||||||    
T  34785085 gatacggacacggaccccagacacgacacggacactgacacaccgacacaactaatttttttagaaaatcacataatttagtgtaattatatgtgtcggt 34784986  T
Q  318 gtc 320  Q
    |||    
T  34784985 gtc 34784983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 299 - 376
Target Start/End: Complemental strand, 34994004 - 34993927
Alignment:
Q  299 tgtaattatatgtgtcggtgtcagacacgacacgtgtcggacacggggacacaccttatccaaggagtgttcgtgctt 376  Q
    |||||||||||||||| |||||  |||||||| ||||| ||||| ||||||| ||| || ||||||||||||||||||    
T  34994004 tgtaattatatgtgtcagtgtcgaacacgacatgtgtccgacactgggacacgcctaattcaaggagtgttcgtgctt 34993927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 210 - 336
Target Start/End: Complemental strand, 40361865 - 40361739
Alignment:
Q  210 gaagaatggatacggacacggacaccgaaaacgacacggatacggacacgccgacacaactaannnnnnnagaaaatcacaaaatgcagtgtaattatat 309  Q
    |||| ||||||||||||||||| |||||| ||||||| |||||||||||   ||||| | |||       | ||||| ||| |||  |||||||||||||    
T  40361865 gaagcatggatacggacacggataccgaacacgacacagatacggacactatgacactattaataatttgaaaaaattacataatttagtgtaattatat 40361766  T
Q  310 gtgtcggtgtcagacacgacacgtgtc 336  Q
     ||| ||||||||||||||||||||||    
T  40361765 ctgttggtgtcagacacgacacgtgtc 40361739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 283 - 362
Target Start/End: Original strand, 5367213 - 5367292
Alignment:
Q  283 aaatcacaaaatgcagtgtaattatatgtgtcggtgtcagacacgacacgtgtcggacacggggacacaccttatccaag 362  Q
    |||||||| ||| ||||||||||||||||||||||||| |||||||||| | || ||| | ||||||| ||| |||||||    
T  5367213 aaatcacataattcagtgtaattatatgtgtcggtgtcggacacgacacatatccgactccgggacacgcctaatccaag 5367292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 29758165 - 29758119
Alignment:
Q  1 ccaagctactaactctagtttacctatcaactaaccatagttgatta 47  Q
    ||||||||||||||||||||||| ||||||||||| |||||||||||    
T  29758165 ccaagctactaactctagtttacttatcaactaactatagttgatta 29758119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 282 - 373
Target Start/End: Original strand, 5040754 - 5040845
Alignment:
Q  282 aaaatcacaaaatgcagtgtaattatatgtgtcggtgtcagacacgacacgtgtcggacacggggacacaccttatccaaggagtgttcgtg 373  Q
    ||||||||| ||| || |||||||| | ||||||||||| ||||||||| ||||| ||| | ||||||| |||  |||||||||||| ||||    
T  5040754 aaaatcacataattcaatgtaattacaagtgtcggtgtcggacacgacatgtgtccgacgccgggacacgcctagtccaaggagtgtccgtg 5040845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 280 - 367
Target Start/End: Complemental strand, 37411285 - 37411198
Alignment:
Q  280 agaaaatcacaaaatgcagtgtaattatatgtgtcggtgtcagacacgacacgtgtcggacacggggacacaccttatccaaggagtg 367  Q
    ||||||||||| ||| |||||| ||||||||||||| ||||  ||||||| |||||| ||||| ||||||| |||  ||| |||||||    
T  37411285 agaaaatcacataattcagtgtgattatatgtgtcgatgtcgaacacgacgcgtgtccgacactgggacacgcctagtccgaggagtg 37411198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 218 - 320
Target Start/End: Complemental strand, 18054907 - 18054804
Alignment:
Q  218 gatacggacacggacaccgaaaacgacacggatacggacacgccgacacaactaannnnnnn-agaaaatcacaaaatgcagtgtaattatatgtgtcgg 316  Q
    ||||| ||||||||||||| | |||||| ||| || |||||| ||||||| ||||        ||||||||||||| |||||||||||||||||||| ||    
T  18054907 gatacagacacggacaccggacacgacagggacaccgacacgtcgacacagctaattttttttagaaaatcacaaactgcagtgtaattatatgtgttgg 18054808  T
Q  317 tgtc 320  Q
    ||||    
T  18054807 tgtc 18054804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 286 - 372
Target Start/End: Complemental strand, 29176528 - 29176442
Alignment:
Q  286 tcacaaaatgcagtgtaattatatgtgtcggtgtcagacacgacacgtgtcggacacggggacacaccttatccaaggagtgttcgt 372  Q
    ||||| ||| ||||||||||||| |||| |||||  |||||| ||| |||| ||||| | ||||||||| ||||||| |||||||||    
T  29176528 tcacataattcagtgtaattataagtgttggtgttggacacggcacatgtccgacactgagacacacctaatccaagaagtgttcgt 29176442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 311 - 376
Target Start/End: Original strand, 26769571 - 26769636
Alignment:
Q  311 tgtcggtgtcagacacgacacgtgtcggacacggggacacaccttatccaaggagtgttcgtgctt 376  Q
    ||||||| || ||||||||||||||| ||||| ||||||| ||| |||| |||||||| |||||||    
T  26769571 tgtcggtatcggacacgacacgtgtccgacactgggacacgcctaatccgaggagtgtccgtgctt 26769636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 243 - 368
Target Start/End: Original strand, 41843422 - 41843552
Alignment:
Q  243 acacggatacggacacgccgacacaactaannnnnnnagaaaatcacaaaatgcagtgtaattatatgtgtcggtgt-----cagacacgacacgtgtcg 337  Q
    ||||||| || |||||||||||| ||||||       || |||||||| ||| | || |||||||||||||||||||     | ||| |||||||||||     
T  41843422 acacggacactgacacgccgacaaaactaaattttttaggaaatcacataattcggtataattatatgtgtcggtgttgtgtcggacgcgacacgtgtcc 41843521  T
Q  338 gacacggggacacaccttatccaaggagtgt 368  Q
    ||||||||||||| | |||||| ||||||||    
T  41843522 gacacggggacacgctttatccgaggagtgt 41843552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 296 - 376
Target Start/End: Original strand, 21091757 - 21091837
Alignment:
Q  296 cagtgtaattatatgtgtcggtgtcagacacgacacgtgtcggacacggggacacaccttatccaaggagtgttcgtgctt 376  Q
    ||||||||||| | ||||| |||||||||| | ||| |||||||||| |||||||||||  ||| | |||||| |||||||    
T  21091757 cagtgtaattacaagtgtcagtgtcagacaagccacctgtcggacaccgggacacacctattccgaagagtgtccgtgctt 21091837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 280 - 335
Target Start/End: Original strand, 18276539 - 18276594
Alignment:
Q  280 agaaaatcacaaaatgcagtgtaattatatgtgtcggtgtcagacacgacacgtgt 335  Q
    ||||||||||  ||| |||||||||||| ||||||||||||||| || ||||||||    
T  18276539 agaaaatcacttaattcagtgtaattatgtgtgtcggtgtcagataccacacgtgt 18276594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 282 - 361
Target Start/End: Original strand, 31808097 - 31808176
Alignment:
Q  282 aaaatcacaaaatgcagtgtaattatatgtgtcggtgtcagacacgacacgtgtcggacacggggacacaccttatccaa 361  Q
    ||||||||| ||| ||||||||||||||||||| ||||   ||||||||| |||  |||||  |||||||||| ||||||    
T  31808097 aaaatcacataattcagtgtaattatatgtgtcagtgttgaacacgacacatgttcgacacctggacacacctaatccaa 31808176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 310 - 376
Target Start/End: Complemental strand, 30717530 - 30717464
Alignment:
Q  310 gtgtcggtgtcagacacgacacgtgtcggacacggggacacaccttatccaaggagtgttcgtgctt 376  Q
    |||||| |||| ||||||||||||||  ||||| |||| || ||| ||||||||||||| |||||||    
T  30717530 gtgtcgttgtcggacacgacacgtgttcgacactgggatacgcctaatccaaggagtgtccgtgctt 30717464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 310 - 376
Target Start/End: Original strand, 35056927 - 35056993
Alignment:
Q  310 gtgtcggtgtcagacacgacacgtgtcggacacggggacacaccttatccaaggagtgttcgtgctt 376  Q
    ||||||||||| ||||||||||||||| |||||||  |||| ||| |||  |||||||| |||||||    
T  35056927 gtgtcggtgtcggacacgacacgtgtccgacacggaaacacgcctaatctgaggagtgtccgtgctt 35056993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 310 - 376
Target Start/End: Original strand, 37419802 - 37419868
Alignment:
Q  310 gtgtcggtgtcagacacgacacgtgtcggacacggggacacaccttatccaaggagtgttcgtgctt 376  Q
    ||||||||||| |||||||  |||||| ||||| ||||||| ||| |||| |||||||| |||||||    
T  37419802 gtgtcggtgtcggacacgatgcgtgtccgacaccgggacacgcctaatccgaggagtgtccgtgctt 37419868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 282 - 376
Target Start/End: Original strand, 37558997 - 37559091
Alignment:
Q  282 aaaatcacaaaatgcagtgtaattatatgtgtcggtgtcagacacgacacgtgtcggacacggggacacaccttatccaaggagtgttcgtgctt 376  Q
    ||||||||| ||| || |||||||| | ||||||||||| |||  |||||||||| ||||| || |||| | | |||| |||||||| |||||||    
T  37558997 aaaatcacataattcaatgtaattacaagtgtcggtgtcggacttgacacgtgtccgacaccggtacacgcttaatccgaggagtgtccgtgctt 37559091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 282 - 350
Target Start/End: Original strand, 28677929 - 28678002
Alignment:
Q  282 aaaatcacaaaatgcagtgtaattatatgt-----gtcggtgtcagacacgacacgtgtcggacacggggacac 350  Q
    ||||||||| ||| ||||||||||||||||     |||||||||| |||||||| ||||| ||||| |||||||    
T  28677929 aaaatcacataattcagtgtaattatatgttcggtgtcggtgtcaaacacgacaagtgtccgacacagggacac 28678002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 282 - 327
Target Start/End: Complemental strand, 34691844 - 34691799
Alignment:
Q  282 aaaatcacaaaatgcagtgtaattatatgtgtcggtgtcagacacg 327  Q
    ||||||| | ||| ||||||||||||||||||||||||| ||||||    
T  34691844 aaaatcatataattcagtgtaattatatgtgtcggtgtcggacacg 34691799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 282 - 327
Target Start/End: Complemental strand, 34714256 - 34714211
Alignment:
Q  282 aaaatcacaaaatgcagtgtaattatatgtgtcggtgtcagacacg 327  Q
    ||||||| | ||| ||||||||||||||||||||||||| ||||||    
T  34714256 aaaatcatataattcagtgtaattatatgtgtcggtgtcggacacg 34714211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 280 - 321
Target Start/End: Complemental strand, 38355928 - 38355887
Alignment:
Q  280 agaaaatcacaaaatgcagtgtaattatatgtgtcggtgtca 321  Q
    ||||||||||| ||| |||||| |||||||||||||||||||    
T  38355928 agaaaatcacataattcagtgtgattatatgtgtcggtgtca 38355887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 6 - 54
Target Start/End: Complemental strand, 18739712 - 18739664
Alignment:
Q  6 ctactaactctagtttacctatcaactaaccatagttgattattcatac 54  Q
    ||||||||||||||| || ||||||||||| ||| ||||||| ||||||    
T  18739712 ctactaactctagttaacgtatcaactaactataattgattaatcatac 18739664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 280 - 320
Target Start/End: Complemental strand, 18889632 - 18889592
Alignment:
Q  280 agaaaatcacaaaatgcagtgtaattatatgtgtcggtgtc 320  Q
    ||||||||||| ||| ||||||||| |||||||||||||||    
T  18889632 agaaaatcacataattcagtgtaatcatatgtgtcggtgtc 18889592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 282 - 342
Target Start/End: Complemental strand, 30404889 - 30404829
Alignment:
Q  282 aaaatcacaaaatgcagtgtaattatatgtgtcggtgtcagacacgacacgtgtcggacac 342  Q
    ||||||||| ||| ||||||||||| | ||||||| ||| |||||||||| |||| |||||    
T  30404889 aaaatcacataattcagtgtaattacaagtgtcggcgtcggacacgacacatgtccgacac 30404829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 280 - 320
Target Start/End: Original strand, 44860338 - 44860378
Alignment:
Q  280 agaaaatcacaaaatgcagtgtaattatatgtgtcggtgtc 320  Q
    |||||||| || ||| |||||||||||||||||||||||||    
T  44860338 agaaaatcgcataattcagtgtaattatatgtgtcggtgtc 44860378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 68; Significance: 4e-30; HSPs: 52)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 217 - 376
Target Start/End: Original strand, 18367792 - 18367961
Alignment:
Q  217 ggatacggacacggacaccgaaaacgacacggatacggacacgccgacacaactaannnnnnnagaaaatcacaaaatgcagtgtaattatat------- 309  Q
    |||||||||||||||||||| | |||||| ||| ||| ||||||||||||| ||||       ||||||||||||||||||||||||||||||           
T  18367792 ggatacggacacggacaccggacacgacatggacacg-acacgccgacacagctaatttttttagaaaatcacaaaatgcagtgtaattatatgtgtcgg 18367890  T
Q  310 ----gtgtcggtgtcagacacgacacgtgtcggacacggggacacaccttatccaaggagtgttcgtgctt 376  Q
        |||||||||||||||||||||| |||| ||||||||||||| ||||||||||||||||| |||||||    
T  18367891 tgtcgtgtcggtgtcagacacgacacatgtctgacacggggacacgccttatccaaggagtgtccgtgctt 18367961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 226 - 376
Target Start/End: Original strand, 34595098 - 34595248
Alignment:
Q  226 cacggacaccgaaaacgacacggatacggacacgccgacacaactaannnnnnnagaaaatcacaaaatgcagtgtaattatatgtgtcggtgtcagaca 325  Q
    ||||||||||| | |||||||||| |  |||||||||||||||||||       | ||||||||| ||| ||||||||||| | ||||||||||| ||||    
T  34595098 cacggacaccggacacgacacggacaatgacacgccgacacaactaataatttgaaaaaatcacataattcagtgtaattacaagtgtcggtgtcggaca 34595197  T
Q  326 cgacacgtgtcggacacggggacacaccttatccaaggagtgttcgtgctt 376  Q
    ||||||||||| ||||| ||||||||||| |||| |||||||| |||||||    
T  34595198 cgacacgtgtctgacaccgggacacacctaatccgaggagtgtccgtgctt 34595248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 33869291 - 33869231
Alignment:
Q  1 ccaagctactaactctagtttacctatcaactaaccatagttgattattcatactctaata 61  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  33869291 ccaagctactaactctagtttacctatcaactaactatagttgattattcatactctaata 33869231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 217 - 376
Target Start/End: Complemental strand, 8777077 - 8776913
Alignment:
Q  217 ggatacggacacggacaccgaaaacgacacggatacggacacgccgacacaactaannnnnnnagaaaatcacaaaatgcagtgtaattatatgtgtcgg 316  Q
    ||||||||||||||||| || | |||||||||| || |||||||||||||||||||       | ||||||||||||| ||||||||||| | |||| ||    
T  8777077 ggatacggacacggacaacggacacgacacggacactgacacgccgacacaactaataatttgaaaaaatcacaaaattcagtgtaattacaagtgttgg 8776978  T
Q  317 tgtcagacacga-----cacgtgtcggacacggggacacaccttatccaaggagtgttcgtgctt 376  Q
    |||| |||||||     |||||||| ||||| | ||||||||| |||| |||||||| |||||||    
T  8776977 tgtcggacacgacacgacacgtgtccgacaccgagacacacctaatccgaggagtgtccgtgctt 8776913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 3 - 62
Target Start/End: Complemental strand, 14611127 - 14611068
Alignment:
Q  3 aagctactaactctagtttacctatcaactaaccatagttgattattcatactctaataa 62  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  14611127 aagctactaactctaatttacctatcaactaaccatagttgattattcatactctaataa 14611068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 215 - 376
Target Start/End: Complemental strand, 16488690 - 16488524
Alignment:
Q  215 atggatacggacacggacaccgaaaacgacacggatacggacacgccgacacaactaannnnnnnagaaaatcacaaaatgcagtgtaattatatgtgtc 314  Q
    ||||| |||||||||||||||| |||||||| |||      |||||||||||| ||||       |||||||||||||||||||||||||||||||||||    
T  16488690 atggacacggacacggacaccggaaacgacatgga------cacgccgacacagctaatttttttagaaaatcacaaaatgcagtgtaattatatgtgtc 16488597  T
Q  315 ggtgtca-----------gacacgacacgtgtcggacacggggacacaccttatccaaggagtgttcgtgctt 376  Q
    ||||||            ||||||||||||||| | ||||||||||| ||||||||||||| |||||||||||    
T  16488596 ggtgtcgtgtcggtgtcggacacgacacgtgtctggcacggggacacgccttatccaaggaatgttcgtgctt 16488524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 15866625 - 15866564
Alignment:
Q  1 ccaagctactaactctagtttacctatcaactaaccatagttgattattcatactctaataa 62  Q
    |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  15866625 ccaagctattaactctagtttacctatcaactaactatagttgattattcatactctaataa 15866564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 240 - 376
Target Start/End: Original strand, 9658857 - 9658994
Alignment:
Q  240 acgacacggatacggacacgccgacacaactaannnnnnnagaaaatcacaaaatgcagtgtaattatatgtgtcggtgtcagacacgacacgtgtcgga 339  Q
    |||||||||| || |||||||||||||  ||||       ||||||||||| ||| |||||||||||||| ||||||||| |||||||||||||||| ||    
T  9658857 acgacacggacactgacacgccgacaccgctaataatttaagaaaatcacataattcagtgtaattatatttgtcggtgttagacacgacacgtgtctga 9658956  T
Q  340 cacggggacacacctta-tccaaggagtgttcgtgctt 376  Q
    ||| || |||| ||| | |||||||||||| |||||||    
T  9658957 caccggaacacgcctaattccaaggagtgtccgtgctt 9658994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 14620556 - 14620496
Alignment:
Q  1 ccaagctactaactctagtttacctatcaactaaccatagttgattattcatactctaata 61  Q
    |||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||    
T  14620556 ccaagctactaactgtagtttacctatcaactaatcatagttgattattcatactctaata 14620496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 15868437 - 15868377
Alignment:
Q  1 ccaagctactaactctagtttacctatcaactaaccatagttgattattcatactctaata 61  Q
    |||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  15868437 ccaagctattaactctagtttacctatcaactaactatagttgattattcatactctaata 15868377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 32079955 - 32079895
Alignment:
Q  1 ccaagctactaactctagtttacctatcaactaaccatagttgattattcatactctaata 61  Q
    ||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  32079955 ccaagcttctaactctagtttacctatcaactaactatagttgattattcatactctaata 32079895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 33866144 - 33866084
Alignment:
Q  1 ccaagctactaactctagtttacctatcaactaaccatagttgattattcatactctaata 61  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||    
T  33866144 ccaagctactaactctagtttacctatcaactaactatagttgattattaatactctaata 33866084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 282 - 376
Target Start/End: Original strand, 13789174 - 13789268
Alignment:
Q  282 aaaatcacaaaatgcagtgtaattatatgtgtcggtgtcagacacgacacgtgtcggacacggggacacaccttatccaaggagtgttcgtgctt 376  Q
    ||||||| |||||||||||||||||||||| ||  |||| |||| |||||||||| |||| ||||| || |||||| ||||||||||||||||||    
T  13789174 aaaatcataaaatgcagtgtaattatatgtatcaatgtcggacatgacacgtgtctgacatggggatacgccttattcaaggagtgttcgtgctt 13789268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 282 - 376
Target Start/End: Original strand, 13797793 - 13797887
Alignment:
Q  282 aaaatcacaaaatgcagtgtaattatatgtgtcggtgtcagacacgacacgtgtcggacacggggacacaccttatccaaggagtgttcgtgctt 376  Q
    ||||||| |||||||||||||||||||||| ||  |||| |||| |||||||||| |||| ||||| || |||||| ||||||||||||||||||    
T  13797793 aaaatcataaaatgcagtgtaattatatgtatcaatgtcggacatgacacgtgtctgacatggggatacgccttattcaaggagtgttcgtgctt 13797887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 282 - 376
Target Start/End: Original strand, 28152118 - 28152212
Alignment:
Q  282 aaaatcacaaaatgcagtgtaattatatgtgtcggtgtcagacacgacacgtgtcggacacggggacacaccttatccaaggagtgttcgtgctt 376  Q
    ||||||||| ||| ||||||||||| | ||||||||||| ||||||||||||||| ||||| ||||||  ||| |||| ||||||||||||||||    
T  28152118 aaaatcacataattcagtgtaattacaagtgtcggtgtcggacacgacacgtgtccgacaccgggacaggcctaatccgaggagtgttcgtgctt 28152212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 210 - 320
Target Start/End: Original strand, 16766645 - 16766755
Alignment:
Q  210 gaagaatggatacggacacggacaccgaaaacgacacggatacggacacgccgacacaactaannnnnnnagaaaatcacaaaatgcagtgtaattatat 309  Q
    |||| |||||||||||||||||||||| | |||||| ||| || |||||||||||||| ||||       | ||||||||| ||| ||||||||||| |     
T  16766645 gaagcatggatacggacacggacaccggacacgacatggacactgacacgccgacacagctaataatttgaaaaaatcacataattcagtgtaattacaa 16766744  T
Q  310 gtgtcggtgtc 320  Q
    |||||||||||    
T  16766745 gtgtcggtgtc 16766755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 316 - 368
Target Start/End: Original strand, 12696383 - 12696435
Alignment:
Q  316 gtgtcagacacgacacgtgtcggacacggggacacaccttatccaaggagtgt 368  Q
    ||||| ||||||||||||||| ||||| |||||||||||||||||||||||||    
T  12696383 gtgtcggacacgacacgtgtctgacaccgggacacaccttatccaaggagtgt 12696435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 240 - 368
Target Start/End: Original strand, 16833286 - 16833414
Alignment:
Q  240 acgacacggatacggacacgccgacacaactaannnnnnnagaaaatcacaaaatgcagtgtaattatatgtgtcggtgtcagacacgacacgtgtcgga 339  Q
    ||||||| || || |||||||||||||||||||       | ||||||||| | | ||||||||||| | |||||||||| |||||||||||| ||| ||    
T  16833286 acgacacagacactgacacgccgacacaactaataatttgaaaaaatcacatacttcagtgtaattacaagtgtcggtgttagacacgacacgcgtccga 16833385  T
Q  340 cacggggacacaccttatccaaggagtgt 368  Q
    |||  |||||||||  |||| ||||||||    
T  16833386 caccaggacacaccgaatccgaggagtgt 16833414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 297 - 376
Target Start/End: Complemental strand, 32978923 - 32978844
Alignment:
Q  297 agtgtaattatatgtgtcggtgtcagacacgacacgtgtcggacacggggacacaccttatccaaggagtgttcgtgctt 376  Q
    |||||||||| | ||||||||||| |||||||||| |||| ||||| |||||||  || ||||||||||||| |||||||    
T  32978923 agtgtaattacaagtgtcggtgtcggacacgacacatgtccgacaccgggacacgtctaatccaaggagtgtccgtgctt 32978844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 221 - 368
Target Start/End: Complemental strand, 853959 - 853812
Alignment:
Q  221 acggacacggacaccgaaaacgacacggatacggacacgccgacacaactaannnnnnnagaaaatcacaaaatgcagtgtaattatatgtgtcggtgtc 320  Q
    ||||| |||||||||| | ||||||||||| | |||||||||||||||||||       | ||||||||| |||  |||| ||||| | |||||||||||    
T  853959 acggatacggacaccggacacgacacggatgctgacacgccgacacaactaataatttgaaaaaatcacataattaagtgcaattacaagtgtcggtgtc 853860  T
Q  321 agacacgacacgtgtcggacacggggacacaccttatccaaggagtgt 368  Q
     || |||||| ||||| ||||  | ||||| ||| |||||| ||||||    
T  853859 ggatacgacatgtgtccgacatagagacacgcctaatccaatgagtgt 853812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 282 - 376
Target Start/End: Complemental strand, 33001328 - 33001234
Alignment:
Q  282 aaaatcacaaaatgcagtgtaattatatgtgtcggtgtcagacacgacacgtgtcggacacggggacacaccttatccaaggagtgttcgtgctt 376  Q
    ||||||||| |||  | |||||||||||||||||||||| ||||||||||||||| ||||| |  | || ||| |||||| ||||||| ||||||    
T  33001328 aaaatcacataattaaatgtaattatatgtgtcggtgtcggacacgacacgtgtctgacaccgaaatacgcctaatccaaagagtgtttgtgctt 33001234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 218 - 320
Target Start/End: Original strand, 9027134 - 9027236
Alignment:
Q  218 gatacggacacggacaccgaaaacgacacggatacggacacgccgacacaactaannnnnnnagaaaatcacaaaatgcagtgtaattatatgtgtcggt 317  Q
    ||||||||||||||| ||| | |||||||||| || |||||||||||||  ||||       ||| ||||||| ||| | ||||||||||||||||||||    
T  9027134 gatacggacacggactccggacacgacacggacactgacacgccgacaccgctaataatttgagataatcacataattccgtgtaattatatgtgtcggt 9027233  T
Q  318 gtc 320  Q
    |||    
T  9027234 gtc 9027236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 281 - 333
Target Start/End: Original strand, 7740660 - 7740712
Alignment:
Q  281 gaaaatcacaaaatgcagtgtaattatatgtgtcggtgtcagacacgacacgt 333  Q
    ||||||||||||||  |||||||||||||||||| ||||| ||||||||||||    
T  7740660 gaaaatcacaaaattgagtgtaattatatgtgtcagtgtcggacacgacacgt 7740712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 217 - 326
Target Start/End: Original strand, 7938071 - 7938180
Alignment:
Q  217 ggatacggacacggacaccgaaaacgacacggatacggacacgccgacacaactaannnnnnnagaaaatcacaaaatgcagtgtaattatatgtgtcgg 316  Q
    |||||||||||||||||||| | |||||| ||| || |||||||||||||| ||||       | ||||||| | |||  |||||||||||| |||||||    
T  7938071 ggatacggacacggacaccggacacgacatggacactgacacgccgacacagctaataatttgaaaaaatcatataatttagtgtaattataagtgtcgg 7938170  T
Q  317 tgtcagacac 326  Q
    |||| |||||    
T  7938171 tgtccgacac 7938180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 280 - 376
Target Start/End: Complemental strand, 13360413 - 13360318
Alignment:
Q  280 agaaaatcacaaaatgcagtgtaattatatgtgtcggtgtcagacacgacacgtgtcggacacggggacacaccttatccaaggagtgttcgtgctt 376  Q
    ||||||||||| ||| |||||||||||||||| |||||||||||||| |||  |||| ||||| | ||||| ||| |||| | |||||| |||||||    
T  13360413 agaaaatcacataattcagtgtaattatatgtttcggtgtcagacacaaca-atgtccgacactgagacacgcctaatccgaagagtgtccgtgctt 13360318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 280 - 376
Target Start/End: Complemental strand, 7996419 - 7996327
Alignment:
Q  280 agaaaatcacaaaatgcagtgtaattatatgtgtcggtgtcagacacgacacgtgtcggacacggggacacaccttatccaaggagtgttcgtgctt 376  Q
    ||||||||| | ||| ||||||||||||||| |||||||||     |||||||||||  |||||||||||| ||| ||||||||||| | |||||||    
T  7996419 agaaaatcatataattcagtgtaattatatgcgtcggtgtcg----cgacacgtgtctaacacggggacacgcctaatccaaggagtctccgtgctt 7996327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 280 - 376
Target Start/End: Original strand, 8022382 - 8022474
Alignment:
Q  280 agaaaatcacaaaatgcagtgtaattatatgtgtcggtgtcagacacgacacgtgtcggacacggggacacaccttatccaaggagtgttcgtgctt 376  Q
    ||||||||| | ||| ||||||||||||||| |||||||||     |||||||||||  |||||||||||| ||| ||||||||||| | |||||||    
T  8022382 agaaaatcatataattcagtgtaattatatgcgtcggtgtcg----cgacacgtgtctaacacggggacacgcctaatccaaggagtctccgtgctt 8022474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 257 - 376
Target Start/End: Complemental strand, 17327719 - 17327595
Alignment:
Q  257 acgccgacacaactaannnnnnnagaaaatcacaaaatgcagtgtaattatatgtgtcggtgtca-----gacacgacacgtgtcggacacggggacaca 351  Q
    ||||||||||||||||       ||||||||||| |||  ||||||| |||||||||| |||||      ||||||||||||||| ||||| |||||||     
T  17327719 acgccgacacaactaagattttgagaaaatcacataatttagtgtaactatatgtgtcagtgtcgtgtcggacacgacacgtgtctgacacagggacacg 17327620  T
Q  352 ccttatccaaggagtgttcgtgctt 376  Q
    ||| |||| |||||||| |||||||    
T  17327619 cctaatccgaggagtgtccgtgctt 17327595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 280 - 331
Target Start/End: Original strand, 19040370 - 19040421
Alignment:
Q  280 agaaaatcacaaaatgcagtgtaattatatgtgtcggtgtcagacacgacac 331  Q
    ||||||||||| ||| ||||||||||||||||||| ||||| ||||||||||    
T  19040370 agaaaatcacataattcagtgtaattatatgtgtctgtgtcggacacgacac 19040421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 5376922 - 5376876
Alignment:
Q  1 ccaagctactaactctagtttacctatcaactaaccatagttgatta 47  Q
    |||| |||||||||||||||||| ||||||||||| |||||||||||    
T  5376922 ccaaactactaactctagtttacttatcaactaactatagttgatta 5376876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 5378777 - 5378731
Alignment:
Q  1 ccaagctactaactctagtttacctatcaactaaccatagttgatta 47  Q
    |||| |||||||||||||||||| ||||||||||| |||||||||||    
T  5378777 ccaaactactaactctagtttacttatcaactaactatagttgatta 5378731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 280 - 326
Target Start/End: Complemental strand, 7265634 - 7265588
Alignment:
Q  280 agaaaatcacaaaatgcagtgtaattatatgtgtcggtgtcagacac 326  Q
    ||||||||||| ||| ||||||||||||||||||||||||| |||||    
T  7265634 agaaaatcacataattcagtgtaattatatgtgtcggtgtcggacac 7265588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 280 - 330
Target Start/End: Original strand, 7377997 - 7378047
Alignment:
Q  280 agaaaatcacaaaatgcagtgtaattatatgtgtcggtgtcagacacgaca 330  Q
    ||||||||||| ||| || |||||||||||||||||||||| |||||||||    
T  7377997 agaaaatcacataattcaatgtaattatatgtgtcggtgtcggacacgaca 7378047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 230 - 321
Target Start/End: Original strand, 19044432 - 19044523
Alignment:
Q  230 gacaccgaaaacgacacggatacggacacgccgacacaactaannnnnnnagaaaatcacaaaatgcagtgtaattatatgtgtcggtgtca 321  Q
    ||||||||| |||||| ||| || ||||||||||||| |||||       |||| |||||| ||| |||||| |||||||||||||||||||    
T  19044432 gacaccgaatacgacatggacactgacacgccgacacgactaataatttgagaatatcacataattcagtgttattatatgtgtcggtgtca 19044523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 282 - 376
Target Start/End: Original strand, 28715315 - 28715409
Alignment:
Q  282 aaaatcacaaaatgcagtgtaattatatgtgtcggtgtcagacacgacacgtgtcggacacggggacacaccttatccaaggagtgttcgtgctt 376  Q
    ||||| ||| ||| ||||||||||| | ||||||||||| ||||||||||||||  ||||| ||||||| ||| || | || ||||| |||||||    
T  28715315 aaaatgacataattcagtgtaattacaagtgtcggtgtcggacacgacacgtgttcgacaccgggacacgcctaattcgagaagtgtacgtgctt 28715409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 299 - 336
Target Start/End: Original strand, 30851637 - 30851674
Alignment:
Q  299 tgtaattatatgtgtcggtgtcagacacgacacgtgtc 336  Q
    |||||||||||||||||||||| |||||||||||||||    
T  30851637 tgtaattatatgtgtcggtgtcggacacgacacgtgtc 30851674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 254 - 331
Target Start/End: Complemental strand, 5626763 - 5626686
Alignment:
Q  254 gacacgccgacacaactaannnnnnnagaaaatcacaaaatgcagtgtaattatatgtgtcggtgtcagacacgacac 331  Q
    |||||||||||||||||||       ||||||||||  | | |||||||| |||||||||||||||| ||||||||||    
T  5626763 gacacgccgacacaactaatttttttagaaaatcacttagttcagtgtaaatatatgtgtcggtgtcggacacgacac 5626686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 280 - 320
Target Start/End: Complemental strand, 9025535 - 9025495
Alignment:
Q  280 agaaaatcacaaaatgcagtgtaattatatgtgtcggtgtc 320  Q
    ||||||||||| ||| |||||||||||||||||||||||||    
T  9025535 agaaaatcacataattcagtgtaattatatgtgtcggtgtc 9025495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 282 - 342
Target Start/End: Original strand, 24645501 - 24645561
Alignment:
Q  282 aaaatcacaaaatgcagtgtaattatatgtgtcggtgtcagacacgacacgtgtcggacac 342  Q
    ||||||||| ||| |||| || ||| | ||||||||||||||||||||||||||| |||||    
T  24645501 aaaatcacataattcagtatagttacaagtgtcggtgtcagacacgacacgtgtccgacac 24645561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #40
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 3 - 45
Target Start/End: Original strand, 1088841 - 1088883
Alignment:
Q  3 aagctactaactctagtttacctatcaactaaccatagttgat 45  Q
    ||||||||||||||| ||||| ||||||||||| |||||||||    
T  1088841 aagctactaactctaatttacttatcaactaactatagttgat 1088883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #41
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 282 - 320
Target Start/End: Original strand, 7027262 - 7027300
Alignment:
Q  282 aaaatcacaaaatgcagtgtaattatatgtgtcggtgtc 320  Q
    ||||||||| ||| |||||||||||||||||||||||||    
T  7027262 aaaatcacataattcagtgtaattatatgtgtcggtgtc 7027300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #42
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 310 - 376
Target Start/End: Complemental strand, 8365519 - 8365453
Alignment:
Q  310 gtgtcggtgtcagacacgacacgtgtcggacacggggacacaccttatccaaggagtgttcgtgctt 376  Q
    |||||||| || ||||||||||||||| ||||| ||||||| ||| |||| |||||| | |||||||    
T  8365519 gtgtcggtatcggacacgacacgtgtccgacactgggacacgcctaatccgaggagtctccgtgctt 8365453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #43
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 310 - 376
Target Start/End: Complemental strand, 10339125 - 10339059
Alignment:
Q  310 gtgtcggtgtcagacacgacacgtgtcggacacggggacacaccttatccaaggagtgttcgtgctt 376  Q
    ||||||||||| |||||||||| |||| ||||| ||||||| ||| |||  |||||||| |||||||    
T  10339125 gtgtcggtgtcggacacgacacatgtccgacactgggacacgcctaatcggaggagtgtccgtgctt 10339059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #44
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 15149231 - 15149277
Alignment:
Q  1 ccaagctactaactctagtttacctatcaactaaccatagttgatta 47  Q
    |||||||||| || ||||||||| ||||||||||| |||||||||||    
T  15149231 ccaagctactgaccctagtttacttatcaactaactatagttgatta 15149277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #45
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 19645486 - 19645532
Alignment:
Q  1 ccaagctactaactctagtttacctatcaactaaccatagttgatta 47  Q
    |||||||||||||| |||||||| ||||||||||| ||| |||||||    
T  19645486 ccaagctactaactttagtttacttatcaactaactataattgatta 19645532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #46
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 322 - 376
Target Start/End: Original strand, 31384990 - 31385044
Alignment:
Q  322 gacacgacacgtgtcggacacggggacacaccttatccaaggagtgttcgtgctt 376  Q
    |||||||||||||||  |||| ||||||| ||| ||||||||||||| |||||||    
T  31384990 gacacgacacgtgtcctacaccgggacacgcctaatccaaggagtgtccgtgctt 31385044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #47
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 210 - 267
Target Start/End: Complemental strand, 426625 - 426568
Alignment:
Q  210 gaagaatggatacggacacggacaccgaaaacgacacggatacggacacgccgacaca 267  Q
    |||| |||||||| |||||||| |||| | |||||||||| || ||||||||||||||    
T  426625 gaagcatggatacagacacggataccggacacgacacggacactgacacgccgacaca 426568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #48
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 280 - 336
Target Start/End: Complemental strand, 31579266 - 31579212
Alignment:
Q  280 agaaaatcacaaaatgcagtgtaattatatgtgtcggtgtcagacacgacacgtgtc 336  Q
    ||||||||||| ||| ||||||||||||  ||||||||||| |||||||||| ||||    
T  31579266 agaaaatcacataattcagtgtaattat--gtgtcggtgtcggacacgacacatgtc 31579212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #49
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 280 - 320
Target Start/End: Original strand, 9617452 - 9617492
Alignment:
Q  280 agaaaatcacaaaatgcagtgtaattatatgtgtcggtgtc 320  Q
    ||||||||||| ||| || ||||||||||||||||||||||    
T  9617452 agaaaatcacataattcaatgtaattatatgtgtcggtgtc 9617492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #50
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 280 - 320
Target Start/End: Original strand, 9629401 - 9629441
Alignment:
Q  280 agaaaatcacaaaatgcagtgtaattatatgtgtcggtgtc 320  Q
    ||||||||||| ||| || ||||||||||||||||||||||    
T  9629401 agaaaatcacataattcaatgtaattatatgtgtcggtgtc 9629441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #51
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 280 - 320
Target Start/End: Original strand, 26562707 - 26562747
Alignment:
Q  280 agaaaatcacaaaatgcagtgtaattatatgtgtcggtgtc 320  Q
    ||||||||||| ||| |||||||||||||||||||| ||||    
T  26562707 agaaaatcacataattcagtgtaattatatgtgtcgatgtc 26562747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #52
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 3 - 47
Target Start/End: Original strand, 28884443 - 28884487
Alignment:
Q  3 aagctactaactctagtttacctatcaactaaccatagttgatta 47  Q
    ||||| |||||||||||| |||||||||||||| |||| ||||||    
T  28884443 aagcttctaactctagttaacctatcaactaactatagctgatta 28884487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0652 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: scaffold0652
Description:

Target: scaffold0652; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 217 - 376
Target Start/End: Complemental strand, 566 - 407
Alignment:
Q  217 ggatacggacacggacaccgaaaacgacacggatacggacacgccgacacaactaannnnnnnagaaaatcacaaaatgcagtgtaattatatgtgtcgg 316  Q
    |||||||||||||||||||||| ||| |||||| || || ||||||||||  ||||       | ||||||||||||| ||||||||||| | |||||||    
T  566 ggatacggacacggacaccgaacacgccacggacactgatacgccgacactgctaataatttgaaaaaatcacaaaattcagtgtaattacaagtgtcgg 467  T
Q  317 tgtcagacacgacacgtgtcggacacggggacacaccttatccaaggagtgttcgtgctt 376  Q
    |||| |||||||| |||||| ||||| ||||||||||| |||| |||||||| |||||||    
T  466 tgtcggacacgacgcgtgtccgacaccgggacacacctaatccgaggagtgtccgtgctt 407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 64; Significance: 9e-28; HSPs: 38)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 217 - 376
Target Start/End: Original strand, 6401453 - 6401623
Alignment:
Q  217 ggatacggacacggacaccgaaaacgacacggatacggacacgccgacacaactaannnnnnnagaaaatcacaaaatgcagtgtaattatatgtgtcg- 315  Q
    |||||| ||||||||||||| |  ||||||||| || |||||||||||||||||||       ||||||||||||||| ||||||||||||||||||||     
T  6401453 ggatacagacacggacaccggacgcgacacggacaccgacacgccgacacaactaaattttttagaaaatcacaaaatacagtgtaattatatgtgtcgg 6401552  T
Q  316 ----------gtgtcagacacgacacgtgtcggacacggggacacaccttatccaaggagtgttcgtgctt 376  Q
              ||||| ||||||||||||||| |||||||||| || ||||||||||||||||| |||||||    
T  6401553 tgtcgtgtcagtgtcggacacgacacgtgtctgacacggggatacgccttatccaaggagtgtccgtgctt 6401623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 298 - 376
Target Start/End: Complemental strand, 30099061 - 30098983
Alignment:
Q  298 gtgtaattatatgtgtcggtgtcagacacgacacgtgtcggacacggggacacaccttatccaaggagtgttcgtgctt 376  Q
    ||||||||||||||||||||||| || |||||||||||| ||||||||||||| |||||||||||||||||||||||||    
T  30099061 gtgtaattatatgtgtcggtgtcggatacgacacgtgtctgacacggggacacgccttatccaaggagtgttcgtgctt 30098983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 39787245 - 39787306
Alignment:
Q  1 ccaagctactaactctagtttacctatcaactaaccatagttgattattcatactctaataa 62  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  39787245 ccaagctactaactctagtttacctatcaactaactatagttgattattcatactctaataa 39787306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 215 - 376
Target Start/End: Original strand, 21814220 - 21814386
Alignment:
Q  215 atggatacggacacggacaccgaaaacgacacggatacggacacgccgacacaactaannnnnnnagaaaatcacaaaatgcagtgtaattatatgtgt- 313  Q
    ||||| |||||||||||||||| |||||||| |||      |||||||||||| ||||       ||||||||||||||||||||||||||||||||||     
T  21814220 atggacacggacacggacaccggaaacgacatgga------cacgccgacacagctaatttttttagaaaatcacaaaatgcagtgtaattatatgtgtc 21814313  T
Q  314 ----------cggtgtcagacacgacacgtgtcggacacggggacacaccttatccaaggagtgttcgtgctt 376  Q
              ||||||| ||||||||||||||| | ||||||||||| ||||||||||||| |||||||||||    
T  21814314 ggtgtcgtgtcggtgtcggacacgacacgtgtctggcacggggacacgccttatccaaggaatgttcgtgctt 21814386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 219 - 376
Target Start/End: Complemental strand, 21191158 - 21191001
Alignment:
Q  219 atacggacacggacaccgaaaacgacacggatacggacacgccgacacaactaannnnnnnagaaaatcacaaaatgcagtgtaattatatgtgtcggtg 318  Q
    |||||||||| ||||||| | |||||||||| || |||| ||||||||| ||||       | ||||||||| ||| ||||||||||| | |||||||||    
T  21191158 atacggacactgacaccggacacgacacggacactgacatgccgacacagctaataatttgaaaaaatcacataattcagtgtaattacaagtgtcggtg 21191059  T
Q  319 tcagacacgacacgtgtcggacacggggacacaccttatccaaggagtgttcgtgctt 376  Q
    || ||||| ||||||||| ||| | ||||||| ||| |||| |||||||| |||||||    
T  21191058 tcggacacaacacgtgtccgactccgggacacgcctaatccgaggagtgtccgtgctt 21191001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 280 - 376
Target Start/End: Complemental strand, 30502429 - 30502333
Alignment:
Q  280 agaaaatcacaaaatgcagtgtaattatatgtgtcggtgtcagacacgacacgtgtcggacacggggacacaccttatccaaggagtgttcgtgctt 376  Q
    ||||||||||  ||| ||||||||||||||||||||||||| |||||||||| |||| ||||| ||||||  ||| ||||||||| |||||||||||    
T  30502429 agaaaatcacttaattcagtgtaattatatgtgtcggtgtcggacacgacacatgtccgacactgggacatgcctaatccaaggattgttcgtgctt 30502333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 280 - 376
Target Start/End: Complemental strand, 30542772 - 30542676
Alignment:
Q  280 agaaaatcacaaaatgcagtgtaattatatgtgtcggtgtcagacacgacacgtgtcggacacggggacacaccttatccaaggagtgttcgtgctt 376  Q
    ||||||||||  ||| ||||||||||||||||||||||||| |||||||||| |||| ||||| ||||||  ||| ||||||||| |||||||||||    
T  30542772 agaaaatcacttaattcagtgtaattatatgtgtcggtgtcggacacgacacatgtccgacactgggacatgcctaatccaaggattgttcgtgctt 30542676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 282 - 376
Target Start/End: Complemental strand, 21576784 - 21576690
Alignment:
Q  282 aaaatcacaaaatgcagtgtaattatatgtgtcggtgtcagacacgacacgtgtcggacacggggacacaccttatccaaggagtgttcgtgctt 376  Q
    ||||||||| ||| ||||||||||| | |||||| |||| ||||||||||||||| ||||| ||||||| ||| |||| |||||||| |||||||    
T  21576784 aaaatcacataattcagtgtaattacaagtgtcgatgtcggacacgacacgtgtctgacactgggacacgcctaatccgaggagtgtccgtgctt 21576690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 254 - 374
Target Start/End: Original strand, 42029744 - 42029864
Alignment:
Q  254 gacacgccgacacaactaannnnnnnagaaaatcacaaaatgcagtgtaattatatgtgtcggtgtcagacacgacacgtgtcggacacggggacacacc 353  Q
    ||||||||||||||| |||       ||||||||||| ||| || ||||||||||||| |||||||| |||||||||| |||| | ||||  ||||| ||    
T  42029744 gacacgccgacacaattaaaaaatttagaaaatcacataattcaatgtaattatatgtatcggtgtcggacacgacacatgtctgtcacgtagacacgcc 42029843  T
Q  354 ttatccaaggagtgttcgtgc 374  Q
    |||||| |||||||| |||||    
T  42029844 ttatccgaggagtgtccgtgc 42029864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 296 - 377
Target Start/End: Original strand, 26312803 - 26312884
Alignment:
Q  296 cagtgtaattatatgtgtcggtgtcagacacgacacgtgtcggacacggggacacaccttatccaaggagtgttcgtgctta 377  Q
    |||||||||||||||| |||||||| ||||||| ||||||| |||||  |||||||||| |||| ||||||||  |||||||    
T  26312803 cagtgtaattatatgtatcggtgtcggacacgatacgtgtctgacaccaggacacacctaatccgaggagtgtatgtgctta 26312884  T

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Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 282 - 376
Target Start/End: Original strand, 43564901 - 43564995
Alignment:
Q  282 aaaatcacaaaatgcagtgtaattatatgtgtcggtgtcagacacgacacgtgtcggacacggggacacaccttatccaaggagtgttcgtgctt 376  Q
    ||||||||| |||  |||||||||||| ||||||||||| ||||||||| ||||| ||| | ||||||| ||| |||| || ||||| |||||||    
T  43564901 aaaatcacataatttagtgtaattataagtgtcggtgtcggacacgacatgtgtccgacgccgggacacgcctaatccgagaagtgtccgtgctt 43564995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 280 - 336
Target Start/End: Complemental strand, 18421882 - 18421826
Alignment:
Q  280 agaaaatcacaaaatgcagtgtaattatatgtgtcggtgtcagacacgacacgtgtc 336  Q
    ||||||||||| ||| ||||||||||||||||||||| ||| |||||||||| ||||    
T  18421882 agaaaatcacataatccagtgtaattatatgtgtcggcgtcggacacgacacatgtc 18421826  T

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Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 282 - 342
Target Start/End: Original strand, 42893380 - 42893440
Alignment:
Q  282 aaaatcacaaaatgcagtgtaattatatgtgtcggtgtcagacacgacacgtgtcggacac 342  Q
    ||||||||| ||| ||||||||||| | ||||||||||||||||| ||||||||| |||||    
T  42893380 aaaatcacataatccagtgtaattacaagtgtcggtgtcagacacaacacgtgtccgacac 42893440  T

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Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 217 - 336
Target Start/End: Original strand, 6770498 - 6770615
Alignment:
Q  217 ggatacggacacggacaccgaaaacgacacggatacggacacgccgacacaactaannnnnnnagaaaatcacaaaatgcagtgtaattatatgtgtcgg 316  Q
    ||||||||| |||||||||||| | |||||||| || ||||| | |||||||||||       ||||||||||| ||| ||||||| |  |||||||| |    
T  6770498 ggatacggatacggacaccgaacatgacacggacactgacacactgacacaactaataatttaagaaaatcacataattcagtgtact--tatgtgtcag 6770595  T
Q  317 tgtcagacacgacacgtgtc 336  Q
    |||| |||||||||| ||||    
T  6770596 tgtcggacacgacacatgtc 6770615  T

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Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 280 - 331
Target Start/End: Complemental strand, 28588715 - 28588664
Alignment:
Q  280 agaaaatcacaaaatgcagtgtaattatatgtgtcggtgtcagacacgacac 331  Q
    ||||||||||| ||| ||||||||||||| ||||||||||| ||||||||||    
T  28588715 agaaaatcacataattcagtgtaattataggtgtcggtgtcggacacgacac 28588664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 9 - 55
Target Start/End: Original strand, 25076310 - 25076356
Alignment:
Q  9 ctaactctagtttacctatcaactaaccatagttgattattcatact 55  Q
    |||| ||||||| |||||||||||||| |||||||||||||||||||    
T  25076310 ctaattctagttaacctatcaactaactatagttgattattcatact 25076356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 9 - 55
Target Start/End: Original strand, 25134279 - 25134325
Alignment:
Q  9 ctaactctagtttacctatcaactaaccatagttgattattcatact 55  Q
    |||| ||||||| |||||||||||||| |||||||||||||||||||    
T  25134279 ctaattctagttaacctatcaactaactatagttgattattcatact 25134325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 221 - 320
Target Start/End: Complemental strand, 37328944 - 37328845
Alignment:
Q  221 acggacacggacaccgaaaacgacacggatacggacacgccgacacaactaannnnnnnagaaaatcacaaaatgcagtgtaattatatgtgtcggtgtc 320  Q
    |||||||||||||||||| |||||||||| || || || |||||||| | ||         ||||||||||||| ||||||||||| |||||||||||||    
T  37328944 acggacacggacaccgaacacgacacggacactgatacaccgacacagcaaataatttgtaaaaatcacaaaattcagtgtaattacatgtgtcggtgtc 37328845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 306 - 376
Target Start/End: Complemental strand, 39268613 - 39268543
Alignment:
Q  306 atatgtgtcggtgtcagacacgacacgtgtcggacacggggacacaccttatccaaggagtgttcgtgctt 376  Q
    ||||||||||||||  ||||||||| ||||| ||||| ||||||| ||| |||| |||||||| |||||||    
T  39268613 atatgtgtcggtgttggacacgacatgtgtccgacactgggacacgcctaatccgaggagtgtccgtgctt 39268543  T

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Target: chr5; HSP #20
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 221 - 266
Target Start/End: Original strand, 42469180 - 42469225
Alignment:
Q  221 acggacacggacaccgaaaacgacacggatacggacacgccgacac 266  Q
    |||||||||||||||||| ||||||||||||  |||||||||||||    
T  42469180 acggacacggacaccgaacacgacacggataatgacacgccgacac 42469225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 280 - 320
Target Start/End: Original strand, 3966521 - 3966561
Alignment:
Q  280 agaaaatcacaaaatgcagtgtaattatatgtgtcggtgtc 320  Q
    ||||||||||| ||| |||||||||||||||||||||||||    
T  3966521 agaaaatcacacaattcagtgtaattatatgtgtcggtgtc 3966561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 280 - 376
Target Start/End: Complemental strand, 21194164 - 21194068
Alignment:
Q  280 agaaaatcacaaaatgcagtgtaattatatgtgtcggtgtcagacacgacacgtgtcggacacggggacacaccttatccaaggagtgttcgtgctt 376  Q
    |||||||||||  || ||||||||||||| || | |||||  |||||||||| |||| ||||| ||| ||| ||| |||| |||||||| |||||||    
T  21194164 agaaaatcacatcattcagtgtaattataggtattggtgttggacacgacacatgtcagacaccggggcacgcctaatccgaggagtgtccgtgctt 21194068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 310 - 374
Target Start/End: Original strand, 21522809 - 21522873
Alignment:
Q  310 gtgtcggtgtcagacacgacacgtgtcggacacggggacacaccttatccaaggagtgttcgtgc 374  Q
    ||||||||||| ||||||||||||||| | ||| ||||||| ||| |||||| |||||| |||||    
T  21522809 gtgtcggtgtcggacacgacacgtgtccggcaccgggacacgcctaatccaaagagtgtccgtgc 21522873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 310 - 374
Target Start/End: Original strand, 21533375 - 21533439
Alignment:
Q  310 gtgtcggtgtcagacacgacacgtgtcggacacggggacacaccttatccaaggagtgttcgtgc 374  Q
    ||||||||||| ||||||||||||||| | ||| ||||||| ||| |||||| |||||| |||||    
T  21533375 gtgtcggtgtcggacacgacacgtgtccggcaccgggacacgcctaatccaaagagtgtccgtgc 21533439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 310 - 374
Target Start/End: Original strand, 21542089 - 21542153
Alignment:
Q  310 gtgtcggtgtcagacacgacacgtgtcggacacggggacacaccttatccaaggagtgttcgtgc 374  Q
    ||||||||||| ||||||||||||||| ||||| ||||||| ||  ||||||||| ||| |||||    
T  21542089 gtgtcggtgtcggacacgacacgtgtccgacaccgggacacgccgaatccaaggaatgtccgtgc 21542153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 280 - 376
Target Start/End: Original strand, 27932253 - 27932349
Alignment:
Q  280 agaaaatcacaaaatgcagtgtaattatatgtgtcggtgtcagacacgacacgtgtcggacacggggacacaccttatccaaggagtgttcgtgctt 376  Q
    ||||||| ||| ||| ||||||||||| |  | | |||||| |||||||||||||||||||||  |||||| ||| || | ||||||||| ||||||    
T  27932253 agaaaattacataattcagtgtaattacaaatcttggtgtcggacacgacacgtgtcggacaccaggacacgcctaattcgaggagtgtttgtgctt 27932349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 217 - 272
Target Start/End: Original strand, 15382432 - 15382487
Alignment:
Q  217 ggatacggacacggacaccgaaaacgacacggatacggacacgccgacacaactaa 272  Q
    |||||||||||||||||||| | |||||||||| |  |||||||||||||| ||||    
T  15382432 ggatacggacacggacaccggacacgacacggacaatgacacgccgacacagctaa 15382487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 217 - 272
Target Start/End: Original strand, 21522705 - 21522760
Alignment:
Q  217 ggatacggacacggacaccgaaaacgacacggatacggacacgccgacacaactaa 272  Q
    |||||||||||||| ||||| | |||||||||| || |||||||||||||| ||||    
T  21522705 ggatacggacacggtcaccggacacgacacggacactgacacgccgacacagctaa 21522760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 217 - 272
Target Start/End: Original strand, 21533271 - 21533326
Alignment:
Q  217 ggatacggacacggacaccgaaaacgacacggatacggacacgccgacacaactaa 272  Q
    |||||||||||||| ||||| | |||||||||| || |||||||||||||| ||||    
T  21533271 ggatacggacacggtcaccggacacgacacggacactgacacgccgacacagctaa 21533326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 217 - 272
Target Start/End: Original strand, 41995426 - 41995481
Alignment:
Q  217 ggatacggacacggacaccgaaaacgacacggatacggacacgccgacacaactaa 272  Q
    |||||||||||||||||| | | ||||||| || || |||||||||||||||||||    
T  41995426 ggatacggacacggacactggatacgacacagacactgacacgccgacacaactaa 41995481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 299 - 349
Target Start/End: Complemental strand, 23012430 - 23012380
Alignment:
Q  299 tgtaattatatgtgtcggtgtcagacacgacacgtgtcggacacggggaca 349  Q
    |||||||||||||||||||||  |||||||||| |||| ||||| ||||||    
T  23012430 tgtaattatatgtgtcggtgttggacacgacacatgtctgacaccgggaca 23012380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 282 - 331
Target Start/End: Original strand, 15884008 - 15884057
Alignment:
Q  282 aaaatcacaaaatgcagtgtaattatatgtgtcggtgtcagacacgacac 331  Q
    ||||||||| ||| ||||||||||| | ||||||||||| ||||||||||    
T  15884008 aaaatcacataattcagtgtaattacaagtgtcggtgtcggacacgacac 15884057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 299 - 368
Target Start/End: Complemental strand, 32630757 - 32630688
Alignment:
Q  299 tgtaattatatgtgtcggtgtcagacacgacacgtgtcggacacggggacacaccttatccaaggagtgt 368  Q
    |||||||||||||||| ||||| || |||||||||||| ||||  | ||||||||| || | ||||||||    
T  32630757 tgtaattatatgtgtcagtgtcggatacgacacgtgtccgacattgagacacacctaattcgaggagtgt 32630688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 280 - 317
Target Start/End: Original strand, 39758290 - 39758327
Alignment:
Q  280 agaaaatcacaaaatgcagtgtaattatatgtgtcggt 317  Q
    ||||||||||| ||| ||||||||||||||||||||||    
T  39758290 agaaaatcacataattcagtgtaattatatgtgtcggt 39758327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 280 - 320
Target Start/End: Complemental strand, 6471930 - 6471890
Alignment:
Q  280 agaaaatcacaaaatgcagtgtaattatatgtgtcggtgtc 320  Q
    ||||||||||| ||| |||||||||||||||||| ||||||    
T  6471930 agaaaatcacataattcagtgtaattatatgtgtgggtgtc 6471890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 280 - 376
Target Start/End: Original strand, 17123066 - 17123161
Alignment:
Q  280 agaaaatcacaaaatgcagtgtaattatatgtgtcggtgtcagacacgacacgtgtcggacacggggacacaccttatccaaggagtgttcgtgctt 376  Q
    ||||||||||| |||  |||  |||||||| |||||||||  ||||||| || |||| ||||| ||||||| ||| |||| |||||||| |||||||    
T  17123066 agaaaatcacataatcaagtacaattatatatgtcggtgttggacacgaaacatgtccgacac-gggacacgcctaatccgaggagtgtccgtgctt 17123161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 316 - 376
Target Start/End: Original strand, 30098391 - 30098451
Alignment:
Q  316 gtgtcagacacgacacgtgtcggacacggggacacaccttatccaaggagtgttcgtgctt 376  Q
    ||||| ||||||||||||||| |||||  |||||||||| |||| |||| ||| |||||||    
T  30098391 gtgtcggacacgacacgtgtcagacaccaggacacacctaatccgaggaatgtccgtgctt 30098451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #38
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 280 - 320
Target Start/End: Complemental strand, 41091298 - 41091258
Alignment:
Q  280 agaaaatcacaaaatgcagtgtaattatatgtgtcggtgtc 320  Q
    ||||||||||| ||| |||||||||||||||||||| ||||    
T  41091298 agaaaatcacataattcagtgtaattatatgtgtcgatgtc 41091258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 64; Significance: 9e-28; HSPs: 49)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 229 - 376
Target Start/End: Complemental strand, 5414264 - 5414106
Alignment:
Q  229 ggacaccgaaaacgacacggatacggacacgccgacacaactaannnnnnnagaaaatcacaaaatgcagtgtaattatat-----------gtgtcggt 317  Q
    |||||||| | |||||||||| ||||||||||||||||| ||||       ||||||||||||||||||||||||||||||           ||||| ||    
T  5414264 ggacaccggacacgacacggacacggacacgccgacacagctaatttttttagaaaatcacaaaatgcagtgtaattatatgtatcggtgtcgtgtcagt 5414165  T
Q  318 gtcagacacgacacgtgtcggacacggggacacaccttatccaaggagtgttcgtgctt 376  Q
    ||| ||||||||||||||| ||||| ||||||||||||||||||||||||| |||||||    
T  5414164 gtcggacacgacacgtgtctgacacagggacacaccttatccaaggagtgtccgtgctt 5414106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 218 - 376
Target Start/End: Complemental strand, 23293089 - 23292931
Alignment:
Q  218 gatacggacacggacaccgaaaacgacacggatacggacacgccgacacaactaannnnnnnagaaaatcacaaaatgcagtgtaattatatgtgtcggt 317  Q
    ||||||||||||||||||| | |||||||||| |  |||||||||||||| ||||       | ||||||||| ||| |||| |||||| | ||||||||    
T  23293089 gatacggacacggacaccggacacgacacggacaatgacacgccgacacagctaataatttgaaaaaatcacataattcagtataattacaagtgtcggt 23292990  T
Q  318 gtcagacacgacacgtgtcggacacggggacacaccttatccaaggagtgttcgtgctt 376  Q
    ||| ||||||||||||||| ||||| ||||||| ||| |||| |||||||| |||||||    
T  23292989 gtcggacacgacacgtgtccgacaccgggacacgcctaatccgaggagtgtccgtgctt 23292931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 23985819 - 23985758
Alignment:
Q  1 ccaagctactaactctagtttacctatcaactaaccatagttgattattcatactctaataa 62  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  23985819 ccaagctactaactctagtttacctatcaactaactatagttgattattcatactctaataa 23985758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 52545287 - 52545347
Alignment:
Q  1 ccaagctactaactctagtttacctatcaactaaccatagttgattattcatactctaata 61  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  52545287 ccaagctactaactctagtttacctatcaactaactatagttgattattcatactctaata 52545347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 3529333 - 3529393
Alignment:
Q  1 ccaagctactaactctagtttacctatcaactaaccatagttgattattcatactctaata 61  Q
    |||||||||||||| |||||||||||||||||||| | |||||||||||||||||||||||    
T  3529333 ccaagctactaactttagtttacctatcaactaactacagttgattattcatactctaata 3529393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 24807469 - 24807409
Alignment:
Q  1 ccaagctactaactctagtttacctatcaactaaccatagttgattattcatactctaata 61  Q
    ||||||| ||||||||| ||||||||||||||||| |||||||||||||||||||||||||    
T  24807469 ccaagcttctaactctaatttacctatcaactaactatagttgattattcatactctaata 24807409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 282 - 368
Target Start/End: Original strand, 49431046 - 49431132
Alignment:
Q  282 aaaatcacaaaatgcagtgtaattatatgtgtcggtgtcagacacgacacgtgtcggacacggggacacaccttatccaaggagtgt 368  Q
    ||||||||| ||| ||||||||||| | ||||||||||| |||||||||||||||  |||| ||||||| |||||||| ||||||||    
T  49431046 aaaatcacataattcagtgtaattaaaagtgtcggtgtcggacacgacacgtgtccaacaccgggacacgccttatccgaggagtgt 49431132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 218 - 376
Target Start/End: Complemental strand, 12895377 - 12895219
Alignment:
Q  218 gatacggacacggacaccgaaaacgacacggatacggacacgccgacacaactaannnnnnnagaaaatcacaaaatgcagtgtaattatatgtgtcggt 317  Q
    |||||||| |||||||||| | |||||||| | |  ||||||||||||||| |||       | ||||||||| |||   ||||||||||| ||||||||    
T  12895377 gatacggatacggacaccggatacgacacgaacaatgacacgccgacacaaataataatttgaaaaaatcacataattttgtgtaattataagtgtcggt 12895278  T
Q  318 gtcagacacgacacgtgtcggacacggggacacaccttatccaaggagtgttcgtgctt 376  Q
    ||| ||||||||| || || ||||  ||||||| ||| |||| ||||||||||||||||    
T  12895277 gtcggacacgacatgtatccgacatcgggacacgcctaatccgaggagtgttcgtgctt 12895219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 210 - 376
Target Start/End: Original strand, 36635272 - 36635444
Alignment:
Q  210 gaagaatggatacggacacggacaccgaaaacgacacggatacggacacgccgacacaactaannnnnnnagaaaatcacaaaatgcagtgtaattatat 309  Q
    |||| ||||||| |||||| ||||||| | ||||| |||| || |||||||| |||| |||||       ||||||||||| ||| ||||||||||||||    
T  36635272 gaagcatggataaggacacagacaccggacacgactcggacactgacacgccaacaccactaataatttgagaaaatcacataattcagtgtaattatat 36635371  T
Q  310 gtg-tcg-----gtgtcagacacgacacgtgtcggacacggggacacaccttatccaaggagtgttcgtgctt 376  Q
    ||| |||     ||||||||||||||||| ||| ||||| ||||||| ||| |||| | |||||| |||||||    
T  36635372 gtgttcgtgtgagtgtcagacacgacacgcgtcagacaccgggacacgcctaatccgaagagtgtccgtgctt 36635444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 310 - 376
Target Start/End: Complemental strand, 30982878 - 30982812
Alignment:
Q  310 gtgtcggtgtcagacacgacacgtgtcggacacggggacacaccttatccaaggagtgttcgtgctt 376  Q
    ||||||||||||||||||||||||||| ||||| ||||||| ||| |||||| |||||| |||||||    
T  30982878 gtgtcggtgtcagacacgacacgtgtccgacaccgggacacgcctaatccaaagagtgtccgtgctt 30982812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 217 - 336
Target Start/End: Complemental strand, 35158089 - 35157970
Alignment:
Q  217 ggatacggacacggacaccgaaaacgacacggatacggacacgccgacacaactaannnnnnnagaaaatcacaaaatgcagtgtaattatatgtgtcgg 316  Q
    |||||||||||||||||||| | || ||||||| || ||||||||||| |||||||         ||||||||| |||  |||||||||||| |||||||    
T  35158089 ggatacggacacggacaccggacacaacacggacactgacacgccgacgcaactaataatttggaaaaatcacataatttagtgtaattataagtgtcgg 35157990  T
Q  317 tgtcagacacgacacgtgtc 336  Q
    |||| |||||||||| ||||    
T  35157989 tgtctgacacgacacatgtc 35157970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 18395820 - 18395880
Alignment:
Q  1 ccaagctactaactctagtttacctatcaactaaccatagttgattattcatactctaata 61  Q
    |||| ||| ||||| |||||||||||||||||||| ||||||||||||||||||| |||||    
T  18395820 ccaacctattaactatagtttacctatcaactaactatagttgattattcatactataata 18395880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 10 - 61
Target Start/End: Complemental strand, 18320114 - 18320063
Alignment:
Q  10 taactctagtttacctatcaactaaccatagttgattattcatactctaata 61  Q
    ||||||||||||||||||||| |||| ||||||||||||||||||| |||||    
T  18320114 taactctagtttacctatcaattaactatagttgattattcatactgtaata 18320063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 10 - 61
Target Start/End: Original strand, 18398569 - 18398620
Alignment:
Q  10 taactctagtttacctatcaactaaccatagttgattattcatactctaata 61  Q
    ||||||||||||||||||||| |||| ||||||||||||||||||| |||||    
T  18398569 taactctagtttacctatcaattaactatagttgattattcatactgtaata 18398620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 7040406 - 7040360
Alignment:
Q  1 ccaagctactaactctagtttacctatcaactaaccatagttgatta 47  Q
    ||||||||||||||||||||||| ||||||||||| |||||||||||    
T  7040406 ccaagctactaactctagtttacttatcaactaactatagttgatta 7040360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 280 - 354
Target Start/End: Original strand, 9996858 - 9996932
Alignment:
Q  280 agaaaatcacaaaatgcagtgtaattatatgtgtcggtgtcagacacgacacgtgtcggacacggggacacacct 354  Q
    ||||||||||| ||| |||| ||||||||||| |||||||||||||  ||||||||| ||||| || ||||||||    
T  9996858 agaaaatcacataattcagtataattatatgtctcggtgtcagacataacacgtgtccgacactggaacacacct 9996932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 322 - 376
Target Start/End: Original strand, 19482739 - 19482793
Alignment:
Q  322 gacacgacacgtgtcggacacggggacacaccttatccaaggagtgttcgtgctt 376  Q
    ||||||||||||||| ||||| ||||||||||| |||| ||||||||||||||||    
T  19482739 gacacgacacgtgtccgacactgggacacacctaatccgaggagtgttcgtgctt 19482793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 23564861 - 23564907
Alignment:
Q  1 ccaagctactaactctagtttacctatcaactaaccatagttgatta 47  Q
    ||||||||||||||||||||||| ||||||||||| |||||||||||    
T  23564861 ccaagctactaactctagtttacttatcaactaactatagttgatta 23564907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 282 - 376
Target Start/End: Complemental strand, 34306843 - 34306749
Alignment:
Q  282 aaaatcacaaaatgcagtgtaattatatgtgtcggtgtcagacacgacacgtgtcggacacggggacacaccttatccaaggagtgttcgtgctt 376  Q
    ||||||| | |||| |||||||||| | ||||||||||| ||||||||||||||| ||||| | ||||| ||| |||  |||| |||||||||||    
T  34306843 aaaatcagataatgtagtgtaattacaagtgtcggtgtcggacacgacacgtgtccgacaccgagacacgcctaatctgaggaatgttcgtgctt 34306749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 282 - 336
Target Start/End: Complemental strand, 54580062 - 54580008
Alignment:
Q  282 aaaatcacaaaatgcagtgtaattatatgtgtcggtgtcagacacgacacgtgtc 336  Q
    ||||||||| ||| ||||||||||||| ||||||||||| |||||||||||||||    
T  54580062 aaaatcacataattcagtgtaattataagtgtcggtgtcggacacgacacgtgtc 54580008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 3 - 47
Target Start/End: Complemental strand, 18656151 - 18656107
Alignment:
Q  3 aagctactaactctagtttacctatcaactaaccatagttgatta 47  Q
    |||||||||||||||||||| |||||||||||| |||||||||||    
T  18656151 aagctactaactctagtttagctatcaactaactatagttgatta 18656107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 280 - 356
Target Start/End: Complemental strand, 19097935 - 19097859
Alignment:
Q  280 agaaaatcacaaaatgcagtgtaattatatgtgtcggtgtcagacacgacacgtgtcggacacggggacacacctta 356  Q
    ||||||||||  ||| |||| ||||||||| ||||||||||  ||| |||||||||| ||||||||||||| |||||    
T  19097935 agaaaatcacgtaattcagtataattatatttgtcggtgtcgaacatgacacgtgtctgacacggggacacgcctta 19097859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 280 - 376
Target Start/End: Original strand, 35161054 - 35161150
Alignment:
Q  280 agaaaatcacaaaatgcagtgtaattatatgtgtcggtgtcagacacgacacgtgtcggacacggggacacaccttatccaaggagtgttcgtgctt 376  Q
    ||||||||||| ||| ||||||||||||| || || | ||| ||||||||||||||| ||||| || |||||||| |||| |  ||||| |||||||    
T  35161054 agaaaatcacataattcagtgtaattataagtatcagagtcggacacgacacgtgtccgacaccggaacacacctaatccgaaaagtgtccgtgctt 35161150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 315 - 373
Target Start/End: Original strand, 848015 - 848073
Alignment:
Q  315 ggtgtcagacacgacacgtgtcggacacggggacacaccttatccaaggagtgttcgtg 373  Q
    |||||| ||||||| |||||||| |||| ||||||||||| ||||||||||||| ||||    
T  848015 ggtgtcggacacgaaacgtgtcgaacaccgggacacacctaatccaaggagtgtccgtg 848073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 280 - 342
Target Start/End: Complemental strand, 8402783 - 8402721
Alignment:
Q  280 agaaaatcacaaaatgcagtgtaattatatgtgtcggtgtcagacacgacacgtgtcggacac 342  Q
    ||||||||| | ||| |||||||||||||||| || |||||||||||||||| |||| |||||    
T  8402783 agaaaatcatataattcagtgtaattatatgtctcagtgtcagacacgacacttgtccgacac 8402721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 280 - 350
Target Start/End: Complemental strand, 8423759 - 8423689
Alignment:
Q  280 agaaaatcacaaaatgcagtgtaattatatgtgtcggtgtcagacacgacacgtgtcggacacggggacac 350  Q
    ||||||||||| ||| |||||||||||||  |||||||||| |||||||||  |||| ||||| |||||||    
T  8423759 agaaaatcacataattcagtgtaattataaatgtcggtgtcggacacgacagctgtccgacaccgggacac 8423689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 310 - 376
Target Start/End: Original strand, 12323968 - 12324034
Alignment:
Q  310 gtgtcggtgtcagacacgacacgtgtcggacacggggacacaccttatccaaggagtgttcgtgctt 376  Q
    ||||||||||| |||| |||||||||  | |||||| ||||||||||||| |||||||| |||||||    
T  12323968 gtgtcggtgtcggacatgacacgtgtgtggcacgggaacacaccttatccgaggagtgtccgtgctt 12324034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 282 - 376
Target Start/End: Complemental strand, 12797377 - 12797283
Alignment:
Q  282 aaaatcacaaaatgcagtgtaattatatgtgtcggtgtcagacacgacacgtgtcggacacggggacacaccttatccaaggagtgttcgtgctt 376  Q
    ||||||||| ||| ||||||||||| | ||||||||||| ||||||| || |||| ||||| ||||||   || |||| |||| |||||||||||    
T  12797377 aaaatcacataattcagtgtaattacaagtgtcggtgtcggacacgatacatgtctgacaccgggacaagtctaatccgaggaatgttcgtgctt 12797283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 290 - 328
Target Start/End: Complemental strand, 20950458 - 20950420
Alignment:
Q  290 aaaatgcagtgtaattatatgtgtcggtgtcagacacga 328  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  20950458 aaaattcagtgtaattatatgtgtcggtgtcagacacga 20950420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 310 - 376
Target Start/End: Complemental strand, 22234890 - 22234824
Alignment:
Q  310 gtgtcggtgtcagacacgacacgtgtcggacacggggacacaccttatccaaggagtgttcgtgctt 376  Q
    ||||||||||| ||||||||||||||| |||||  ||||||| || |||| || |||||||||||||    
T  22234890 gtgtcggtgtctgacacgacacgtgtccgacaccaggacacagctaatccgagaagtgttcgtgctt 22234824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 23566535 - 23566581
Alignment:
Q  1 ccaagctactaactctagtttacctatcaactaaccatagttgatta 47  Q
    |||||||||||| |||||||||| ||||||||||| |||||||||||    
T  23566535 ccaagctactaagtctagtttacttatcaactaactatagttgatta 23566581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 282 - 368
Target Start/End: Complemental strand, 28964287 - 28964201
Alignment:
Q  282 aaaatcacaaaatgcagtgtaattatatgtgtcggtgtcagacacgacacgtgtcggacacggggacacaccttatccaaggagtgt 368  Q
    ||||||||| ||| ||||||||||| | ||||| ||||| |||||||||| | || ||||| ||||||| ||| |||| ||||||||    
T  28964287 aaaatcacataattcagtgtaattacaagtgtctgtgtcggacacgacacatatccgacactgggacacgcctaatccgaggagtgt 28964201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 52518804 - 52518758
Alignment:
Q  1 ccaagctactaactctagtttacctatcaactaaccatagttgatta 47  Q
    |||| |||||||||||||||||| ||||||||||| |||||||||||    
T  52518804 ccaaactactaactctagtttacttatcaactaactatagttgatta 52518758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 52520646 - 52520600
Alignment:
Q  1 ccaagctactaactctagtttacctatcaactaaccatagttgatta 47  Q
    |||| |||||||||||||||||| ||||||||||| |||||||||||    
T  52520646 ccaaactactaactctagtttacttatcaactaactatagttgatta 52520600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 311 - 376
Target Start/End: Complemental strand, 24613700 - 24613635
Alignment:
Q  311 tgtcggtgtcagacacgacacgtgtcggacacggggacacaccttatccaaggagtgttcgtgctt 376  Q
    |||||||||||||||||||||||||| |||||  ||||||  || |||| |||||||| |||||||    
T  24613700 tgtcggtgtcagacacgacacgtgtctgacaccaggacacgtctaatcctaggagtgtccgtgctt 24613635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 282 - 331
Target Start/End: Complemental strand, 40179675 - 40179626
Alignment:
Q  282 aaaatcacaaaatgcagtgtaattatatgtgtcggtgtcagacacgacac 331  Q
    ||||||||| ||| ||||||||||||||| ||||||||| ||||||||||    
T  40179675 aaaatcacataattcagtgtaattatatgcgtcggtgtcggacacgacac 40179626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 316 - 376
Target Start/End: Complemental strand, 3947766 - 3947706
Alignment:
Q  316 gtgtcagacacgacacgtgtcggacacggggacacaccttatccaaggagtgttcgtgctt 376  Q
    ||||| ||||||||||||||| |||||  |||||||||| |||| |||||||| |||||||    
T  3947766 gtgtcggacacgacacgtgtccgacaccaggacacacctaatccgaggagtgtccgtgctt 3947706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 282 - 350
Target Start/End: Original strand, 29205464 - 29205532
Alignment:
Q  282 aaaatcacaaaatgcagtgtaattatatgtgtcggtgtcagacacgacacgtgtcggacacggggacac 350  Q
    ||||||||| ||| ||||||||||| | ||||||||||  |||||||||| |||| ||||| |||||||    
T  29205464 aaaatcacataattcagtgtaattacaagtgtcggtgttggacacgacacatgtccgacaccgggacac 29205532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 297 - 376
Target Start/End: Complemental strand, 2361999 - 2361920
Alignment:
Q  297 agtgtaattatatgtgtcggtgtcagacacgacacgtgtcggacacggggacacaccttatccaaggagtgttcgtgctt 376  Q
    |||||||||| | ||||||||||| |||||||| |||||| ||||| | ||||||||| |||  | |||||| |||||||    
T  2361999 agtgtaattaaaagtgtcggtgtcggacacgactcgtgtctgacaccgagacacacctaatctgacgagtgtccgtgctt 2361920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 217 - 320
Target Start/End: Original strand, 13783236 - 13783339
Alignment:
Q  217 ggatacggacacggacaccgaaaacgacacggatacggacacgccgacacaactaannnnnnnagaaaatcacaaaatgcagtgtaattatatgtgtcgg 316  Q
    |||||| |||||||||| |  ||| |||||||| || ||||| |||||||  ||||       |||| |||||||||| ||||||||||||||||| |||    
T  13783236 ggatacagacacggacatctcaaatgacacggacactgacacaccgacaccgctaattatttgagaagatcacaaaattcagtgtaattatatgtgccgg 13783335  T
Q  317 tgtc 320  Q
    ||||    
T  13783336 tgtc 13783339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 322 - 376
Target Start/End: Original strand, 29205528 - 29205582
Alignment:
Q  322 gacacgacacgtgtcggacacggggacacaccttatccaaggagtgttcgtgctt 376  Q
    |||||||||| |||| ||||| ||||||| ||| |||| ||||||||||||||||    
T  29205528 gacacgacacatgtccgacactgggacacgcctaatccgaggagtgttcgtgctt 29205582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 282 - 336
Target Start/End: Complemental strand, 36509131 - 36509077
Alignment:
Q  282 aaaatcacaaaatgcagtgtaattatatgtgtcggtgtcagacacgacacgtgtc 336  Q
    ||||||||| |||  |||||||||||||||||||| ||| ||| |||||||||||    
T  36509131 aaaatcacataatcaagtgtaattatatgtgtcggcgtcggacgcgacacgtgtc 36509077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 310 - 356
Target Start/End: Original strand, 44362714 - 44362760
Alignment:
Q  310 gtgtcggtgtcagacacgacacgtgtcggacacggggacacacctta 356  Q
    |||| ||||||||||||||||||| |||||||  |||||||||||||    
T  44362714 gtgttggtgtcagacacgacacgtatcggacatcgggacacacctta 44362760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 282 - 376
Target Start/End: Complemental strand, 715646 - 715550
Alignment:
Q  282 aaaatcacaaaatgcagtgtaattatatgtgtcggtgtc--agacacgacacgtgtcggacacggggacacaccttatccaaggagtgttcgtgctt 376  Q
    ||||||||| ||| ||||||||||| | |||| ||||||    ||||||||| |||| ||||| ||||||| ||| |||| |||||||| |||||||    
T  715646 aaaatcacataattcagtgtaattacaagtgttggtgtcttgtacacgacacatgtccgacacagggacacgcctaatccgaggagtgtccgtgctt 715550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 282 - 376
Target Start/End: Complemental strand, 752972 - 752876
Alignment:
Q  282 aaaatcacaaaatgcagtgtaattatatgtgtcggtgtc--agacacgacacgtgtcggacacggggacacaccttatccaaggagtgttcgtgctt 376  Q
    ||||||||| ||| ||||||||||| | |||| ||||||    ||||||||| |||| ||||| ||||||| ||| |||| |||||||| |||||||    
T  752972 aaaatcacataattcagtgtaattacaagtgttggtgtcttgtacacgacacatgtccgacacagggacacgcctaatccgaggagtgtccgtgctt 752876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 47
Target Start/End: Original strand, 3274627 - 3274672
Alignment:
Q  2 caagctactaactctagtttacctatcaactaaccatagttgatta 47  Q
    ||||| ||||||||| |||||||||||||||||  |||||||||||    
T  3274627 caagccactaactcttgtttacctatcaactaattatagttgatta 3274672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 280 - 321
Target Start/End: Complemental strand, 5775399 - 5775358
Alignment:
Q  280 agaaaatcacaaaatgcagtgtaattatatgtgtcggtgtca 321  Q
    ||||||||||| |||  |||||||||||||||||||||||||    
T  5775399 agaaaatcacataattaagtgtaattatatgtgtcggtgtca 5775358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #48
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 280 - 368
Target Start/End: Complemental strand, 30103397 - 30103310
Alignment:
Q  280 agaaaatcacaaaatgcagtgtaattatatgtgtcggtgtcagacacgacacgtgtcggacacggggacacaccttatccaaggagtgt 368  Q
    ||||||||||| |||  |||||||| |||||||||||||||| ||||||||  |||| ||||   ||||||| || |||| ||||||||    
T  30103397 agaaaatcacataatt-agtgtaatcatatgtgtcggtgtcaaacacgacatatgtctgacatcaggacacatctaatccgaggagtgt 30103310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #49
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 280 - 316
Target Start/End: Original strand, 40613468 - 40613504
Alignment:
Q  280 agaaaatcacaaaatgcagtgtaattatatgtgtcgg 316  Q
    ||||||||||| ||| |||||||||||||||||||||    
T  40613468 agaaaatcacataattcagtgtaattatatgtgtcgg 40613504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 1e-23; HSPs: 38)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 37405636 - 37405700
Alignment:
Q  1 ccaagctactaactctagtttacctatcaactaaccatagttgattattcatactctaataaaaa 65  Q
    |||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||    
T  37405636 ccaagctactaactctagtttatctatcaactaactatagttgattattcatactctaataaaaa 37405700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 218 - 368
Target Start/End: Complemental strand, 18213137 - 18212986
Alignment:
Q  218 gatacggacacggacaccgaaaacgacacggatacggacacgccgacacaactaannnnnnn-agaaaatcacaaaatgcagtgtaattatatgtgtcgg 316  Q
    |||||| ||||| |||||  | |||||||||| || || ||||||||||||||||        ||||||||||| |||  ||||||||||||||||||||    
T  18213137 gatacgaacacgaacaccagacacgacacggacactgatacgccgacacaactaattttttttagaaaatcacataatttagtgtaattatatgtgtcgg 18213038  T
Q  317 tgtcagacacgacacgtgtcggacacggggacacaccttatccaaggagtgt 368  Q
    |||| |||||||| | | || ||||||||||||| |||||||| ||||||||    
T  18213037 tgtcggacacgacccctttctgacacggggacacgccttatccgaggagtgt 18212986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 280 - 376
Target Start/End: Complemental strand, 32287504 - 32287408
Alignment:
Q  280 agaaaatcacaaaatgcagtgtaattatatgtgtcggtgtcagacacgacacgtgtcggacacggggacacaccttatccaaggagtgttcgtgctt 376  Q
    ||||||||||| ||| ||||| || |||||||||||||||| |||| |||| ||||| ||||| ||||||||||| |||| |||||||| |||||||    
T  32287504 agaaaatcacataattcagtgcaagtatatgtgtcggtgtcggacatgacaagtgtccgacaccgggacacacctaatccgaggagtgtccgtgctt 32287408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 280 - 359
Target Start/End: Original strand, 39138462 - 39138541
Alignment:
Q  280 agaaaatcacaaaatgcagtgtaattatatgtgtcggtgtcagacacgacacgtgtcggacacggggacacaccttatcc 359  Q
    ||||||||||| ||| |||||||||||||| |||||||||| ||||||| || ||||  |||||||||||| ||||||||    
T  39138462 agaaaatcacataattcagtgtaattatatatgtcggtgtcggacacgatacatgtctaacacggggacacgccttatcc 39138541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 299 - 376
Target Start/End: Original strand, 598245 - 598322
Alignment:
Q  299 tgtaattatatgtgtcggtgtcagacacgacacgtgtcggacacggggacacaccttatccaaggagtgttcgtgctt 376  Q
    ||||||| || ||||||||||||||||||||||||||| ||||| ||||||| ||| |||| || ||||| |||||||    
T  598245 tgtaattgtaagtgtcggtgtcagacacgacacgtgtccgacaccgggacacgcctaatccgagaagtgtccgtgctt 598322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 25471957 - 25472018
Alignment:
Q  1 ccaagctactaactctagtttacctatcaactaaccatagttgattattcatactctaataa 62  Q
    |||| ||||||||||||||| |||||||||||||| |||||| |||||||||||| ||||||    
T  25471957 ccaacctactaactctagttaacctatcaactaactatagttaattattcatactataataa 25472018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 280 - 368
Target Start/End: Complemental strand, 27093454 - 27093366
Alignment:
Q  280 agaaaatcacaaaatgcagtgtaattatatgtgtcggtgtcagacacgacacgtgtcggacacggggacacaccttatccaaggagtgt 368  Q
    ||||||||||| |||  |||||||||||||| |||||||| |||||||||| ||||| |||||  |||||||||| |||| | ||||||    
T  27093454 agaaaatcacataatttagtgtaattatatgcgtcggtgttagacacgacatgtgtccgacactaggacacacctaatccgatgagtgt 27093366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 280 - 368
Target Start/End: Original strand, 27184847 - 27184935
Alignment:
Q  280 agaaaatcacaaaatgcagtgtaattatatgtgtcggtgtcagacacgacacgtgtcggacacggggacacaccttatccaaggagtgt 368  Q
    ||||||||||| |||  |||||||||||||| |||||||| |||||||||| ||||| |||||  |||||||||| |||| | ||||||    
T  27184847 agaaaatcacataatttagtgtaattatatgcgtcggtgttagacacgacatgtgtccgacactaggacacacctaatccgatgagtgt 27184935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 286 - 373
Target Start/End: Original strand, 33994236 - 33994323
Alignment:
Q  286 tcacaaaatgcagtgtaattatatgtgtcggtgtcagacacgacacgtgtcggacacggggacacaccttatccaaggagtgttcgtg 373  Q
    ||||| ||| ||||| ||||| | |||||||||||||||||||||| ||||  |||| | ||||| ||| ||||||||||||||||||    
T  33994236 tcacataattcagtgcaattacaagtgtcggtgtcagacacgacacatgtccaacaccgagacacgcctaatccaaggagtgttcgtg 33994323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 280 - 350
Target Start/End: Original strand, 5835265 - 5835335
Alignment:
Q  280 agaaaatcacaaaatgcagtgtaattatatgtgtcggtgtcagacacgacacgtgtcggacacggggacac 350  Q
    ||||||| ||| ||| |||||||||||||||||||||||||||||| |||| ||||| || || |||||||    
T  5835265 agaaaataacataattcagtgtaattatatgtgtcggtgtcagacatgacatgtgtctgataccgggacac 5835335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 282 - 376
Target Start/End: Original strand, 15680829 - 15680923
Alignment:
Q  282 aaaatcacaaaatgcagtgtaattatatgtgtcggtgtcagacacgacacgtgtcggacacggggacacaccttatccaaggagtgttcgtgctt 376  Q
    ||||||||| |||  |||||||||||| ||||||||||| ||||||||||||||| ||||| | |||||  || || | |||||||| |||||||    
T  15680829 aaaatcacataatttagtgtaattataagtgtcggtgtcggacacgacacgtgtccgacaccgagacacgtctaattcgaggagtgtccgtgctt 15680923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 283 - 331
Target Start/End: Original strand, 640134 - 640182
Alignment:
Q  283 aaatcacaaaatgcagtgtaattatatgtgtcggtgtcagacacgacac 331  Q
    |||||||| ||| |||||||||||||||||||||||||||| |||||||    
T  640134 aaatcacataattcagtgtaattatatgtgtcggtgtcagatacgacac 640182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 280 - 376
Target Start/End: Original strand, 20549809 - 20549905
Alignment:
Q  280 agaaaatcacaaaatgcagtgtaattatatgtgtcggtgtcagacacgacacgtgtcggacacggggacacaccttatccaaggagtgttcgtgctt 376  Q
    ||||||||||  ||| ||||||||||||||||||||||||| ||||| |||| |||| ||||  | ||||| ||| |||| |||||||  |||||||    
T  20549809 agaaaatcacgtaattcagtgtaattatatgtgtcggtgtcggacacaacacatgtccgacaatgagacacgcctaatccgaggagtgcccgtgctt 20549905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 280 - 376
Target Start/End: Original strand, 21880170 - 21880266
Alignment:
Q  280 agaaaatcacaaaatgcagtgtaattatatgtgtcggtgtcagacacgacacgtgtcggacacggggacacaccttatccaaggagtgttcgtgctt 376  Q
    ||||||| ||| ||| ||||||||||| | ||||||||||| |||||||||| |||| |||||  |||||| ||| |||| || ||||| |||||||    
T  21880170 agaaaattacataattcagtgtaattacaagtgtcggtgtcggacacgacacatgtccgacaccaggacacgcctaatccgagaagtgtccgtgctt 21880266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 280 - 331
Target Start/End: Original strand, 9482952 - 9483003
Alignment:
Q  280 agaaaatcacaaaatgcagtgtaattatatgtgtcggtgtcagacacgacac 331  Q
    ||||||||||| ||| ||||||||||||||||||||||||| ||| ||||||    
T  9482952 agaaaatcacacaattcagtgtaattatatgtgtcggtgtcggacgcgacac 9483003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 282 - 376
Target Start/End: Complemental strand, 43027508 - 43027409
Alignment:
Q  282 aaaatcacaaaatgcagtgtaattatatgtgtcggtgtc-----agacacgacacgtgtcggacacggggacacaccttatccaaggagtgttcgtgctt 376  Q
    ||||||||| |||||||||||| || | |||||||||||     |||||||||||||||| ||||| ||||||| ||| |||| | |||||| |||||||    
T  43027508 aaaatcacataatgcagtgtaaatacaagtgtcggtgtcgtgtcagacacgacacgtgtccgacaccgggacacgcctaatccgatgagtgtccgtgctt 43027409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 4895629 - 4895583
Alignment:
Q  1 ccaagctactaactctagtttacctatcaactaaccatagttgatta 47  Q
    |||| |||||||||||||||||| ||||||||||| |||||||||||    
T  4895629 ccaaactactaactctagtttacttatcaactaactatagttgatta 4895583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 20046683 - 20046729
Alignment:
Q  1 ccaagctactaactctagtttacctatcaactaaccatagttgatta 47  Q
    |||| |||||||||||||||||| ||||||||||| |||||||||||    
T  20046683 ccaaactactaactctagtttacttatcaactaactatagttgatta 20046729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 221 - 320
Target Start/End: Original strand, 27945000 - 27945099
Alignment:
Q  221 acggacacggacaccgaaaacgacacggatacggacacgccgacacaactaannnnnnnagaaaatcacaaaatgcagtgtaattatatgtgtcggtgtc 320  Q
    ||||| |||||||||| | |||||||||| || ||||||||||||| |||||       ||||||| ||| ||| ||||||||||| | |||||||||||    
T  27945000 acggatacggacaccggacacgacacggacactgacacgccgacaccactaataatttgagaaaattacataattcagtgtaattacaagtgtcggtgtc 27945099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 28124774 - 28124820
Alignment:
Q  1 ccaagctactaactctagtttacctatcaactaaccatagttgatta 47  Q
    |||| |||||||||||||||||| ||||||||||| |||||||||||    
T  28124774 ccaaactactaactctagtttacttatcaactaactatagttgatta 28124820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 28126601 - 28126647
Alignment:
Q  1 ccaagctactaactctagtttacctatcaactaaccatagttgatta 47  Q
    |||| |||||||||||||||||| ||||||||||| |||||||||||    
T  28126601 ccaaactactaactctagtttacttatcaactaactatagttgatta 28126647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 44963208 - 44963162
Alignment:
Q  1 ccaagctactaactctagtttacctatcaactaaccatagttgatta 47  Q
    ||||||||||||| ||||||||| ||||||||||| |||||||||||    
T  44963208 ccaagctactaaccctagtttacttatcaactaactatagttgatta 44963162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 280 - 368
Target Start/End: Original strand, 12278853 - 12278941
Alignment:
Q  280 agaaaatcacaaaatgcagtgtaattatatgtgtcggtgtcagaca-cgacacgtgtcggacacggggacacaccttatccaaggagtgt 368  Q
    ||||||| ||| ||| ||||||||||||||||||| ||||| |||| | || |||||| ||||| ||||||||||| |||| ||||||||    
T  12278853 agaaaatgacataattcagtgtaattatatgtgtc-gtgtcggacaccaacgcgtgtctgacaccgggacacacctaatcctaggagtgt 12278941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 316 - 376
Target Start/End: Complemental strand, 32094020 - 32093959
Alignment:
Q  316 gtgtcagacacgacacgtgtcggacac-ggggacacaccttatccaaggagtgttcgtgctt 376  Q
    ||||| ||||||||||||||| ||||| |||||||| ||| |||| ||||||||||||||||    
T  32094020 gtgtcggacacgacacgtgtccgacaccggggacacgcctaatccgaggagtgttcgtgctt 32093959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 316 - 376
Target Start/End: Complemental strand, 5409836 - 5409776
Alignment:
Q  316 gtgtcagacacgacacgtgtcggacacggggacacaccttatccaaggagtgttcgtgctt 376  Q
    ||||| ||||||||||||||| ||||| ||||||| ||| |||| |||||||| |||||||    
T  5409836 gtgtcggacacgacacgtgtccgacaccgggacacgcctaatccgaggagtgtccgtgctt 5409776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 316 - 376
Target Start/End: Original strand, 9778559 - 9778619
Alignment:
Q  316 gtgtcagacacgacacgtgtcggacacggggacacaccttatccaaggagtgttcgtgctt 376  Q
    ||||| ||||| ||||||||| ||||| ||||||| ||| ||||||||||||| |||||||    
T  9778559 gtgtcggacacaacacgtgtccgacaccgggacacgcctaatccaaggagtgtccgtgctt 9778619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 280 - 320
Target Start/End: Complemental strand, 22602751 - 22602711
Alignment:
Q  280 agaaaatcacaaaatgcagtgtaattatatgtgtcggtgtc 320  Q
    ||||||||||| ||| |||||||||||||||||||||||||    
T  22602751 agaaaatcacataattcagtgtaattatatgtgtcggtgtc 22602711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 310 - 373
Target Start/End: Complemental strand, 26033461 - 26033398
Alignment:
Q  310 gtgtcggtgtcagacacgacacgtgtcggacacggggacacaccttatccaaggagtgttcgtg 373  Q
    |||||||||||||||| |||||||||| || || | ||||||||| |||| |||||||| ||||    
T  26033461 gtgtcggtgtcagacatgacacgtgtccgataccgcgacacacctaatccgaggagtgtccgtg 26033398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 217 - 320
Target Start/End: Original strand, 1433409 - 1433512
Alignment:
Q  217 ggatacggacacggacaccgaaaacgacacggatacggacacgccgacacaactaannnnnnnagaaaatcacaaaatgcagtgtaattatatgtgtcgg 316  Q
    |||||||| ||||||||||||| |||||||||| |  |||||||||||||   |||       |||||||||||  ||   |||||||||||||||||||    
T  1433409 ggatacgggcacggacaccgaacacgacacggacattgacacgccgacaccgttaataatttgagaaaatcacatcatttggtgtaattatatgtgtcgg 1433508  T
Q  317 tgtc 320  Q
    ||||    
T  1433509 tgtc 1433512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 217 - 316
Target Start/End: Complemental strand, 21141086 - 21140987
Alignment:
Q  217 ggatacggacacggacaccgaaaacgacacggatacggacacgccgacacaactaannnnnnnagaaaatcacaaaatgcagtgtaattatatgtgtcgg 316  Q
    |||||||||||||||||||| | ||||||||||  | |||||| |||||| |||||       ||||||||| | ||| |||||| |||||| |||||||    
T  21141086 ggatacggacacggacaccgtacacgacacggacgccgacacgtcgacaccactaataatttaagaaaatcatataattcagtgtgattataggtgtcgg 21140987  T

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Target: chr7; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 254 - 368
Target Start/End: Original strand, 22868034 - 22868153
Alignment:
Q  254 gacacgccgacacaactaannnnnnnagaaaatcacaaaatgcagtgtaattatatgtgtcggtgtca-----gacacgacacgtgtcggacacggggac 348  Q
    ||||||||||||| |||||       ||||||||||| ||| ||||||||||||||||||| || |||      |||| ||||||||| ||||| |||||    
T  22868034 gacacgccgacaccactaataatatgagaaaatcacataattcagtgtaattatatgtgtcagtatcaaacacaacacaacacgtgtcagacaccgggac 22868133  T
Q  349 acaccttatccaaggagtgt 368  Q
    |||| | |||| ||||||||    
T  22868134 acacataatccgaggagtgt 22868153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 217 - 267
Target Start/End: Complemental strand, 23860035 - 23859985
Alignment:
Q  217 ggatacggacacggacaccgaaaacgacacggatacggacacgccgacaca 267  Q
    ||||||||||||||||| |||| |||||| |||||| ||||| ||||||||    
T  23860035 ggatacggacacggacatcgaacacgacatggatactgacacaccgacaca 23859985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 310 - 376
Target Start/End: Original strand, 24339701 - 24339767
Alignment:
Q  310 gtgtcggtgtcagacacgacacgtgtcggacacggggacacaccttatccaaggagtgttcgtgctt 376  Q
    ||||||||||| |||||||||||| || ||||| ||||||| ||| |||| |||||||  |||||||    
T  24339701 gtgtcggtgtcggacacgacacgtatccgacaccgggacacgcctaatccgaggagtgcccgtgctt 24339767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 282 - 368
Target Start/End: Original strand, 26733324 - 26733410
Alignment:
Q  282 aaaatcacaaaatgcagtgtaattatatgtgtcggtgtcagacacgacacgtgtcggacacggggacacaccttatccaaggagtgt 368  Q
    ||||||||| ||| |||| |||||| ||||||||||||| |||||||| | |||| || ||||| |||| ||| |||| ||| ||||    
T  26733324 aaaatcacataattcagtctaattaaatgtgtcggtgtcggacacgacgcatgtccgatacgggaacacgcctaatccgaggggtgt 26733410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 280 - 368
Target Start/End: Original strand, 1401043 - 1401129
Alignment:
Q  280 agaaaatcacaaaatgcagtgtaattatatgtgtcggtgtcagacacgacacgtgtcggacacggggacacaccttatccaaggagtgt 368  Q
    ||||| ||||| ||| ||||||||||||| || |||||||| |||||||||  |||| ||||  ||||||||||| |||  ||||||||    
T  1401043 agaaactcacataattcagtgtaattataagtatcggtgtccgacacgaca--tgtccgacatcgggacacacctaatctgaggagtgt 1401129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 297 - 350
Target Start/End: Original strand, 21864843 - 21864896
Alignment:
Q  297 agtgtaattatatgtgtcggtgtcagacacgacacgtgtcggacacggggacac 350  Q
    |||||||||| | |||||| |||| ||||||||||||||| ||||| |||||||    
T  21864843 agtgtaattacaagtgtcgctgtcggacacgacacgtgtccgacaccgggacac 21864896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 296 - 341
Target Start/End: Original strand, 22484059 - 22484104
Alignment:
Q  296 cagtgtaattatatgtgtcggtgtcagacacgacacgtgtcggaca 341  Q
    |||| ||||||||||||||||||||||||| ||||| |||| ||||    
T  22484059 cagtataattatatgtgtcggtgtcagacatgacacatgtccgaca 22484104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 217 - 249
Target Start/End: Complemental strand, 9408445 - 9408413
Alignment:
Q  217 ggatacggacacggacaccgaaaacgacacgga 249  Q
    |||||||||||||||||||||| ||||||||||    
T  9408445 ggatacggacacggacaccgaatacgacacgga 9408413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0116 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0116
Description:

Target: scaffold0116; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 217 - 320
Target Start/End: Original strand, 9853 - 9956
Alignment:
Q  217 ggatacggacacggacaccgaaaacgacacggatacggacacgccgacacaactaannnnnnnagaaaatcacaaaatgcagtgtaattatatgtgtcgg 316  Q
    |||||||||||||||||||| | |||||| ||| || |||||||||||||| ||||       ||||||||| |||||||||||||||||||||||||||    
T  9853 ggatacggacacggacaccggacacgacatggacaccgacacgccgacacagctaatttttttagaaaatcataaaatgcagtgtaattatatgtgtcgg 9952  T
Q  317 tgtc 320  Q
    ||||    
T  9953 tgtc 9956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 54; Significance: 8e-22; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 39190 - 39129
Alignment:
Q  1 ccaagctactaactctagtttacctatcaactaaccatagttgattattcatactctaataa 62  Q
    ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||    
T  39190 ccaagctactaactctagtttacttatcaactaactatagttgattattcatactctaataa 39129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0251 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 6271 - 6211
Alignment:
Q  1 ccaagctactaactctagtttacctatcaactaaccatagttgattattcatactctaata 61  Q
    |||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||    
T  6271 ccaagctactaactctagtttacctatcaattaactatagttgattattcatactctaata 6211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 58831 - 58762
Alignment:
Q  1 ccaagctactaactctagtttacctatcaactaaccatagttgattattcatactctaataaaaatcatg 70  Q
    ||||||||||||||||||||||||||  ||||||| ||||||||||||||||| ||||||| ||||||||    
T  58831 ccaagctactaactctagtttacctactaactaactatagttgattattcatattctaatacaaatcatg 58762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 210 - 376
Target Start/End: Original strand, 8746 - 8912
Alignment:
Q  210 gaagaatggatacggacacggacaccgaaaacgacacggatacggacacgccgacacaactaannnnnnnagaaaatcacaaaatgcagtgtaattatat 309  Q
    |||| |||||||||||||||||||||| | |||||||||| || |||||||||||||| ||||       | ||||||| |  ||  |||||||||| |     
T  8746 gaagcatggatacggacacggacaccggacacgacacggacactgacacgccgacacagctaataatttgaaaaaatcatattatttagtgtaattacaa 8845  T
Q  310 gtgtcggtgtcagacacgacacgtgtcggacacggggacacaccttatccaaggagtgttcgtgctt 376  Q
    ||||||||||| ||||||||||||||| ||||| | ||||| ||| |||  |||||| | |||||||    
T  8846 gtgtcggtgtcggacacgacacgtgtccgacaccgagacacgcctaatctgaggagtctccgtgctt 8912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0306 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: scaffold0306
Description:

Target: scaffold0306; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 221 - 376
Target Start/End: Original strand, 13359 - 13520
Alignment:
Q  221 acggacacggacaccgaaaacgacacggatacggacacgccgacacaactaannnnnnnagaaaatcacaaaatgcagtgtaattatatg------tgtc 314  Q
    ||||| |||||||||| | | |||||||| || |||||||||||||||||||       ||||||||||| ||| ||||| ||||| | |      ||||    
T  13359 acggatacggacaccggagatgacacggacactgacacgccgacacaactaataatttgagaaaatcacataattcagtgcaattacaagggtcggtgtc 13458  T
Q  315 ggtgtcagacacgacacgtgtcggacacggggacacaccttatccaaggagtgttcgtgctt 376  Q
    |||||| ||||||||||| ||| |||||  |||||||||| ||||||||||||| |||||||    
T  13459 ggtgtcggacacgacacgcgtctgacactaggacacacctaatccaaggagtgtccgtgctt 13520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0152 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: scaffold0152
Description:

Target: scaffold0152; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 221 - 376
Target Start/End: Complemental strand, 21968 - 21807
Alignment:
Q  221 acggacacggacaccgaaaacgacacggatacggacacgccgacacaactaannnnnnnagaaaatcacaaaatgcagtgtaattatatg------tgtc 314  Q
    ||||| |||||||||| | | |||||||| || |||||||||||||||||||       ||||||||||| ||| ||||| ||||| | |      ||||    
T  21968 acggatacggacaccggagatgacacggacactgacacgccgacacaactaataatttgagaaaatcacataattcagtgcaattacaagggtcggtgtc 21869  T
Q  315 ggtgtcagacacgacacgtgtcggacacggggacacaccttatccaaggagtgttcgtgctt 376  Q
    |||||| ||||||||||| ||| |||||  |||||||||| ||||||||||||| |||||||    
T  21868 ggtgtcggacacgacacgcgtctgacactaggacacacctaatccaaggagtgtccgtgctt 21807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 282 - 376
Target Start/End: Original strand, 70298 - 70392
Alignment:
Q  282 aaaatcacaaaatgcagtgtaattatatgtgtcggtgtcagacacgacacgtgtcggacacggggacacaccttatccaaggagtgttcgtgctt 376  Q
    ||||| ||| ||| ||||||||||||| ||||||||||| ||||||||||||||| |||||  |||||  ||| |||| | ||||||||||||||    
T  70298 aaaataacataattcagtgtaattataagtgtcggtgtcggacacgacacgtgtccgacaccaggacatgcctaatccgatgagtgttcgtgctt 70392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0623 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: scaffold0623
Description:

Target: scaffold0623; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 280 - 320
Target Start/End: Complemental strand, 6037 - 5997
Alignment:
Q  280 agaaaatcacaaaatgcagtgtaattatatgtgtcggtgtc 320  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  6037 agaaaatcacaaaatgcagtgtaattatatgtgtcggtgtc 5997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0623; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 323 - 374
Target Start/End: Complemental strand, 5983 - 5932
Alignment:
Q  323 acacgacacgtgtcggacacggggacacaccttatccaaggagtgttcgtgc 374  Q
    |||||||||||||| ||||| | ||||| ||||||||||||||||| |||||    
T  5983 acacgacacgtgtctgacacagagacacgccttatccaaggagtgtccgtgc 5932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0361 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 252 - 376
Target Start/End: Original strand, 14520 - 14641
Alignment:
Q  252 cggacacgccgacacaactaannnnnnnagaaaatcacaaaatgcagtgtaattatatgtgtcggtgtcagacacgacacgtgtcggacacggggacaca 351  Q
    |||||||||||||||||||||       | ||||||||| ||| ||||||||||| | |||   ||||| ||||||||||||||| ||||| | |||||     
T  14520 cggacacgccgacacaactaataatttgaaaaaatcacataattcagtgtaattacaagtg---gtgtcggacacgacacgtgtccgacaccgagacacg 14616  T
Q  352 ccttatccaaggagtgttcgtgctt 376  Q
    ||| ||| ||||||||| |||||||    
T  14617 cctaatcgaaggagtgtacgtgctt 14641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 280 - 342
Target Start/End: Original strand, 90861 - 90923
Alignment:
Q  280 agaaaatcacaaaatgcagtgtaattatatgtgtcggtgtcagacacgacacgtgtcggacac 342  Q
    ||||||||| | ||| |||||||||||||| ||||| |||||||||| ||||||||| |||||    
T  90861 agaaaatcatataattcagtgtaattatatatgtcgatgtcagacacaacacgtgtccgacac 90923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0279 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0279
Description:

Target: scaffold0279; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 280 - 336
Target Start/End: Original strand, 17788 - 17844
Alignment:
Q  280 agaaaatcacaaaatgcagtgtaattatatgtgtcggtgtcagacacgacacgtgtc 336  Q
    ||||||||||| ||  | |||||||| |||||||||||||||||||||||| |||||    
T  17788 agaaaatcacacaactcggtgtaattgtatgtgtcggtgtcagacacgacatgtgtc 17844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 296 - 376
Target Start/End: Complemental strand, 45555 - 45475
Alignment:
Q  296 cagtgtaattatatgtgtcggtgtcagacacgacacgtgtcggacacggggacacaccttatccaaggagtgttcgtgctt 376  Q
    ||||||||||| | ||||||||||| ||||||||||||||| ||||| | ||||  ||| |||||| || ||| |||||||    
T  45555 cagtgtaattacaagtgtcggtgtcggacacgacacgtgtctgacaccgcgacatgcctaatccaaagattgtacgtgctt 45475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 210 - 318
Target Start/End: Original strand, 130430 - 130538
Alignment:
Q  210 gaagaatggatacggacacggacaccgaaaacgacacggatacggacacgccgacacaactaannnnnnnagaaaatcacaaaatgcagtgtaattatat 309  Q
    |||| |||||||||||||||||||||| | |||||||||| |  |||| |||||||||  |||       | ||||||||| ||| ||||||||||| |     
T  130430 gaagcatggatacggacacggacaccggacacgacacggacaatgacaagccgacacagttaatagtttgaaaaaatcacataattcagtgtaattacaa 130529  T
Q  310 gtgtcggtg 318  Q
    |||||||||    
T  130530 gtgtcggtg 130538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 310 - 376
Target Start/End: Original strand, 241653 - 241719
Alignment:
Q  310 gtgtcggtgtcagacacgacacgtgtcggacacggggacacaccttatccaaggagtgttcgtgctt 376  Q
    |||| |||||| ||||||||||||||| ||||| ||||||| ||| |||| || ||||| |||||||    
T  241653 gtgttggtgtcggacacgacacgtgtccgacaccgggacacgcctaatccgagaagtgtccgtgctt 241719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0793 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0793
Description:

Target: scaffold0793; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 282 - 376
Target Start/End: Complemental strand, 4922 - 4826
Alignment:
Q  282 aaaatcacaaaatgcagtgtaattatatgtgtcggtgtc--agacacgacacgtgtcggacacggggacacaccttatccaaggagtgttcgtgctt 376  Q
    ||||||||| ||| ||||||||||| | |||| ||||||    ||||||||| |||| ||||| ||||||| ||| |||| |||||||| |||||||    
T  4922 aaaatcacataattcagtgtaattacaagtgttggtgtcttgtacacgacacatgtccgacacagggacacgcctaatccgaggagtgtccgtgctt 4826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0380 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0380
Description:

Target: scaffold0380; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 323 - 376
Target Start/End: Original strand, 8662 - 8715
Alignment:
Q  323 acacgacacgtgtcggacacggggacacaccttatccaaggagtgttcgtgctt 376  Q
    |||||||||||||| ||||| |||| || ||| ||||||||||||| |||||||    
T  8662 acacgacacgtgtccgacactgggatacgcctaatccaaggagtgtccgtgctt 8715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0123 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 280 - 317
Target Start/End: Complemental strand, 44566 - 44529
Alignment:
Q  280 agaaaatcacaaaatgcagtgtaattatatgtgtcggt 317  Q
    ||||||||||| ||| ||||||||||||||||||||||    
T  44566 agaaaatcacataattcagtgtaattatatgtgtcggt 44529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 310 - 375
Target Start/End: Original strand, 2987 - 3052
Alignment:
Q  310 gtgtcggtgtcagacacgacacgtgtcggacacggggacacaccttatccaaggagtgttcgtgct 375  Q
    |||||||| |||||||||||||||||  ||||| || |||| ||| |||| |||||||| ||||||    
T  2987 gtgtcggtatcagacacgacacgtgttcgacaccggaacacgcctaatccgaggagtgtccgtgct 3052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 280 - 320
Target Start/End: Complemental strand, 9788 - 9748
Alignment:
Q  280 agaaaatcacaaaatgcagtgtaattatatgtgtcggtgtc 320  Q
    ||||||||||  ||| |||||||||||||||||||||||||    
T  9788 agaaaatcacttaattcagtgtaattatatgtgtcggtgtc 9748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 280 - 320
Target Start/End: Complemental strand, 135353 - 135313
Alignment:
Q  280 agaaaatcacaaaatgcagtgtaattatatgtgtcggtgtc 320  Q
    ||||||||||| ||| | |||||||||||||||||||||||    
T  135353 agaaaatcacataattctgtgtaattatatgtgtcggtgtc 135313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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