View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8911_low_55 (Length: 466)

Name: NF8911_low_55
Description: NF8911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8911_low_55
NF8911_low_55
[»] chr6 (25 HSPs)
chr6 (84-337)||(10083213-10083467)
chr6 (184-247)||(10095691-10095754)
chr6 (169-247)||(10079008-10079086)
chr6 (266-333)||(10079196-10079263)
chr6 (266-330)||(10077529-10077593)
chr6 (409-453)||(10083539-10083583)
chr6 (184-234)||(16015159-16015209)
chr6 (409-453)||(10095979-10096023)
chr6 (269-333)||(18344952-18345016)
chr6 (1-54)||(2153902-2153955)
chr6 (3-52)||(6389736-6389785)
chr6 (1-53)||(9658871-9658923)
chr6 (187-234)||(18344804-18344851)
chr6 (213-247)||(10076591-10076625)
chr6 (1-54)||(7625113-7625166)
chr6 (1-53)||(5732525-5732577)
chr6 (1-53)||(7977845-7977897)
chr6 (105-141)||(10078977-10079013)
chr6 (409-453)||(10079326-10079370)
chr6 (273-309)||(10266434-10266470)
chr6 (1-53)||(12696316-12696368)
chr6 (1-53)||(17841604-17841656)
chr6 (1-53)||(18252766-18252818)
chr6 (1-53)||(19040344-19040396)
chr6 (1-37)||(25038086-25038122)
[»] chr4 (14 HSPs)
chr4 (1-54)||(24343498-24343551)
chr4 (269-333)||(13345312-13345376)
chr4 (3-53)||(20743295-20743345)
chr4 (269-333)||(35857283-35857347)
chr4 (187-234)||(617714-617761)
chr4 (187-234)||(13345165-13345211)
chr4 (187-234)||(31921765-31921812)
chr4 (1-51)||(13134444-13134494)
chr4 (1-47)||(32910549-32910595)
chr4 (188-234)||(49711401-49711446)
chr4 (4-53)||(34515892-34515941)
chr4 (269-333)||(617549-617613)
chr4 (1-53)||(2361990-2362042)
chr4 (6-54)||(7012057-7012105)
[»] chr5 (16 HSPs)
chr5 (269-333)||(27882460-27882524)
chr5 (1-53)||(27144455-27144507)
chr5 (269-333)||(37374310-37374374)
chr5 (187-234)||(14190934-14190981)
chr5 (271-333)||(14190769-14190831)
chr5 (3-53)||(42469213-42469263)
chr5 (187-234)||(37374163-37374209)
chr5 (3-45)||(18162055-18162097)
chr5 (1-51)||(27932229-27932279)
chr5 (3-47)||(2577197-2577241)
chr5 (269-333)||(8427364-8427428)
chr5 (1-53)||(14674261-14674313)
chr5 (1-53)||(22013406-22013458)
chr5 (1-53)||(28588689-28588741)
chr5 (1-53)||(33178017-33178069)
chr5 (1-37)||(36838551-36838587)
[»] chr2 (15 HSPs)
chr2 (1-55)||(19573968-19574022)
chr2 (187-234)||(35611693-35611740)
chr2 (3-52)||(22084997-22085046)
chr2 (269-333)||(41918976-41919040)
chr2 (187-234)||(27194519-27194566)
chr2 (187-234)||(27844333-27844380)
chr2 (279-333)||(35611851-35611905)
chr2 (188-234)||(39441203-39441249)
chr2 (187-224)||(19817071-19817108)
chr2 (1-53)||(21616754-21616806)
chr2 (1-53)||(21782833-21782885)
chr2 (269-333)||(27194667-27194731)
chr2 (269-333)||(27844481-27844545)
chr2 (1-53)||(30404865-30404917)
chr2 (277-333)||(39441038-39441094)
[»] chr8 (14 HSPs)
chr8 (269-333)||(7823207-7823271)
chr8 (1-54)||(39954294-39954347)
chr8 (1-53)||(24669425-24669477)
chr8 (269-333)||(25217344-25217408)
chr8 (269-333)||(30326842-30326906)
chr8 (1-53)||(44067508-44067560)
chr8 (187-234)||(7823060-7823106)
chr8 (187-234)||(25207991-25208037)
chr8 (187-234)||(30326695-30326741)
chr8 (187-234)||(33861256-33861303)
chr8 (1-53)||(4786353-4786405)
chr8 (1-53)||(13844611-13844663)
chr8 (1-53)||(20873061-20873113)
chr8 (1-53)||(22595986-22596038)
[»] chr7 (16 HSPs)
chr7 (269-333)||(7038096-7038160)
chr7 (269-333)||(12784781-12784845)
chr7 (1-53)||(3554521-3554573)
chr7 (1-53)||(5235978-5236030)
chr7 (1-37)||(8160424-8160460)
chr7 (269-333)||(12779927-12779991)
chr7 (1-53)||(43249985-43250037)
chr7 (3-54)||(4017811-4017862)
chr7 (187-234)||(12784946-12784992)
chr7 (188-234)||(9000088-9000133)
chr7 (1-47)||(27093428-27093474)
chr7 (1-47)||(27184827-27184873)
chr7 (13-55)||(38804582-38804624)
chr7 (1-50)||(13770686-13770735)
chr7 (1-37)||(27732254-27732290)
chr7 (1-53)||(27945033-27945085)
[»] chr3 (11 HSPs)
chr3 (269-333)||(52919403-52919467)
chr3 (3-55)||(15864823-15864875)
chr3 (1-53)||(24205056-24205108)
chr3 (187-234)||(34002-34048)
chr3 (187-234)||(10967726-10967772)
chr3 (187-234)||(41763238-41763285)
chr3 (187-234)||(52919256-52919302)
chr3 (1-55)||(8903422-8903475)
chr3 (3-53)||(25074781-25074831)
chr3 (1-53)||(10268501-10268553)
chr3 (1-53)||(32804555-32804607)
[»] chr1 (15 HSPs)
chr1 (269-333)||(6309773-6309837)
chr1 (1-52)||(13436451-13436502)
chr1 (1-50)||(41877485-41877534)
chr1 (269-333)||(2331364-2331428)
chr1 (269-333)||(48234206-48234270)
chr1 (1-52)||(5376515-5376566)
chr1 (187-234)||(48234057-48234104)
chr1 (3-45)||(42004964-42005006)
chr1 (3-55)||(48415742-48415795)
chr1 (1-37)||(12713342-12713378)
chr1 (1-37)||(12717433-12717469)
chr1 (1-53)||(34257925-34257977)
chr1 (1-53)||(36878453-36878505)
chr1 (1-37)||(37055871-37055907)
chr1 (2-50)||(39953162-39953210)
[»] scaffold0356 (2 HSPs)
scaffold0356 (269-333)||(15005-15069)
scaffold0356 (187-234)||(15170-15217)
[»] scaffold0004 (1 HSPs)
scaffold0004 (1-53)||(92799-92851)
[»] scaffold0107 (1 HSPs)
scaffold0107 (188-234)||(43206-43251)
[»] scaffold0018 (1 HSPs)
scaffold0018 (1-53)||(192264-192316)


Alignment Details
Target: chr6 (Bit Score: 172; Significance: 3e-92; HSPs: 25)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 84 - 337
Target Start/End: Original strand, 10083213 - 10083467
Alignment:
Q  84 ttatatgcacaaacgtacatgcttagaattatatgcaatacaatggacaaaatgagatttccctnnnnnnnnnnnnnnnnnnnnn-tgagatgttagaat 182  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                      |||||||||| |||    
T  10083213 ttatatgcacaaacgtacatgcttagaattatatgcaatacaatggacaaaatgagatttccctaaaaaaaataaaaggaaaaaaatgagatgttaaaat 10083312  T
Q  183 aacaactcaactcttaatcgataaaagcttctttcagcttaattcaaactaataaatgaacttatatttgtgaatgatgtcatgaaactaatcaagataa 282  Q
    |||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10083313 aacatcttaactcttaatcgataaaagcttctttcagcttaattcaaactaataaatgaacttatatttgtgaatgatgtcatgaaactaatcaagataa 10083412  T
Q  283 tgtgaaaagttaatcaattaataaacacaagatgtgaacaaattaatcaaggtat 337  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10083413 tgtgaaaagttaatcaattaataaacacaagatgtgaacaaattaatcaaggtat 10083467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 184 - 247
Target Start/End: Original strand, 10095691 - 10095754
Alignment:
Q  184 acaactcaactcttaatcgataaaagcttctttcagcttaattcaaactaataaatgaacttat 247  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10095691 acaactcaactcttaatcgataaaagcttctttcagcttaattcaaactaataaatgaacttat 10095754  T

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Target: chr6; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 169 - 247
Target Start/End: Original strand, 10079008 - 10079086
Alignment:
Q  169 tgagatgttagaataacaactcaactcttaatcgataaaagcttctttcagcttaattcaaactaataaatgaacttat 247  Q
    |||||||||| ||  |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  10079008 tgagatgttaaaagtacaactcaactcttaatcgataaaagcttctttcagtttaattcaaactaataaatgaacttat 10079086  T

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Target: chr6; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 266 - 333
Target Start/End: Original strand, 10079196 - 10079263
Alignment:
Q  266 gaaactaatcaagataatgtgaaaagttaatcaattaataaacacaagatgtgaacaaattaatcaag 333  Q
    ||||||||| |||||||||||||||||||||||||||||||| | |||||||||||||||||||||||    
T  10079196 gaaactaataaagataatgtgaaaagttaatcaattaataaatagaagatgtgaacaaattaatcaag 10079263  T

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Target: chr6; HSP #5
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 266 - 330
Target Start/End: Original strand, 10077529 - 10077593
Alignment:
Q  266 gaaactaatcaagataatgtgaaaagttaatcaattaataaacacaagatgtgaacaaattaatc 330  Q
    |||||||||||| ||||||||||||||||||| ||||||||||| |||||| |||||||||||||    
T  10077529 gaaactaatcaaaataatgtgaaaagttaatcgattaataaacagaagatgcgaacaaattaatc 10077593  T

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Target: chr6; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 409 - 453
Target Start/End: Original strand, 10083539 - 10083583
Alignment:
Q  409 ttcaacaatctaagagaaataacaagatatatgtttgtctgatgt 453  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  10083539 ttcaacaatctaagagaaataacaagatatatgtttgtctgatgt 10083583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 184 - 234
Target Start/End: Complemental strand, 16015209 - 16015159
Alignment:
Q  184 acaactcaactcttaatcgataaaagcttctttcagcttaattcaaactaa 234  Q
    ||||||||| |||||||||| |||||||||||||||||||| |||||||||    
T  16015209 acaactcaattcttaatcgaaaaaagcttctttcagcttaactcaaactaa 16015159  T

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Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 409 - 453
Target Start/End: Original strand, 10095979 - 10096023
Alignment:
Q  409 ttcaacaatctaagagaaataacaagatatatgtttgtctgatgt 453  Q
    |||||||||||||||||| ||| ||||||||||||||||||||||    
T  10095979 ttcaacaatctaagagaattaataagatatatgtttgtctgatgt 10096023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 269 - 333
Target Start/End: Original strand, 18344952 - 18345016
Alignment:
Q  269 actaatcaagataatgtgaaaagttaatcaattaataaacacaagatgtgaacaaattaatcaag 333  Q
    ||||||| |||||| ||||||| ||||||||||||  |||| || ||||||||||||||||||||    
T  18344952 actaatctagataacgtgaaaaattaatcaattaaagaacagaaaatgtgaacaaattaatcaag 18345016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 2153902 - 2153955
Alignment:
Q  1 taattacactaaattatgtaatttccttaaattattatccgtgtcggcgtgtcg 54  Q
    ||||||||||||||||| | |||| ||||||||||| | |||||||||||||||    
T  2153902 taattacactaaattatatcattttcttaaattattgttcgtgtcggcgtgtcg 2153955  T

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Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 3 - 52
Target Start/End: Complemental strand, 6389785 - 6389736
Alignment:
Q  3 attacactaaattatgtaatttccttaaattattatccgtgtcggcgtgt 52  Q
    ||||||||||||||| | |||| || ||||||||||||||||||||||||    
T  6389785 attacactaaattatatcattttctcaaattattatccgtgtcggcgtgt 6389736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 9658923 - 9658871
Alignment:
Q  1 taattacactaaattatgtaatttccttaaattattatccgtgtcggcgtgtc 53  Q
    |||||||||| |||||||| |||| |||||||||||| | |||||||||||||    
T  9658923 taattacactgaattatgtgattttcttaaattattagcggtgtcggcgtgtc 9658871  T

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Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 187 - 234
Target Start/End: Original strand, 18344804 - 18344851
Alignment:
Q  187 actcaactcttaatcgataaaagcttctttcagcttaattcaaactaa 234  Q
    |||||| |||||||||| ||||| |||||||||||||| |||||||||    
T  18344804 actcaattcttaatcgaaaaaagtttctttcagcttaactcaaactaa 18344851  T

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Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 213 - 247
Target Start/End: Original strand, 10076591 - 10076625
Alignment:
Q  213 ctttcagcttaattcaaactaataaatgaacttat 247  Q
    |||||||||||||||||||||||||||||| ||||    
T  10076591 ctttcagcttaattcaaactaataaatgaagttat 10076625  T

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Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 7625166 - 7625113
Alignment:
Q  1 taattacactaaattatgtaatttccttaaattattatccgtgtcggcgtgtcg 54  Q
    |||||| |||||||||| | |||| || |||||||||||||||||| |||||||    
T  7625166 taattatactaaattatatcattttctcaaattattatccgtgtcgacgtgtcg 7625113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 5732525 - 5732577
Alignment:
Q  1 taattacactaaattatgtaatttccttaaattattatccgtgtcggcgtgtc 53  Q
    ||||||||||||| ||||| |||| || ||||||||| | |||||||||||||    
T  5732525 taattacactaaaatatgtgattttctcaaattattaacggtgtcggcgtgtc 5732577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 7977845 - 7977897
Alignment:
Q  1 taattacactaaattatgtaatttccttaaattattatccgtgtcggcgtgtc 53  Q
    |||||||||| |||||||||||||  | ||||||||| | |||||||||||||    
T  7977845 taattacactgaattatgtaattttttcaaattattagctgtgtcggcgtgtc 7977897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 105 - 141
Target Start/End: Original strand, 10078977 - 10079013
Alignment:
Q  105 cttagaattatatgcaatacaatggacaaaatgagat 141  Q
    |||| ||||||||||||||||||||| ||||||||||    
T  10078977 cttaaaattatatgcaatacaatggaaaaaatgagat 10079013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 409 - 453
Target Start/End: Original strand, 10079326 - 10079370
Alignment:
Q  409 ttcaacaatctaagagaaataacaagatatatgtttgtctgatgt 453  Q
    |||||||||||||||||| | | ||||||||||||||||| ||||    
T  10079326 ttcaacaatctaagagaattgaaaagatatatgtttgtctaatgt 10079370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 273 - 309
Target Start/End: Complemental strand, 10266470 - 10266434
Alignment:
Q  273 atcaagataatgtgaaaagttaatcaattaataaaca 309  Q
    |||||||||||||||||| |||||| |||||||||||    
T  10266470 atcaagataatgtgaaaatttaatccattaataaaca 10266434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 12696368 - 12696316
Alignment:
Q  1 taattacactaaattatgtaatttccttaaattattatccgtgtcggcgtgtc 53  Q
    |||||||||| |||||||||||||  | ||||||||| | |||||||||||||    
T  12696368 taattacactgaattatgtaattttttcaaattattagctgtgtcggcgtgtc 12696316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 17841604 - 17841656
Alignment:
Q  1 taattacactaaattatgtaatttccttaaattattatccgtgtcggcgtgtc 53  Q
    ||||||||||||||||||| ||||  | ||||||||| | |||||||||||||    
T  17841604 taattacactaaattatgtgattttttcaaattattagctgtgtcggcgtgtc 17841656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 18252766 - 18252818
Alignment:
Q  1 taattacactaaattatgtaatttccttaaattattatccgtgtcggcgtgtc 53  Q
    ||||||||||||||||||| ||||  ||||||||||||| || |||| |||||    
T  18252766 taattacactaaattatgtcatttttttaaattattatcggtatcggagtgtc 18252818  T

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Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 19040396 - 19040344
Alignment:
Q  1 taattacactaaattatgtaatttccttaaattattatccgtgtcggcgtgtc 53  Q
    |||||||||| |||||||| |||| || ||||||||| | |||||||||||||    
T  19040396 taattacactgaattatgtgattttctcaaattattagcggtgtcggcgtgtc 19040344  T

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Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 25038086 - 25038122
Alignment:
Q  1 taattacactaaattatgtaatttccttaaattatta 37  Q
    |||||||||||||||||||||||| || |||||||||    
T  25038086 taattacactaaattatgtaattttctcaaattatta 25038122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 24343551 - 24343498
Alignment:
Q  1 taattacactaaattatgtaatttccttaaattattatccgtgtcggcgtgtcg 54  Q
    |||||||||| ||||||||||||| || ||||||||||||||||||||||||||    
T  24343551 taattacactgaattatgtaattttctcaaattattatccgtgtcggcgtgtcg 24343498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 269 - 333
Target Start/End: Original strand, 13345312 - 13345376
Alignment:
Q  269 actaatcaagataatgtgaaaagttaatcaattaataaacacaagatgtgaacaaattaatcaag 333  Q
    ||||||| |||||| |||||||  ||||||||||| ||||| || ||||||||||||||||||||    
T  13345312 actaatctagataacgtgaaaaagtaatcaattaaaaaacagaaaatgtgaacaaattaatcaag 13345376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 3 - 53
Target Start/End: Original strand, 20743295 - 20743345
Alignment:
Q  3 attacactaaattatgtaatttccttaaattattatccgtgtcggcgtgtc 53  Q
    |||||||| |||||||| |||| || |||||||||||||||||||||||||    
T  20743295 attacactgaattatgtcattttctcaaattattatccgtgtcggcgtgtc 20743345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 269 - 333
Target Start/End: Original strand, 35857283 - 35857347
Alignment:
Q  269 actaatcaagataatgtgaaaagttaatcaattaataaacacaagatgtgaacaaattaatcaag 333  Q
    ||||||| |||||| |||||||  ||||||||||| ||||| || ||| ||||||||||||||||    
T  35857283 actaatctagataacgtgaaaaagtaatcaattaaaaaacagaaaatgggaacaaattaatcaag 35857347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 187 - 234
Target Start/End: Complemental strand, 617761 - 617714
Alignment:
Q  187 actcaactcttaatcgataaaagcttctttcagcttaattcaaactaa 234  Q
    |||||| |||||||||| ||||| |||||||||||||| |||||||||    
T  617761 actcaattcttaatcgaaaaaagtttctttcagcttaactcaaactaa 617714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 187 - 234
Target Start/End: Original strand, 13345165 - 13345211
Alignment:
Q  187 actcaactcttaatcgataaaagcttctttcagcttaattcaaactaa 234  Q
    |||||| |||||||||| |||||||||||||||||||| |||||||||    
T  13345165 actcaattcttaatcga-aaaagcttctttcagcttaactcaaactaa 13345211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 187 - 234
Target Start/End: Original strand, 31921765 - 31921812
Alignment:
Q  187 actcaactcttaatcgataaaagcttctttcagcttaattcaaactaa 234  Q
    |||||| |||||||||| ||||| |||||||||||||| |||||||||    
T  31921765 actcaattcttaatcgaaaaaagtttctttcagcttaactcaaactaa 31921812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 13134494 - 13134444
Alignment:
Q  1 taattacactaaattatgtaatttccttaaattattatccgtgtcggcgtg 51  Q
    ||||||||||||||||||| |||| |||||||||| | | |||||||||||    
T  13134494 taattacactaaattatgtgattttcttaaattataagcagtgtcggcgtg 13134444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 32910595 - 32910549
Alignment:
Q  1 taattacactaaattatgtaatttccttaaattattatccgtgtcgg 47  Q
    |||||||||| |||||||| |||| || |||||||||||||||||||    
T  32910595 taattacactgaattatgtcattttctcaaattattatccgtgtcgg 32910549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 188 - 234
Target Start/End: Original strand, 49711401 - 49711446
Alignment:
Q  188 ctcaactcttaatcgataaaagcttctttcagcttaattcaaactaa 234  Q
    ||||| |||||||||| |||||||||||||||||||| |||||||||    
T  49711401 ctcaattcttaatcga-aaaagcttctttcagcttaactcaaactaa 49711446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 4 - 53
Target Start/End: Original strand, 34515892 - 34515941
Alignment:
Q  4 ttacactaaattatgtaatttccttaaattattatccgtgtcggcgtgtc 53  Q
    ||||||| |||||||| |||| ||| ||||||||||||||||| ||||||    
T  34515892 ttacactgaattatgtcattttcttgaattattatccgtgtcgacgtgtc 34515941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 269 - 333
Target Start/End: Complemental strand, 617613 - 617549
Alignment:
Q  269 actaatcaagataatgtgaaaagttaatcaattaataaacacaagatgtgaacaaattaatcaag 333  Q
    ||||||| |||||| ||||||| ||||||||||||  || | || |||||| |||||||||||||    
T  617613 actaatctagataacgtgaaaaattaatcaattaaagaatagaaaatgtgatcaaattaatcaag 617549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 2361990 - 2362042
Alignment:
Q  1 taattacactaaattatgtaatttccttaaattattatccgtgtcggcgtgtc 53  Q
    ||||||||||||||||||||||||  | ||||||||| | ||||||| |||||    
T  2361990 taattacactaaattatgtaattttttcaaattattagctgtgtcggtgtgtc 2362042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 6 - 54
Target Start/End: Complemental strand, 7012105 - 7012057
Alignment:
Q  6 acactaaattatgtaatttccttaaattattatccgtgtcggcgtgtcg 54  Q
    ||||| |||||||| |||| || ||||||||||| ||||||||||||||    
T  7012105 acactgaattatgtcattttctcaaattattatcggtgtcggcgtgtcg 7012057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 269 - 333
Target Start/End: Original strand, 27882460 - 27882524
Alignment:
Q  269 actaatcaagataatgtgaaaagttaatcaattaataaacacaagatgtgaacaaattaatcaag 333  Q
    ||||||| |||||| |||||||| ||||||||||| ||||| || ||||||||||||||||||||    
T  27882460 actaatctagataacgtgaaaaggtaatcaattaaaaaacaaaaaatgtgaacaaattaatcaag 27882524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 27144507 - 27144455
Alignment:
Q  1 taattacactaaattatgtaatttccttaaattattatccgtgtcggcgtgtc 53  Q
    ||||||||||||||||||| ||||||| ||||||||| | |||||||||||||    
T  27144507 taattacactaaattatgtgatttcctcaaattattagcggtgtcggcgtgtc 27144455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 269 - 333
Target Start/End: Original strand, 37374310 - 37374374
Alignment:
Q  269 actaatcaagataatgtgaaaagttaatcaattaataaacacaagatgtgaacaaattaatcaag 333  Q
    ||||||| |||||| |||||||  ||||||||||| ||||| || ||||||||||||||||||||    
T  37374310 actaatctagataacgtgaaaaagtaatcaattaaaaaacagaaaatgtgaacaaattaatcaag 37374374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 187 - 234
Target Start/End: Complemental strand, 14190981 - 14190934
Alignment:
Q  187 actcaactcttaatcgataaaagcttctttcagcttaattcaaactaa 234  Q
    |||||| |||||||||| |||||||||||||||||||| |||||||||    
T  14190981 actcaattcttaatcgaaaaaagcttctttcagcttaactcaaactaa 14190934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 271 - 333
Target Start/End: Complemental strand, 14190831 - 14190769
Alignment:
Q  271 taatcaagataatgtgaaaagttaatcaattaataaacacaagatgtgaacaaattaatcaag 333  Q
    ||||| |||||| ||||||| ||||||||||||  |||| || ||||||||||||||||||||    
T  14190831 taatctagataacgtgaaaaattaatcaattaaagaacagaaaatgtgaacaaattaatcaag 14190769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 3 - 53
Target Start/End: Complemental strand, 42469263 - 42469213
Alignment:
Q  3 attacactaaattatgtaatttccttaaattattatccgtgtcggcgtgtc 53  Q
    ||||||||||| ||||| |||| || |||||||||||||||||||||||||    
T  42469263 attacactaaaatatgtcattttctcaaattattatccgtgtcggcgtgtc 42469213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 187 - 234
Target Start/End: Original strand, 37374163 - 37374209
Alignment:
Q  187 actcaactcttaatcgataaaagcttctttcagcttaattcaaactaa 234  Q
    |||||| |||||||||| |||||||||||||||||||| |||||||||    
T  37374163 actcaattcttaatcga-aaaagcttctttcagcttaactcaaactaa 37374209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 3 - 45
Target Start/End: Complemental strand, 18162097 - 18162055
Alignment:
Q  3 attacactaaattatgtaatttccttaaattattatccgtgtc 45  Q
    |||||||| |||||||| |||| ||||||||||||||||||||    
T  18162097 attacactgaattatgtcattttcttaaattattatccgtgtc 18162055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 27932279 - 27932229
Alignment:
Q  1 taattacactaaattatgtaatttccttaaattattatccgtgtcggcgtg 51  Q
    |||||||||| ||||||||||||| || ||||||||| | |||||||||||    
T  27932279 taattacactgaattatgtaattttctcaaattattagcggtgtcggcgtg 27932229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 3 - 47
Target Start/End: Original strand, 2577197 - 2577241
Alignment:
Q  3 attacactaaattatgtaatttccttaaattattatccgtgtcgg 47  Q
    ||||||||||||||||| |||| || ||||||||||| |||||||    
T  2577197 attacactaaattatgtcattttctcaaattattatcggtgtcgg 2577241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 269 - 333
Target Start/End: Complemental strand, 8427428 - 8427364
Alignment:
Q  269 actaatcaagataatgtgaaaagttaatcaattaataaacacaagatgtgaacaaattaatcaag 333  Q
    ||||||| |||||| |||||||  ||||||||||| ||| | || ||| ||||||||||||||||    
T  8427428 actaatctagataacgtgaaaaagtaatcaattaaaaaatagaaaatgggaacaaattaatcaag 8427364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 14674313 - 14674261
Alignment:
Q  1 taattacactaaattatgtaatttccttaaattattatccgtgtcggcgtgtc 53  Q
    ||||||||||||||||||| ||||  | ||||||||| | |||||||||||||    
T  14674313 taattacactaaattatgtgattttttcaaattattagctgtgtcggcgtgtc 14674261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 22013458 - 22013406
Alignment:
Q  1 taattacactaaattatgtaatttccttaaattattatccgtgtcggcgtgtc 53  Q
    ||||||||||||||||||||||||    ||||||||| | |||||||||||||    
T  22013458 taattacactaaattatgtaatttttccaaattattagctgtgtcggcgtgtc 22013406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 28588689 - 28588741
Alignment:
Q  1 taattacactaaattatgtaatttccttaaattattatccgtgtcggcgtgtc 53  Q
    |||||||||| |||||||| |||| || ||||||||| | |||||||||||||    
T  28588689 taattacactgaattatgtgattttctcaaattattaccggtgtcggcgtgtc 28588741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 33178069 - 33178017
Alignment:
Q  1 taattacactaaattatgtaatttccttaaattattatccgtgtcggcgtgtc 53  Q
    ||||||||||||||||||| ||||  |||||||||||   |||||||||||||    
T  33178069 taattacactaaattatgtgatttttttaaattattagttgtgtcggcgtgtc 33178017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 36838587 - 36838551
Alignment:
Q  1 taattacactaaattatgtaatttccttaaattatta 37  Q
    |||||||||||||||||||||||| || |||||||||    
T  36838587 taattacactaaattatgtaattttctcaaattatta 36838551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 19574022 - 19573968
Alignment:
Q  1 taattacactaaattatgtaatttccttaaattattatccgtgtcggcgtgtcgt 55  Q
    |||||||||| |||||||| |||| |||||||||||||| |||||||||||||||    
T  19574022 taattacactgaattatgttattttcttaaattattatcggtgtcggcgtgtcgt 19573968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 187 - 234
Target Start/End: Original strand, 35611693 - 35611740
Alignment:
Q  187 actcaactcttaatcgataaaagcttctttcagcttaattcaaactaa 234  Q
    |||||| |||||||||| |||||||||||||||||||| |||||||||    
T  35611693 actcaattcttaatcgaaaaaagcttctttcagcttaactcaaactaa 35611740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 3 - 52
Target Start/End: Complemental strand, 22085046 - 22084997
Alignment:
Q  3 attacactaaattatgtaatttccttaaattattatccgtgtcggcgtgt 52  Q
    ||||||||||||||||| |||| ||||||||||||| |||||| ||||||    
T  22085046 attacactaaattatgtcattttcttaaattattatacgtgtcagcgtgt 22084997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 269 - 333
Target Start/End: Complemental strand, 41919040 - 41918976
Alignment:
Q  269 actaatcaagataatgtgaaaagttaatcaattaataaacacaagatgtgaacaaattaatcaag 333  Q
    ||||||| |||||| |||||||  ||||||||||| ||||| || ||| ||||||||||||||||    
T  41919040 actaatctagataacgtgaaaaagtaatcaattaaaaaacagaaaatgggaacaaattaatcaag 41918976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 187 - 234
Target Start/End: Original strand, 27194519 - 27194566
Alignment:
Q  187 actcaactcttaatcgataaaagcttctttcagcttaattcaaactaa 234  Q
    |||||| |||||||||| |||||| ||||||||||||| |||||||||    
T  27194519 actcaattcttaatcgaaaaaagcatctttcagcttaactcaaactaa 27194566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 187 - 234
Target Start/End: Original strand, 27844333 - 27844380
Alignment:
Q  187 actcaactcttaatcgataaaagcttctttcagcttaattcaaactaa 234  Q
    |||||| |||||||||| |||||| ||||||||||||| |||||||||    
T  27844333 actcaattcttaatcgaaaaaagcatctttcagcttaactcaaactaa 27844380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 279 - 333
Target Start/End: Original strand, 35611851 - 35611905
Alignment:
Q  279 ataatgtgaaaagttaatcaattaataaacacaagatgtgaacaaattaatcaag 333  Q
    |||| ||||||| ||||||||||||  |||| || ||||||||||||||||||||    
T  35611851 ataacgtgaaaaattaatcaattaaagaacagaaaatgtgaacaaattaatcaag 35611905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 188 - 234
Target Start/End: Complemental strand, 39441249 - 39441203
Alignment:
Q  188 ctcaactcttaatcgataaaagcttctttcagcttaattcaaactaa 234  Q
    ||||| |||||||||| |||||||||||||||||| | |||||||||    
T  39441249 ctcaattcttaatcgaaaaaagcttctttcagctttactcaaactaa 39441203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 187 - 224
Target Start/End: Complemental strand, 19817108 - 19817071
Alignment:
Q  187 actcaactcttaatcgataaaagcttctttcagcttaa 224  Q
    |||||| |||||||||| ||||||||||||||||||||    
T  19817108 actcaattcttaatcgaaaaaagcttctttcagcttaa 19817071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 21616806 - 21616754
Alignment:
Q  1 taattacactaaattatgtaatttccttaaattattatccgtgtcggcgtgtc 53  Q
    |||||||||| |||||||| |||| || ||||||||| | |||||||||||||    
T  21616806 taattacactgaattatgtgattttctcaaattattagcggtgtcggcgtgtc 21616754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 21782833 - 21782885
Alignment:
Q  1 taattacactaaattatgtaatttccttaaattattatccgtgtcggcgtgtc 53  Q
    |||||||||| |||||||| |||| || ||||||||| | |||||||||||||    
T  21782833 taattacactgaattatgtgattttctcaaattattagcagtgtcggcgtgtc 21782885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 269 - 333
Target Start/End: Original strand, 27194667 - 27194731
Alignment:
Q  269 actaatcaagataatgtgaaaagttaatcaattaataaacacaagatgtgaacaaattaatcaag 333  Q
    ||||||| |||||| |||||||   ||||||||||  |||| || ||||||||||||||||||||    
T  27194667 actaatctagataacgtgaaaaaagaatcaattaaagaacagaaaatgtgaacaaattaatcaag 27194731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 269 - 333
Target Start/End: Original strand, 27844481 - 27844545
Alignment:
Q  269 actaatcaagataatgtgaaaagttaatcaattaataaacacaagatgtgaacaaattaatcaag 333  Q
    ||||||| |||||| |||||||   ||||||||||  |||| || ||||||||||||||||||||    
T  27844481 actaatctagataacgtgaaaaaaaaatcaattaaagaacagaaaatgtgaacaaattaatcaag 27844545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 30404865 - 30404917
Alignment:
Q  1 taattacactaaattatgtaatttccttaaattattatccgtgtcggcgtgtc 53  Q
    |||||||||| |||||||| ||||  | ||||||||| |||||||||||||||    
T  30404865 taattacactgaattatgtgattttttcaaattattaaccgtgtcggcgtgtc 30404917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 277 - 333
Target Start/End: Complemental strand, 39441094 - 39441038
Alignment:
Q  277 agataatgtgaaaagttaatcaattaataaacacaagatgtgaacaaattaatcaag 333  Q
    |||||| ||||||| |||||||| |||  |||| || ||||||||||||||||||||    
T  39441094 agataacgtgaaaaattaatcaaataaagaacagaaaatgtgaacaaattaatcaag 39441038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 269 - 333
Target Start/End: Original strand, 7823207 - 7823271
Alignment:
Q  269 actaatcaagataatgtgaaaagttaatcaattaataaacacaagatgtgaacaaattaatcaag 333  Q
    ||||||| |||||| |||||||  ||||||||||| ||||| || ||||||||||||||||||||    
T  7823207 actaatctagataacgtgaaaaagtaatcaattaaaaaacagaaaatgtgaacaaattaatcaag 7823271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 39954294 - 39954347
Alignment:
Q  1 taattacactaaattatgtaatttccttaaattattatccgtgtcggcgtgtcg 54  Q
    ||||||||||||||||||| |||| || ||||||||| | ||||||||||||||    
T  39954294 taattacactaaattatgtgattttctcaaattattagcggtgtcggcgtgtcg 39954347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 24669477 - 24669425
Alignment:
Q  1 taattacactaaattatgtaatttccttaaattattatccgtgtcggcgtgtc 53  Q
    |||||||||| |||||||||||||||| ||||||||| | ||||| |||||||    
T  24669477 taattacactgaattatgtaatttcctcaaattattaacggtgtcagcgtgtc 24669425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 269 - 333
Target Start/End: Complemental strand, 25217408 - 25217344
Alignment:
Q  269 actaatcaagataatgtgaaaagttaatcaattaataaacacaagatgtgaacaaattaatcaag 333  Q
    ||||||| |||||| |||||||  ||||||||||| ||||| || ||| ||||||||||||||||    
T  25217408 actaatctagataacgtgaaaaagtaatcaattaaaaaacagaaaatgggaacaaattaatcaag 25217344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 269 - 333
Target Start/End: Original strand, 30326842 - 30326906
Alignment:
Q  269 actaatcaagataatgtgaaaagttaatcaattaataaacacaagatgtgaacaaattaatcaag 333  Q
    ||||||| |||||| |||||||  ||||||||||| ||||| ||  |||||||||||||||||||    
T  30326842 actaatctagataacgtgaaaaagtaatcaattaaaaaacagaaactgtgaacaaattaatcaag 30326906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 44067560 - 44067508
Alignment:
Q  1 taattacactaaattatgtaatttccttaaattattatccgtgtcggcgtgtc 53  Q
    ||||||||||  ||||||| |||| || |||||||||||||||||||||||||    
T  44067560 taattacactgtattatgtcattttctcaaattattatccgtgtcggcgtgtc 44067508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 187 - 234
Target Start/End: Original strand, 7823060 - 7823106
Alignment:
Q  187 actcaactcttaatcgataaaagcttctttcagcttaattcaaactaa 234  Q
    |||||| |||||||||| |||||||||||||||||||| |||||||||    
T  7823060 actcaattcttaatcga-aaaagcttctttcagcttaactcaaactaa 7823106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 187 - 234
Target Start/End: Complemental strand, 25208037 - 25207991
Alignment:
Q  187 actcaactcttaatcgataaaagcttctttcagcttaattcaaactaa 234  Q
    |||||| |||||||||| |||||||||||||||||||| |||||||||    
T  25208037 actcaattcttaatcga-aaaagcttctttcagcttaactcaaactaa 25207991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 187 - 234
Target Start/End: Original strand, 30326695 - 30326741
Alignment:
Q  187 actcaactcttaatcgataaaagcttctttcagcttaattcaaactaa 234  Q
    |||||| |||||||||| |||||||||||||||||||| |||||||||    
T  30326695 actcaattcttaatcga-aaaagcttctttcagcttaactcaaactaa 30326741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 187 - 234
Target Start/End: Complemental strand, 33861303 - 33861256
Alignment:
Q  187 actcaactcttaatcgataaaagcttctttcagcttaattcaaactaa 234  Q
    |||||| |||||||||| ||||| |||||||||||||| |||||||||    
T  33861303 actcaattcttaatcgaaaaaagtttctttcagcttaactcaaactaa 33861256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 4786353 - 4786405
Alignment:
Q  1 taattacactaaattatgtaatttccttaaattattatccgtgtcggcgtgtc 53  Q
    |||||||||| |||||||| |||| ||||||||||||   |||||||||||||    
T  4786353 taattacactgaattatgtgattttcttaaattattaatggtgtcggcgtgtc 4786405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 13844611 - 13844663
Alignment:
Q  1 taattacactaaattatgtaatttccttaaattattatccgtgtcggcgtgtc 53  Q
    |||||||||| |||||||| |||| || ||||||||| | |||||||||||||    
T  13844611 taattacactcaattatgtgattttctcaaattattagcagtgtcggcgtgtc 13844663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 20873113 - 20873061
Alignment:
Q  1 taattacactaaattatgtaatttccttaaattattatccgtgtcggcgtgtc 53  Q
    ||||||||||||||||||| ||||  | |||||||||||  ||||||||||||    
T  20873113 taattacactaaattatgtgattttttcaaattattatctatgtcggcgtgtc 20873061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 22596038 - 22595986
Alignment:
Q  1 taattacactaaattatgtaatttccttaaattattatccgtgtcggcgtgtc 53  Q
    |||||||||| |||||||| ||||  ||||||||||| | |||||||||||||    
T  22596038 taattacactgaattatgttatttttttaaattattagctgtgtcggcgtgtc 22595986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 269 - 333
Target Start/End: Original strand, 7038096 - 7038160
Alignment:
Q  269 actaatcaagataatgtgaaaagttaatcaattaataaacacaagatgtgaacaaattaatcaag 333  Q
    ||||||| |||||| |||||||  ||||||||||| ||||| || ||||||||||||||||||||    
T  7038096 actaatctagataacgtgaaaaagtaatcaattaaaaaacagaaaatgtgaacaaattaatcaag 7038160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 269 - 333
Target Start/End: Complemental strand, 12784845 - 12784781
Alignment:
Q  269 actaatcaagataatgtgaaaagttaatcaattaataaacacaagatgtgaacaaattaatcaag 333  Q
    ||||||| |||||| |||||||  ||||||||||| ||||| || ||||||||||||||||||||    
T  12784845 actaatctagataacgtgaaaaagtaatcaattaaaaaacagaaaatgtgaacaaattaatcaag 12784781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 3554521 - 3554573
Alignment:
Q  1 taattacactaaattatgtaatttccttaaattattatccgtgtcggcgtgtc 53  Q
    |||||||| ||||||||||||||| |||||||||| ||  |||||||||||||    
T  3554521 taattacattaaattatgtaattttcttaaattatcattggtgtcggcgtgtc 3554573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 5236030 - 5235978
Alignment:
Q  1 taattacactaaattatgtaatttccttaaattattatccgtgtcggcgtgtc 53  Q
    ||||||||||||||||| |||||| |||||||||||| | |||||| ||||||    
T  5236030 taattacactaaattatataattttcttaaattattagcggtgtcgacgtgtc 5235978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 8160460 - 8160424
Alignment:
Q  1 taattacactaaattatgtaatttccttaaattatta 37  Q
    |||||||||||||||||||||||| ||||||||||||    
T  8160460 taattacactaaattatgtaattttcttaaattatta 8160424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 269 - 333
Target Start/End: Complemental strand, 12779991 - 12779927
Alignment:
Q  269 actaatcaagataatgtgaaaagttaatcaattaataaacacaagatgtgaacaaattaatcaag 333  Q
    ||||||| |||||| |||||||  ||||||||||| ||||| || ||| ||||||||||||||||    
T  12779991 actaatctagataacgtgaaaaagtaatcaattaaaaaacagaaaatgggaacaaattaatcaag 12779927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 43250037 - 43249985
Alignment:
Q  1 taattacactaaattatgtaatttccttaaattattatccgtgtcggcgtgtc 53  Q
    ||||||||||  ||||||| |||| || |||||||||||||||||||||||||    
T  43250037 taattacactgtattatgtcattttctcaaattattatccgtgtcggcgtgtc 43249985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 3 - 54
Target Start/End: Original strand, 4017811 - 4017862
Alignment:
Q  3 attacactaaattatgtaatttccttaaattattatccgtgtcggcgtgtcg 54  Q
    ||||||||||||||| |  ||| || ||||||||||||||||||||||||||    
T  4017811 attacactaaattatatcgttttctcaaattattatccgtgtcggcgtgtcg 4017862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 187 - 234
Target Start/End: Complemental strand, 12784992 - 12784946
Alignment:
Q  187 actcaactcttaatcgataaaagcttctttcagcttaattcaaactaa 234  Q
    |||||| |||||||||| |||||||||||||||||||| |||||||||    
T  12784992 actcaattcttaatcga-aaaagcttctttcagcttaactcaaactaa 12784946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 188 - 234
Target Start/End: Complemental strand, 9000133 - 9000088
Alignment:
Q  188 ctcaactcttaatcgataaaagcttctttcagcttaattcaaactaa 234  Q
    ||||| |||||||||| |||||||||||||||||||| |||||||||    
T  9000133 ctcaattcttaatcga-aaaagcttctttcagcttaactcaaactaa 9000088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 27093428 - 27093474
Alignment:
Q  1 taattacactaaattatgtaatttccttaaattattatccgtgtcgg 47  Q
    ||||||||||||||||||| |||| |||||||||||| | |||||||    
T  27093428 taattacactaaattatgtgattttcttaaattattagcggtgtcgg 27093474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 27184873 - 27184827
Alignment:
Q  1 taattacactaaattatgtaatttccttaaattattatccgtgtcgg 47  Q
    ||||||||||||||||||| |||| |||||||||||| | |||||||    
T  27184873 taattacactaaattatgtgattttcttaaattattagcggtgtcgg 27184827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 13 - 55
Target Start/End: Original strand, 38804582 - 38804624
Alignment:
Q  13 attatgtaatttccttaaattattatccgtgtcggcgtgtcgt 55  Q
    ||||||| |||| || |||||||||||||||||||||||||||    
T  38804582 attatgtcattttctgaaattattatccgtgtcggcgtgtcgt 38804624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 13770735 - 13770686
Alignment:
Q  1 taattacactaaattatgtaatttccttaaattattatccgtgtcggcgt 50  Q
    |||||||||| |||||||||||||  ||||||||||| | ||||||||||    
T  13770735 taattacactgaattatgtaatttttttaaattattagctgtgtcggcgt 13770686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 27732254 - 27732290
Alignment:
Q  1 taattacactaaattatgtaatttccttaaattatta 37  Q
    |||||||||| ||||||||||||| ||||||||||||    
T  27732254 taattacactgaattatgtaattttcttaaattatta 27732290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 27945085 - 27945033
Alignment:
Q  1 taattacactaaattatgtaatttccttaaattattatccgtgtcggcgtgtc 53  Q
    |||||||||| ||||||||||||| || |||||||||   |||||||||||||    
T  27945085 taattacactgaattatgtaattttctcaaattattagtggtgtcggcgtgtc 27945033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 269 - 333
Target Start/End: Original strand, 52919403 - 52919467
Alignment:
Q  269 actaatcaagataatgtgaaaagttaatcaattaataaacacaagatgtgaacaaattaatcaag 333  Q
    ||||||| |||||| |||||||  ||||||||||| ||||| || ||||||||||||||||||||    
T  52919403 actaatctagataacgtgaaaaagtaatcaattaaaaaacagaaaatgtgaacaaattaatcaag 52919467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 15864875 - 15864823
Alignment:
Q  3 attacactaaattatgtaatttccttaaattattatccgtgtcggcgtgtcgt 55  Q
    ||||||||||||||| | ||||  | |||||||||||||||||||||||||||    
T  15864875 attacactaaattatatcattttttcaaattattatccgtgtcggcgtgtcgt 15864823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 24205056 - 24205108
Alignment:
Q  1 taattacactaaattatgtaatttccttaaattattatccgtgtcggcgtgtc 53  Q
    ||||||||||  ||||||| |||| || |||||||||||||||||||||||||    
T  24205056 taattacactgtattatgtcattttctcaaattattatccgtgtcggcgtgtc 24205108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 187 - 234
Target Start/End: Original strand, 34002 - 34048
Alignment:
Q  187 actcaactcttaatcgataaaagcttctttcagcttaattcaaactaa 234  Q
    |||||| |||||||||| |||||||||||||||||||| |||||||||    
T  34002 actcaattcttaatcga-aaaagcttctttcagcttaactcaaactaa 34048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 187 - 234
Target Start/End: Complemental strand, 10967772 - 10967726
Alignment:
Q  187 actcaactcttaatcgataaaagcttctttcagcttaattcaaactaa 234  Q
    |||||| |||||||||| |||||||||||||||||||| |||||||||    
T  10967772 actcaattcttaatcga-aaaagcttctttcagcttaactcaaactaa 10967726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 187 - 234
Target Start/End: Complemental strand, 41763285 - 41763238
Alignment:
Q  187 actcaactcttaatcgataaaagcttctttcagcttaattcaaactaa 234  Q
    |||||| |||||||||| ||||| |||||||||||||| |||||||||    
T  41763285 actcaattcttaatcgaaaaaagtttctttcagcttaactcaaactaa 41763238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 187 - 234
Target Start/End: Original strand, 52919256 - 52919302
Alignment:
Q  187 actcaactcttaatcgataaaagcttctttcagcttaattcaaactaa 234  Q
    |||||| |||||||||| |||||||||||||||||||| |||||||||    
T  52919256 actcaattcttaatcga-aaaagcttctttcagcttaactcaaactaa 52919302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 8903475 - 8903422
Alignment:
Q  1 taattacactaaattatgtaatttccttaaattattatccgtgtcggcgtgtcgt 55  Q
    |||||||||||||| |||| |||| || ||| |||||||||||||||||||||||    
T  8903475 taattacactaaat-atgtcattttctcaaaatattatccgtgtcggcgtgtcgt 8903422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 3 - 53
Target Start/End: Complemental strand, 25074831 - 25074781
Alignment:
Q  3 attacactaaattatgtaatttccttaaattattatccgtgtcggcgtgtc 53  Q
    |||||||| |||||||| |||| || ||||||||||| |||||||||||||    
T  25074831 attacactcaattatgtcattttctcaaattattatcggtgtcggcgtgtc 25074781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 10268501 - 10268553
Alignment:
Q  1 taattacactaaattatgtaatttccttaaattattatccgtgtcggcgtgtc 53  Q
    ||||||||||||||||||| ||||  | ||||||||| | |||||||||||||    
T  10268501 taattacactaaattatgtgattttttcaaattattaactgtgtcggcgtgtc 10268553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 32804555 - 32804607
Alignment:
Q  1 taattacactaaattatgtaatttccttaaattattatccgtgtcggcgtgtc 53  Q
    ||||||||||||||||||| |||| || ||||||||| | |||||||| ||||    
T  32804555 taattacactaaattatgtgattttctcaaattattaacggtgtcggcatgtc 32804607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 269 - 333
Target Start/End: Complemental strand, 6309837 - 6309773
Alignment:
Q  269 actaatcaagataatgtgaaaagttaatcaattaataaacacaagatgtgaacaaattaatcaag 333  Q
    ||||||| |||||| |||||||  ||||||||||| ||||| || ||||||||||||||||||||    
T  6309837 actaatctagataacgtgaaaaagtaatcaattaaaaaacagaaaatgtgaacaaattaatcaag 6309773  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 13436502 - 13436451
Alignment:
Q  1 taattacactaaattatgtaatttccttaaattattatccgtgtcggcgtgt 52  Q
    |||||||||| |||||||| ||||||||||||||||| | ||||||||||||    
T  13436502 taattacactgaattatgtgatttccttaaattattagcagtgtcggcgtgt 13436451  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 41877485 - 41877534
Alignment:
Q  1 taattacactaaattatgtaatttccttaaattattatccgtgtcggcgt 50  Q
    |||||||||||||||||||||||| || ||||||||| | ||||||||||    
T  41877485 taattacactaaattatgtaattttctcaaattattagcggtgtcggcgt 41877534  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 269 - 333
Target Start/End: Original strand, 2331364 - 2331428
Alignment:
Q  269 actaatcaagataatgtgaaaagttaatcaattaataaacacaagatgtgaacaaattaatcaag 333  Q
    ||||||| |||||| ||||||| ||||||||||||  |||| || ||| ||||||||||||||||    
T  2331364 actaatctagataacgtgaaaaattaatcaattaaagaacataaaatgcgaacaaattaatcaag 2331428  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 269 - 333
Target Start/End: Original strand, 48234206 - 48234270
Alignment:
Q  269 actaatcaagataatgtgaaaagttaatcaattaataaacacaagatgtgaacaaattaatcaag 333  Q
    ||||||| |||||| |||||||  |||||||||||  |||| || ||||||||||||||||||||    
T  48234206 actaatctagataacgtgaaaaaataatcaattaaagaacagaaaatgtgaacaaattaatcaag 48234270  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 5376515 - 5376566
Alignment:
Q  1 taattacactaaattatgtaatttccttaaattattatccgtgtcggcgtgt 52  Q
    |||||||||| |||||||| |||| |||||||||||| | ||||||||||||    
T  5376515 taattacactgaattatgttattttcttaaattattagcggtgtcggcgtgt 5376566  T

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Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 187 - 234
Target Start/End: Original strand, 48234057 - 48234104
Alignment:
Q  187 actcaactcttaatcgataaaagcttctttcagcttaattcaaactaa 234  Q
    |||||| |||||||| | |||||||||||||||||||| |||||||||    
T  48234057 actcaattcttaatcaaaaaaagcttctttcagcttaactcaaactaa 48234104  T

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Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 3 - 45
Target Start/End: Original strand, 42004964 - 42005006
Alignment:
Q  3 attacactaaattatgtaatttccttaaattattatccgtgtc 45  Q
    ||||||||||||||||| |||| || |||||||||||||||||    
T  42004964 attacactaaattatgtcattttctcaaattattatccgtgtc 42005006  T

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Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 48415742 - 48415795
Alignment:
Q  3 attacactaaattatgtaatttccttaaa-ttattatccgtgtcggcgtgtcgt 55  Q
    ||||||||||||||| | ||||  ||||| ||||||||||||||||||||||||    
T  48415742 attacactaaattatatcatttttttaaaattattatccgtgtcggcgtgtcgt 48415795  T

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Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 12713342 - 12713378
Alignment:
Q  1 taattacactaaattatgtaatttccttaaattatta 37  Q
    ||||||||||||||||||| |||| ||||||||||||    
T  12713342 taattacactaaattatgtgattttcttaaattatta 12713378  T

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Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 12717433 - 12717469
Alignment:
Q  1 taattacactaaattatgtaatttccttaaattatta 37  Q
    ||||||||||||||||||| |||| ||||||||||||    
T  12717433 taattacactaaattatgtgattttcttaaattatta 12717469  T

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Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 34257925 - 34257977
Alignment:
Q  1 taattacactaaattatgtaatttccttaaattattatccgtgtcggcgtgtc 53  Q
    ||||||||||||||||||| ||||  ||||||||||| | |||||| ||||||    
T  34257925 taattacactaaattatgtgattttattaaattattaacggtgtcgacgtgtc 34257977  T

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Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 36878505 - 36878453
Alignment:
Q  1 taattacactaaattatgtaatttccttaaattattatccgtgtcggcgtgtc 53  Q
    |||||||||| |||||||| |||| || ||||||||| | |||||||||||||    
T  36878505 taattacactgaattatgtgattttctcaaattattagcggtgtcggcgtgtc 36878453  T

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Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 37055871 - 37055907
Alignment:
Q  1 taattacactaaattatgtaatttccttaaattatta 37  Q
    |||||||||||||||||||||||| || |||||||||    
T  37055871 taattacactaaattatgtaattttctcaaattatta 37055907  T

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Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 2 - 50
Target Start/End: Original strand, 39953162 - 39953210
Alignment:
Q  2 aattacactaaattatgtaatttccttaaattattatccgtgtcggcgt 50  Q
    |||||||||||||||||| |||| || ||||||||| | ||||||||||    
T  39953162 aattacactaaattatgtgattttctaaaattattagcggtgtcggcgt 39953210  T

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Target: scaffold0356 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: scaffold0356
Description:

Target: scaffold0356; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 269 - 333
Target Start/End: Complemental strand, 15069 - 15005
Alignment:
Q  269 actaatcaagataatgtgaaaagttaatcaattaataaacacaagatgtgaacaaattaatcaag 333  Q
    ||||||| |||||| ||||||| ||||||||||||  |||| |  ||||||||||||||||||||    
T  15069 actaatctagataacgtgaaaaattaatcaattaaagaacagataatgtgaacaaattaatcaag 15005  T

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Target: scaffold0356; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 187 - 234
Target Start/End: Complemental strand, 15217 - 15170
Alignment:
Q  187 actcaactcttaatcgataaaagcttctttcagcttaattcaaactaa 234  Q
    |||||| |||||||||| ||||| |||||||||||||| |||||||||    
T  15217 actcaattcttaatcgaaaaaagtttctttcagcttaactcaaactaa 15170  T

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Target: scaffold0004 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 92851 - 92799
Alignment:
Q  1 taattacactaaattatgtaatttccttaaattattatccgtgtcggcgtgtc 53  Q
    |||||||||| ||||||||||||| || ||||||||| | |||||||||||||    
T  92851 taattacactgaattatgtaattttctcaaattattagcggtgtcggcgtgtc 92799  T

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Target: scaffold0107 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0107
Description:

Target: scaffold0107; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 188 - 234
Target Start/End: Original strand, 43206 - 43251
Alignment:
Q  188 ctcaactcttaatcgataaaagcttctttcagcttaattcaaactaa 234  Q
    ||||| |||||||||| |||||||||||||||||||| |||||||||    
T  43206 ctcaattcttaatcga-aaaagcttctttcagcttaactcaaactaa 43251  T

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Target: scaffold0018 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 192264 - 192316
Alignment:
Q  1 taattacactaaattatgtaatttccttaaattattatccgtgtcggcgtgtc 53  Q
    |||||||||  ||||||||||||| || ||||||||| | |||||||||||||    
T  192264 taattacaccgaattatgtaattttctcaaattattaacggtgtcggcgtgtc 192316  T

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