View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8911_low_57 (Length: 448)
Name: NF8911_low_57
Description: NF8911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8911_low_57 |
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Alignment Details
Target: chr8 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 22 - 442
Target Start/End: Original strand, 44417247 - 44417668
Alignment:
| Q |
22 |
taatattttttcagagtgaacaggaattaaagaacgaaataatcagcaaatttaatataatgttgtattgggatcgaggaatatccacaactaaaaaatt |
121 |
Q |
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| T |
44417247 |
taatattttttcagagtgaacaggaattaaagaacgaaataatcagcaaatttaatataatgttatattgggatcgaggaatatccacatctaaaaaatt |
44417346 |
T |
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| Q |
122 |
t-gttggtnnnnnnnncaatgtcaaccattaataattaacaatatgaatatataaaagtataaagaagttaacctgtttgctacacttgtgattttgtcc |
220 |
Q |
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| T |
44417347 |
ttgttggtaaaaacaacaatgtcaaccattaataattaacaatatgaatatataaaagtataaagaagttaacctgtttgctacacttgtgattttgtcc |
44417446 |
T |
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| Q |
221 |
ctaattccttggctagcaactgtacgttccaatgagaatccaccacctattattatggaagaaccagtggcacctgtacccatcctgtgtgaatatatag |
320 |
Q |
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| T |
44417447 |
ctaattccttggctagcaactgtacgttccaatgagaatccaccgcctattattatggaagaaccagtggcacctgtacccatcctgtgtgaatatatag |
44417546 |
T |
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| Q |
321 |
acatagcccactcacgaagtaccactagaacagatctcagcatccgtaatctaagatttggggatggcaaaattgccccatttgataacaattgatcata |
420 |
Q |
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| T |
44417547 |
acatagcccactcacgaagtaccactagaacagatctcagcatccgtaatctaagatttggggatggcaaaattgccccatttgataacaattgatcata |
44417646 |
T |
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| Q |
421 |
tgcgttcaacacaggttctgct |
442 |
Q |
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| T |
44417647 |
tgcgttcaatacaggttctgct |
44417668 |
T |
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