View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8911_low_6 (Length: 780)

Name: NF8911_low_6
Description: NF8911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8911_low_6
NF8911_low_6
[»] chr5 (20 HSPs)
chr5 (1-764)||(37704696-37705459)
chr5 (517-719)||(37437914-37438116)
chr5 (1-123)||(37699221-37699349)
chr5 (610-717)||(37700646-37700753)
chr5 (1-63)||(37437761-37437823)
chr5 (249-391)||(34599459-34599603)
chr5 (243-391)||(2143247-2143394)
chr5 (271-494)||(13953394-13953616)
chr5 (421-498)||(1629760-1629837)
chr5 (399-515)||(1629683-1629799)
chr5 (399-515)||(29532047-29532161)
chr5 (243-346)||(26325678-26325781)
chr5 (401-442)||(2143379-2143420)
chr5 (409-494)||(30384213-30384297)
chr5 (246-294)||(38458771-38458819)
chr5 (409-496)||(37704830-37704917)
chr5 (400-463)||(41232901-41232964)
chr5 (181-223)||(30384256-30384298)
chr5 (264-324)||(29531914-29531975)
chr5 (399-495)||(38458805-38458899)
[»] chr2 (15 HSPs)
chr2 (258-494)||(4558769-4559007)
chr2 (262-513)||(8198509-8198759)
chr2 (262-513)||(8203269-8203519)
chr2 (430-513)||(45385838-45385921)
chr2 (399-513)||(4923428-4923542)
chr2 (534-601)||(8265959-8266027)
chr2 (399-494)||(42053964-42054059)
chr2 (258-339)||(6739472-6739554)
chr2 (405-494)||(3289442-3289531)
chr2 (243-303)||(42054042-42054102)
chr2 (445-511)||(4558680-4558745)
chr2 (271-324)||(4923553-4923607)
chr2 (436-494)||(8198419-8198477)
chr2 (436-494)||(8203179-8203237)
chr2 (440-515)||(32546464-32546538)
[»] chr6 (21 HSPs)
chr6 (258-500)||(16419591-16419837)
chr6 (259-386)||(196111-196238)
chr6 (402-513)||(12458392-12458504)
chr6 (356-494)||(33547750-33547889)
chr6 (243-391)||(17411121-17411270)
chr6 (261-385)||(28477384-28477509)
chr6 (261-385)||(29789836-29789961)
chr6 (243-432)||(7004200-7004390)
chr6 (183-225)||(17411089-17411131)
chr6 (399-495)||(10544282-10544376)
chr6 (277-373)||(32548138-32548235)
chr6 (407-463)||(7202300-7202356)
chr6 (264-347)||(33547849-33547933)
chr6 (286-391)||(7202313-7202419)
chr6 (266-339)||(10544136-10544210)
chr6 (285-385)||(29693282-29693383)
chr6 (399-496)||(31314513-31314609)
chr6 (182-225)||(196244-196287)
chr6 (274-368)||(9405267-9405362)
chr6 (421-494)||(196063-196135)
chr6 (399-440)||(33547744-33547785)
[»] chr7 (24 HSPs)
chr7 (243-513)||(41331168-41331439)
chr7 (258-513)||(18128375-18128632)
chr7 (402-495)||(30551947-30552040)
chr7 (402-495)||(6589558-6589651)
chr7 (419-498)||(12422044-12422123)
chr7 (408-515)||(32804629-32804736)
chr7 (406-494)||(1532197-1532285)
chr7 (317-505)||(20389633-20389822)
chr7 (399-494)||(28003341-28003434)
chr7 (258-344)||(48447315-48447402)
chr7 (401-494)||(5755594-5755685)
chr7 (258-347)||(12264801-12264890)
chr7 (258-337)||(12422262-12422342)
chr7 (411-515)||(12422352-12422455)
chr7 (315-515)||(21920965-21921164)
chr7 (258-309)||(28002279-28002330)
chr7 (415-480)||(32918529-32918595)
chr7 (402-463)||(1532441-1532501)
chr7 (419-495)||(6586862-6586938)
chr7 (264-304)||(32857850-32857890)
chr7 (566-601)||(21595127-21595162)
chr7 (414-493)||(48447283-48447362)
chr7 (182-220)||(12422352-12422390)
chr7 (400-457)||(5762696-5762753)
[»] chr4 (24 HSPs)
chr4 (536-709)||(16840622-16840796)
chr4 (243-374)||(22519386-22519518)
chr4 (243-494)||(31095124-31095377)
chr4 (399-513)||(22519807-22519921)
chr4 (405-494)||(48194394-48194483)
chr4 (1-123)||(16840857-16840989)
chr4 (243-373)||(49291205-49291335)
chr4 (421-513)||(33617920-33618010)
chr4 (258-494)||(20141745-20141983)
chr4 (406-494)||(22889586-22889674)
chr4 (406-494)||(22941250-22941338)
chr4 (183-223)||(31095092-31095132)
chr4 (419-494)||(53769786-53769861)
chr4 (409-515)||(2323266-2323372)
chr4 (426-500)||(42676809-42676883)
chr4 (243-308)||(51580077-51580140)
chr4 (409-492)||(34013780-34013861)
chr4 (414-489)||(22519373-22519448)
chr4 (400-495)||(34717567-34717660)
chr4 (399-450)||(40070309-40070360)
chr4 (409-463)||(31095078-31095131)
chr4 (258-300)||(53769786-53769828)
chr4 (399-440)||(22519313-22519354)
chr4 (402-463)||(48194179-48194239)
[»] scaffold0591 (1 HSPs)
scaffold0591 (377-515)||(3866-4003)
[»] chr8 (18 HSPs)
chr8 (408-494)||(2277209-2277295)
chr8 (415-495)||(27532989-27533069)
chr8 (399-478)||(37064689-37064768)
chr8 (411-513)||(15907689-15907790)
chr8 (399-513)||(15907944-15908058)
chr8 (243-495)||(2510015-2510263)
chr8 (431-513)||(12807666-12807748)
chr8 (243-373)||(3806871-3807000)
chr8 (183-228)||(18080600-18080645)
chr8 (402-498)||(32566875-32566969)
chr8 (408-496)||(2967707-2967794)
chr8 (399-494)||(3806998-3807091)
chr8 (258-390)||(12189869-12190002)
chr8 (258-390)||(12434297-12434430)
chr8 (408-478)||(45445141-45445210)
chr8 (425-517)||(41123-41216)
chr8 (244-308)||(8453098-8453163)
chr8 (421-466)||(32566724-32566769)
[»] chr1 (22 HSPs)
chr1 (258-494)||(363615-363853)
chr1 (258-493)||(47726457-47726693)
chr1 (258-493)||(47747763-47747999)
chr1 (402-495)||(16554303-16554396)
chr1 (259-389)||(29954870-29955000)
chr1 (405-494)||(18470189-18470279)
chr1 (399-494)||(802251-802346)
chr1 (406-513)||(12656368-12656474)
chr1 (408-494)||(16026108-16026194)
chr1 (319-515)||(11016877-11017075)
chr1 (258-324)||(26706207-26706274)
chr1 (399-494)||(46530163-46530258)
chr1 (406-463)||(48130213-48130268)
chr1 (411-500)||(48130428-48130516)
chr1 (414-513)||(363806-363906)
chr1 (399-478)||(26706353-26706432)
chr1 (411-513)||(46530411-46530517)
chr1 (535-601)||(2125101-2125168)
chr1 (258-304)||(18470384-18470430)
chr1 (402-463)||(16026346-16026406)
chr1 (406-463)||(18470439-18470495)
chr1 (243-391)||(47600499-47600648)
[»] chr3 (9 HSPs)
chr3 (255-490)||(30534432-30534666)
chr3 (258-494)||(51265744-51265984)
chr3 (306-463)||(44291025-44291182)
chr3 (399-495)||(44291413-44291509)
chr3 (409-513)||(48200367-48200471)
chr3 (402-463)||(51265679-51265739)
chr3 (182-225)||(44291420-44291463)
chr3 (258-324)||(50898882-50898948)
chr3 (412-513)||(1662257-1662357)


Alignment Details
Target: chr5 (Bit Score: 655; Significance: 0; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 655; E-Value: 0
Query Start/End: Original strand, 1 - 764
Target Start/End: Original strand, 37704696 - 37705459
Alignment:
Q  1 tcatttaagtagcaatcacagtgagtaatgtgcttaaaaatacacctgaaatgaagaaaataacattaattgtatttagaatcggagacttagacttctt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37704696 tcatttaagtagcaatcacagtgagtaatgtgcttaaaaatacacctgaaatgaagaaaataacattaattgtatttagaatcggagacttagacttctt 37704795  T
Q  101 caaatgtacatactttaaagagcaaattacgatacttttaagttatttaattataacaaatcggnnnnnnnnnnnnnnnncgtatcacttacgtcattta 200  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||                |||||||||| |||||||||    
T  37704796 caaatgtacatactttaaagagcaaattacgagacttttaagttatttaattataacaaatcggttttttaagattttttcgtatcacttgcgtcattta 37704895  T
Q  201 agttatttaattataacaagttagttatgtagttgctcaaaaaacaagttagttatgtaagtatttttcataacacttaggtcgtttaagttatttaatt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  37704896 agttatttaattataacaagttagttatgtagttgctcaaaaaacaagttagttatgtaagtatttttcgtaacacttaggtcgtttaagttatttaatt 37704995  T
Q  301 gtaactttaggtcccgaataacttgcagttttaagatctgaaatccctcaatttcttacagttaaatagcttagaggacctaattggtacgnnnnnnntt 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||       ||    
T  37704996 gtaactttaggtcccgaataacttgcagttttaagatctgaaatccctcaatttgttacagttaaatagcttagaggacctaattggtacgaaaaaaatt 37705095  T
Q  401 aaaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaagactt 500  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||    
T  37705096 aaaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaatcttaaatgaccaatttcttacaactaaataacttaaaagactt 37705195  T
Q  501 atggtgtaatttaacatttattttatgtacgtgttttttgtatggttcttaactaaactacaaaaatttctttaaatttataattttttcaaagtttgtt 600  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  37705196 atggtgtaatttaacatttattttatgtacgtgttttttgtatggttcttaactaaactacaaaaatttctttaaatttataatttcttcaaagtttgtt 37705295  T
Q  601 acagcacaaaagaaaatgcattgagcatataaaaagaaaaagtatcagatgtcatcggatatcgatactctactcgtgagttctacggtagaccaccttt 700  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| |||||||||||||||||||||    
T  37705296 acagcacaaaagaaaatgcattgagcatataaaaagaaaaagtatcagatgccatcggatatcgatactcaactcgtgggttctacggtagaccaccttt 37705395  T
Q  701 ataattggttcatcatggaccacatttcttatatttacgactaagtgggtgacttgattgatgt 764  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37705396 ataattggttcatcatggaccacatttcttatatttacgactaagtgggtgacttgattgatgt 37705459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 517 - 719
Target Start/End: Original strand, 37437914 - 37438116
Alignment:
Q  517 tttattttatgtacgtgttttttgtatggttcttaactaaactacaaaaatttctttaaatttataattttttcaaagtttgttacagcacaaaagaaaa 616  Q
    ||||||||||||   | |||||| ||||||||||||||||||||||||||||||||||||||||||||||  |||||| || ||| |||||| |||||||    
T  37437914 tttattttatgtgttttttttttctatggttcttaactaaactacaaaaatttctttaaatttataatttcctcaaagcttattatagcacataagaaaa 37438013  T
Q  617 tgcattgagcatataaaaagaaaaagtatcagatgtcatcggatatcgatactctactcgtgagttctacggtagaccacctttataattggttcatcat 716  Q
    |||| |||||||||||||||||||||||| |  ||||||  |||||||||||||||||  |||||||||| ||| |||||||||||||  ||||||||||    
T  37438014 tgcactgagcatataaaaagaaaaagtattaagtgtcatatgatatcgatactctactattgagttctactgtaaaccacctttataagcggttcatcat 37438113  T
Q  717 gga 719  Q
    |||    
T  37438114 gga 37438116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 37699221 - 37699349
Alignment:
Q  1 tcatttaagtagcaatcacagtgagtaatgtgcttaaaaatacacctgaaatgaagaaaat------aacattaattgtatttagaatcggagacttaga 94  Q
    |||||||||||||||||| | |||||||| ||||||||||||||||| |||||||||||||      |||||||||||||||||| | ||||||||||||    
T  37699221 tcatttaagtagcaatcagaatgagtaatttgcttaaaaatacacctaaaatgaagaaaataataacaacattaattgtatttagcaacggagacttaga 37699320  T
Q  95 cttcttcaaatgtacatactttaaagagc 123  Q
    ||||||||| || ||| ||||||||||||    
T  37699321 cttcttcaactgaacagactttaaagagc 37699349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 610 - 717
Target Start/End: Original strand, 37700646 - 37700753
Alignment:
Q  610 aagaaaatgcattgagcatataaaaagaaaaagtatcagatgtcatcggatatcgatactctactcgtgagttctacggtagaccacctttataattggt 709  Q
    ||||||||||| |||||| ||||||||||||  ||| |  ||||||||||||| ||||||||||||||||||||||| ||||||||| ||||||| ||||    
T  37700646 aagaaaatgcactgagcacataaaaagaaaacatattaagtgtcatcggatattgatactctactcgtgagttctaccgtagaccacttttataagtggt 37700745  T
Q  710 tcatcatg 717  Q
    ||||||||    
T  37700746 tcatcatg 37700753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 37437761 - 37437823
Alignment:
Q  1 tcatttaagtagcaatcacagtgagtaatgtgcttaaaaatacacctgaaatgaagaaaataa 63  Q
    |||||||||||||||||| | |||||||| |||||||||||||||||||||||||||||||||    
T  37437761 tcatttaagtagcaatcagaatgagtaatttgcttaaaaatacacctgaaatgaagaaaataa 37437823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 249 - 391
Target Start/End: Original strand, 34599459 - 34599603
Alignment:
Q  249 ttagttatgtaagtatttttcataacacttaggtcgtttaagttatttaattgtaac-tttaggtcccgaataacttgcagttttaagatctgaaat-cc 346  Q
    |||||||| |||||||||||| |||  |||| ||| |||||||| |||||||||||| ||||||||| ||||||||| || ||||||||||| |||| ||    
T  34599459 ttagttatttaagtatttttcttaatgcttaagtcctttaagttgtttaattgtaacttttaggtccagaataacttacatttttaagatctaaaatacc 34599558  T
Q  347 ctcaatttcttacagttaaatagcttagaggacctaattggtacg 391  Q
    |  || || |||| |||||||| |||| | ||||||||| |||||    
T  34599559 caaaaattgttacggttaaataacttaaatgacctaattagtacg 34599603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 243 - 391
Target Start/End: Complemental strand, 2143394 - 2143247
Alignment:
Q  243 aacaagttagttatgtaagtatttttcataacacttaggtcgtttaagttatttaattgtaacttt-aggtcccgaataacttgcagttttaagatctga 341  Q
    |||||||||||  | | |||||||||| ||||| ||||||  ||||||||||||||||| |||||| ||| |||||||||||| ||  |||||||| | |    
T  2143394 aacaagttagtcctttcagtatttttcgtaacatttaggttttttaagttatttaattgaaactttgaggccccgaataacttacatgtttaagatataa 2143295  T
Q  342 aatccctcaatttcttacagttaaatagcttagaggacctaattggtacg 391  Q
    ||||||  || || ||  ||||||||| |||| ||||||||||| |||||    
T  2143294 aatcccctaaattgtt--agttaaataacttaaaggacctaattagtacg 2143247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 271 - 494
Target Start/End: Original strand, 13953394 - 13953616
Alignment:
Q  271 taacacttaggtcgtttaagttatttaattgtaactttaggtccc-gaataacttgcagttttaagatctgaaatccctcaatttcttacagttaaatag 369  Q
    ||||| ||| ||| ||||| |||||||| |||||||||  | ||  ||||||||| || ||||| | |||||||||||| || || ||||  |||||||     
T  13953394 taacatttaagtcctttaaattatttaactgtaacttttagaccttgaataacttacatttttagg-tctgaaatcccttaaatttttacgattaaataa 13953492  T
Q  370 cttagaggacctaattggtacgnnnnnnnttaaaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatca 469  Q
    |||| | ||| |||||||||||       ||||| ||| ||||||||| |||||||||||||||| ||| |||| |||| | ||||||||||||  | ||    
T  13953493 cttaaaagacgtaattggtacggaaaaacttaaaagacaaacttgttacaattaattaacttaaatgacttaagcggtatg-aaaaaacttaaaaaacca 13953591  T
Q  470 atttcttacaactaaataacttaaa 494  Q
    |||| ||| || |||| ||||||||    
T  13953592 atttattataattaaacaacttaaa 13953616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 421 - 498
Target Start/End: Complemental strand, 1629837 - 1629760
Alignment:
Q  421 ttaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaagac 498  Q
    |||| ||||||||||||| ||| || |||| |||||||||||| |||| |||| |||||| ||| |||||||||||||    
T  1629837 ttaaataacttaaaggacttaattgctacggaaaaaacttaaaggatcgatttgttacaattaattaacttaaaagac 1629760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 399 - 515
Target Start/End: Complemental strand, 1629799 - 1629683
Alignment:
Q  399 ttaaaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaagac 498  Q
    |||||||| | | |||||| |||||||||||||||| ||||||| | ||||  ||||   |||||  |  ||||| |||||| ||||||||||||| |||    
T  1629799 ttaaaggatcgatttgttacaattaattaacttaaaagacctaatttgtacagaaaatttttaaagaacgaatttattacaattaaataacttaaaggac 1629700  T
Q  499 ttatggtgtaatttaac 515  Q
    || ||||||||||||||    
T  1629699 ttttggtgtaatttaac 1629683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 399 - 515
Target Start/End: Original strand, 29532047 - 29532161
Alignment:
Q  399 ttaaaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaagac 498  Q
    ||||| ||||||||| ||| | ||||||||| ||||| | ||||||| |||| |||||| ||||| | ||||||| |||||| | |||||||| ||||||    
T  29532047 ttaaatgaccaactttttacagttaattaacataaagaagctaagtgatacg-aaaaaatttaaaggttcaatttgttacaattgaataactt-aaagac 29532144  T
Q  499 ttatggtgtaatttaac 515  Q
     |||| |||||||||||    
T  29532145 atatgatgtaatttaac 29532161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 243 - 346
Target Start/End: Original strand, 26325678 - 26325781
Alignment:
Q  243 aacaagttagttatgtaagtatttttcataacacttaggtcgtttaagttatttaattgtaactttaggtcccgaataacttgcagttttaagatctgaa 342  Q
    ||||||||||| || ||||||||| |  |||||||||  || ||||| |||||||||| ||||||||| ||| |||||||||  | |||||| || ||||    
T  26325678 aacaagttagtcatttaagtatttattgtaacacttaaatcctttaaattatttaattataactttagatcctgaataacttatatttttaatatttgaa 26325777  T
Q  343 atcc 346  Q
    ||||    
T  26325778 atcc 26325781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 401 - 442
Target Start/End: Original strand, 2143379 - 2143420
Alignment:
Q  401 aaaggaccaacttgttataattaattaacttaaaggacctaa 442  Q
    ||||||| ||||||||| ||||||||||||||||||||||||    
T  2143379 aaaggactaacttgttacaattaattaacttaaaggacctaa 2143420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 409 - 494
Target Start/End: Complemental strand, 30384297 - 30384213
Alignment:
Q  409 aacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaa 494  Q
    ||||||||| |||||| ||||||||| ||| |||||  |||| |||||||||||| ||  ||||| |||||| |||||||||||||    
T  30384297 aacttgttacaattaaataacttaaaagacgtaagtaatacg-aaaaaacttaaaagacaaatttgttacaattaaataacttaaa 30384213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 246 - 294
Target Start/End: Complemental strand, 38458819 - 38458771
Alignment:
Q  246 aagttagttatgtaagtatttttcataacacttaggtcgtttaagttat 294  Q
    |||||||| || ||||||||||||||||||||| |||| ||||||||||    
T  38458819 aagttagtcatttaagtatttttcataacacttgggtcctttaagttat 38458771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 409 - 496
Target Start/End: Complemental strand, 37704917 - 37704830
Alignment:
Q  409 aacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaag 496  Q
    |||||||||||||||| ||||||||| |||  ||||| |||| ||||| ||||||  | | |||| ||| || |||||||||||||||    
T  37704917 aacttgttataattaaataacttaaatgacgcaagtgatacgaaaaaatcttaaaaaaccgatttgttataattaaataacttaaaag 37704830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 400 - 463
Target Start/End: Complemental strand, 41232964 - 41232901
Alignment:
Q  400 taaaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaa 463  Q
    |||| ||||||||| ||| |||||||| |||||||||| ||||||||||   ||||||||||||    
T  41232964 taaaagaccaacttattacaattaattgacttaaaggatctaagtggtatcaaaaaaacttaaa 41232901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 181 - 223
Target Start/End: Original strand, 30384256 - 30384298
Alignment:
Q  181 cgtatcacttacgtcatttaagttatttaattataacaagtta 223  Q
    ||||| ||||||||| |||||||||||||||| ||||||||||    
T  30384256 cgtattacttacgtcttttaagttatttaattgtaacaagtta 30384298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 264 - 324
Target Start/End: Original strand, 29531914 - 29531975
Alignment:
Q  264 tttttcataacacttaggtcgtttaagttatttaattgtaa-ctttaggtcccgaataactt 324  Q
    |||||| || || ||| ||| ||||||||||||||||||||  |||||||||||||||||||    
T  29531914 tttttcgtatcatttacgtcatttaagttatttaattgtaatttttaggtcccgaataactt 29531975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 399 - 495
Target Start/End: Original strand, 38458805 - 38458899
Alignment:
Q  399 ttaaaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaa 495  Q
    ||||| ||| ||||| ||| ||| || ||||||||| ||  ||||||||||| ||||||||||||  |  ||||| |||||| ||||||||||||||    
T  38458805 ttaaatgactaacttattacaataaaataacttaaaagatataagtggtacgaaaaaaacttaaa--actaatttattacaattaaataacttaaaa 38458899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 95; Significance: 5e-46; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 95; E-Value: 5e-46
Query Start/End: Original strand, 258 - 494
Target Start/End: Original strand, 4558769 - 4559007
Alignment:
Q  258 taagtatttttcataacacttaggtcgtttaagttatttaattgtaacttt-aggtcccgaataacttgcagttttaagatctgaaatccctcaatttct 356  Q
    |||||||||||| ||||||||||||| ||||| |||||||||||||||||| ||| |  |||||||||||| ||||||||||| |||| |||||| |  |    
T  4558769 taagtatttttcgtaacacttaggtcttttaatttatttaattgtaacttttaggccatgaataacttgcatttttaagatctaaaatacctcaaatagt 4558868  T
Q  357 tacagttaaatagcttagaggacctaattggtac-gnnnnnnnttaaaggaccaacttgttataattaattaacttaaaggacctaagtggta-cgtaaa 454  Q
    ||| ||||||||||||| |||||||||||||||| |       |||||||| |||||||||| ||||||||||| ||||| |||||||| ||| |  |||    
T  4558869 tacggttaaatagcttaaaggacctaattggtacagacaaaacttaaaggaacaacttgttacaattaattaacataaagtacctaagttgtaccaaaaa 4558968  T
Q  455 aaacttaaatgatcaatttcttacaactaaataacttaaa 494  Q
    ||||||||| ||||||||| |||||| |||||||||||||    
T  4558969 aaacttaaa-gatcaatttattacaattaaataacttaaa 4559007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 262 - 513
Target Start/End: Original strand, 8198509 - 8198759
Alignment:
Q  262 tatttttcataacacttaggtcgtttaagttatttaattgtaacttt-aggtcccgaataacttgcagttttaagatctgaaatccctcaatttcttaca 360  Q
    |||||||| ||||||||||||  ||||||||||||||||| |||||| |||  || | |||||| || |||||||||||||||||||  || || ||||     
T  8198509 tatttttcttaacacttaggt--tttaagttatttaattgaaacttttaggctccaactaacttacatttttaagatctgaaatcccctaaattgttacg 8198606  T
Q  361 gttaaatagcttagaggacctaattggtacgnnnnnnn-ttaaaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaact 459  Q
    |||||||| |||| |||||||||||||||||        ||||||| ||||||| ||| ||||||||| |||||||||||||||||||||| ||||||||    
T  8198607 gttaaataacttaaaggacctaattggtacggaaaaaacttaaagggccaacttattacaattaattatcttaaaggacctaagtggtacggaaaaaact 8198706  T
Q  460 taaatgatcaatttcttacaactaaataacttaaaagacttatggtgtaattta 513  Q
    |||| || |||||| |||||| ||| ||||||||| || || |||| |||||||    
T  8198707 taaa-gaccaatttgttacaattaactaacttaaaggatttctggtataattta 8198759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 262 - 513
Target Start/End: Original strand, 8203269 - 8203519
Alignment:
Q  262 tatttttcataacacttaggtcgtttaagttatttaattgtaacttt-aggtcccgaataacttgcagttttaagatctgaaatccctcaatttcttaca 360  Q
    |||||||| ||||||||||||  ||||||||||||||||| |||||| |||  || | |||||| || |||||||||||||||||||  || || ||||     
T  8203269 tatttttcttaacacttaggt--tttaagttatttaattgaaacttttaggctccaactaacttacatttttaagatctgaaatcccctaaattgttacg 8203366  T
Q  361 gttaaatagcttagaggacctaattggtacgnnnnnnn-ttaaaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaact 459  Q
    |||||||| |||| |||||||||||||||||        ||||||| ||||||| ||| ||||||||| |||||||||||||||||||||| ||||||||    
T  8203367 gttaaataacttaaaggacctaattggtacggaaaaaacttaaagggccaacttattacaattaattatcttaaaggacctaagtggtacggaaaaaact 8203466  T
Q  460 taaatgatcaatttcttacaactaaataacttaaaagacttatggtgtaattta 513  Q
    |||| || |||||| |||||| ||| ||||||||| || || |||| |||||||    
T  8203467 taaa-gaccaatttgttacaattaactaacttaaaggatttctggtataattta 8203519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 430 - 513
Target Start/End: Complemental strand, 45385921 - 45385838
Alignment:
Q  430 ttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaagacttatggtgtaattta 513  Q
    ||||||||| ||||||||||| |||||||||||| |  |||||| |||||| ||||||||||||| ||| ||||||||||||||    
T  45385921 ttaaaggacgtaagtggtacgaaaaaaacttaaagggccaatttgttacaattaaataacttaaaggacctatggtgtaattta 45385838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 399 - 513
Target Start/End: Complemental strand, 4923542 - 4923428
Alignment:
Q  399 ttaaaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaagac 498  Q
    ||||||||  ||||| ||| |||| |||||| ||||  |||||| ||||||| ||||||| |||||||||||||| ||| || |||| ||||||| ||||    
T  4923542 ttaaaggattaacttattacaatttattaacgtaaaaaacctaaatggtacggaaaaaacataaatgatcaatttattataattaaaaaacttaagagac 4923443  T
Q  499 ttatggtgtaattta 513  Q
     |  |||||||||||    
T  4923442 atccggtgtaattta 4923428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 534 - 601
Target Start/End: Complemental strand, 8266027 - 8265959
Alignment:
Q  534 ttttttgtatggttcttaactaaactacaaa-aatttctttaaatttataattttttcaaagtttgtta 601  Q
    ||||| ||||| ||||||||| ||||||| | ||||||||||||||||||||||| ||||| |||||||    
T  8266027 tttttcgtatgattcttaacttaactacatacaatttctttaaatttataattttctcaaattttgtta 8265959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 399 - 494
Target Start/End: Complemental strand, 42054059 - 42053964
Alignment:
Q  399 ttaaaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaa 494  Q
    ||||||||| ||||||||| ||||||  ||||||||| ||||||||| ||   | |||||||||| ||| || || ||| ||||||||||||||||    
T  42054059 ttaaaggactaacttgttaaaattaaacaacttaaagaacctaagtgatataaacaaaacttaaaggattaacttattataactaaataacttaaa 42053964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 258 - 339
Target Start/End: Original strand, 6739472 - 6739554
Alignment:
Q  258 taagtatttttcataacacttaggtcgtttaagttatttaattgt-aactttaggtcccgaataacttgcagttttaagatct 339  Q
    |||||||||||  ||||| ||||||| |||||||||||||||||| ||||||| | | | |||||||| || |||||||||||    
T  6739472 taagtattttttgtaacatttaggtcatttaagttatttaattgtaaactttaagcctctaataacttacatttttaagatct 6739554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 405 - 494
Target Start/End: Original strand, 3289442 - 3289531
Alignment:
Q  405 gaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaa 494  Q
    ||||||||||||| |||||||| | ||||| ||  |||||| |||  |||||||||||| || |||||| |||||| ||||||| |||||    
T  3289442 gaccaacttgttacaattaattcaattaaaagatttaagtgatacaaaaaaaacttaaaagaccaatttattacaattaaataatttaaa 3289531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 243 - 303
Target Start/End: Original strand, 42054042 - 42054102
Alignment:
Q  243 aacaagttagttatgtaagtatttttcataacacttaggtcgtttaagttatttaattgta 303  Q
    |||||||||||  | |||||||||||| || |||||||||  |||||||||||||||||||    
T  42054042 aacaagttagtcctttaagtatttttcctatcacttaggttctttaagttatttaattgta 42054102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 445 - 511
Target Start/End: Complemental strand, 4558745 - 4558680
Alignment:
Q  445 ggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaagacttatggtgtaatt 511  Q
    |||||| |||||||||||| || |||||| |||||| |||||||||||| ||| |||| ||||||||    
T  4558745 ggtacgaaaaaaacttaaa-gaccaatttattacaattaaataacttaagagaattatcgtgtaatt 4558680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 271 - 324
Target Start/End: Original strand, 4923553 - 4923607
Alignment:
Q  271 taacacttaggtcgtttaagttatttaattgtaac-tttaggtcccgaataactt 324  Q
    ||||||||||||  ||||||||||||||||| ||| ||||||| |||||||||||    
T  4923553 taacacttaggtactttaagttatttaattgcaacttttaggttccgaataactt 4923607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 436 - 494
Target Start/End: Complemental strand, 8198477 - 8198419
Alignment:
Q  436 gacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaa 494  Q
    ||||||||||||||| |||||| |||||  | |||||| |||||| |||||||||||||    
T  8198477 gacctaagtggtacgaaaaaaatttaaagaaccaatttattacaattaaataacttaaa 8198419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 436 - 494
Target Start/End: Complemental strand, 8203237 - 8203179
Alignment:
Q  436 gacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaa 494  Q
    ||||||||||||||| |||||| |||||  | |||||| |||||| |||||||||||||    
T  8203237 gacctaagtggtacgaaaaaaatttaaagaaccaatttattacaattaaataacttaaa 8203179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 440 - 515
Target Start/End: Original strand, 32546464 - 32546538
Alignment:
Q  440 taagtggtacgtaaaa-aacttaaatgatcaatttcttacaactaaataacttaaaagacttatggtgtaatttaac 515  Q
    ||||||||||| |||| |||||||||||||||||| |||| | |||| ||||||||  || | ||||||||||||||    
T  32546464 taagtggtacgaaaaataacttaaatgatcaatttattacgattaaaaaacttaaa--acctctggtgtaatttaac 32546538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 88; Significance: 7e-42; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 88; E-Value: 7e-42
Query Start/End: Original strand, 258 - 500
Target Start/End: Complemental strand, 16419837 - 16419591
Alignment:
Q  258 taagtatttttcataacacttaggtcgtttaagttatttaattgtaac-tttaggtcccgaataacttgcagttttaagatctgaaatccctcaatttct 356  Q
    ||||||||| || ||||||||||||| ||||||||||||||||| ||| |||||| ||| |||||||| || || |||||||| ||||||||||| || |    
T  16419837 taagtatttgtcgtaacacttaggtcttttaagttatttaattgaaacttttaggccccaaataacttacatttctaagatctaaaatccctcaaattgt 16419738  T
Q  357 tacagttaaatagcttagaggacctaattggtacgnnnnnnnttaaaggaccaacttgttataattaattaacttaaaggacctaagtggtac---gtaa 453  Q
    ||| |||||||| |||| |||| | ||||||||||       ||||| ||||||||||||| |||||||||||||||| || |||| ||||||     ||    
T  16419737 tacggttaaataacttaaaggatcaaattggtacgaaaaaacttaaatgaccaacttgttacaattaattaacttaaatgatctaattggtacaaaagaa 16419638  T
Q  454 aaaacttaaatgatcaatttcttacaactaaataacttaaaagactt 500  Q
    || |||| |||||||||||| |||||| ||||||||||||| |||||    
T  16419637 aatacttcaatgatcaatttgttacaattaaataacttaaaggactt 16419591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 259 - 386
Target Start/End: Complemental strand, 196238 - 196111
Alignment:
Q  259 aagtatttttcataacacttaggtcgtttaagttatttaattgtaacttt-aggtcccgaataacttgcagttttaagatctgaaatccctcaatttctt 357  Q
    |||||| ||||  |||||||||||| |||||||||||||||||||||||| | | || ||||||||| || ||||||||| |||||| |||||| || ||    
T  196238 aagtatatttcgaaacacttaggtc-tttaagttatttaattgtaacttttaagccctgaataacttacatttttaagatatgaaatacctcaaattgtt 196140  T
Q  358 acagttaaatagcttagaggacctaattg 386  Q
    || ||||| || |||| ||||||||||||    
T  196139 acggttaagtaacttaaaggacctaattg 196111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 402 - 513
Target Start/End: Original strand, 12458392 - 12458504
Alignment:
Q  402 aaggaccaacttgttataattaattaacttaaaggacctaagtggtac-gtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaagactt 500  Q
    ||||||||||||||| ||||| ||||||||||||||||||||  |||| | ||||||||||||  | ||| || |||||| ||||||||||||| |||||    
T  12458392 aaggaccaacttgttttaatttattaacttaaaggacctaagaagtacgggaaaaaacttaaagtaccaaattgttacaattaaataacttaaaggactt 12458491  T
Q  501 atggtgtaattta 513  Q
     | ||||||||||    
T  12458492 ctagtgtaattta 12458504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 356 - 494
Target Start/End: Complemental strand, 33547889 - 33547750
Alignment:
Q  356 ttacagttaaatagcttagaggacctaattggtacgnnnnnnnttaaaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaa- 454  Q
    ||||| ||||||| |||| ||||||||| ||||| |       ||||| ||| ||||||||| |||||||||||||||||||| ||||||| ||  |||     
T  33547889 ttacaattaaataacttaaaggacctaaatggtatgaaaaaacttaaaagacaaacttgttacaattaattaacttaaaggacataagtggaacaaaaat 33547790  T
Q  455 aaacttaaatgatcaatttcttacaactaaataacttaaa 494  Q
    ||||||||| || |||||| |||||| |||||||||||||    
T  33547789 aaacttaaaggaccaatttgttacaattaaataacttaaa 33547750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 243 - 391
Target Start/End: Original strand, 17411121 - 17411270
Alignment:
Q  243 aacaagttagttatgtaagtatttttcataacacttaggtcgtttaagttatttaattgtaactttaggtc-ccgaataacttgcagttttaagatctga 341  Q
    |||||||||||  | ||| |||||||| ||| || || ||| ||| ||||||||||||||||| ||  ||| ||||||||||| || |||||||||||||    
T  17411121 aacaagttagtcttttaaatatttttcgtaatacataagtcttttgagttatttaattgtaacgtttagtctccgaataacttacatttttaagatctga 17411220  T
Q  342 aatccctcaatttcttacagttaaatagcttagaggacctaattggtacg 391  Q
    |||||| ||| || ||||  ||||||| |||| || || |||||||||||    
T  17411221 aatcccccaaattattacgattaaataacttaaagtacataattggtacg 17411270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 261 - 385
Target Start/End: Complemental strand, 28477509 - 28477384
Alignment:
Q  261 gtatttttcataacacttaggtcgtttaagttatttaattgtaacttt-aggtcccgaataacttgcagttttaagatctgaaatccctcaatttcttac 359  Q
    ||||||||||||||| ||||||  ||||| ||||||||| |||| ||| ||| |||||||||||| || ||||||||||| ||||| |  || || ||||    
T  28477509 gtatttttcataacagttaggttctttaaattatttaatcgtaatttttaggccccgaataacttacatttttaagatctaaaatcgcctaaattattac 28477410  T
Q  360 agttaaatagcttagaggacctaatt 385  Q
    |||| |||| |||| || ||||||||    
T  28477409 agttcaataacttaaagaacctaatt 28477384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 261 - 385
Target Start/End: Complemental strand, 29789961 - 29789836
Alignment:
Q  261 gtatttttcataacacttaggtcgtttaagttatttaattgtaacttt-aggtcccgaataacttgcagttttaagatctgaaatccctcaatttcttac 359  Q
    ||||||||||||||| ||||||  ||||| ||||||||| |||| ||| ||| |||||||||||| || ||||||||||| ||||| |  || || ||||    
T  29789961 gtatttttcataacagttaggttctttaaattatttaatcgtaatttttaggccccgaataacttacaattttaagatctaaaatcgcctaaattattac 29789862  T
Q  360 agttaaatagcttagaggacctaatt 385  Q
    |||| |||| |||| || ||||||||    
T  29789861 agttcaataacttaaagaacctaatt 29789836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 243 - 432
Target Start/End: Original strand, 7004200 - 7004390
Alignment:
Q  243 aacaagttagttatgtaagtatttttcataacacttaggtcgtttaagttatttaattgtaac-tttaggtcccgaataacttgcagttttaagatctga 341  Q
    |||||||||||  | |||||||||||  || |||||| ||| ||||||||||||||||| ||| ||||   || |||||||||  | ||||||||||| |    
T  7004200 aacaagttagtcctttaagtattttttgtatcacttatgtc-tttaagttatttaattgcaacatttaaaccctgaataacttatacttttaagatctaa 7004298  T
Q  342 aatccctcaatttcttacagttaaatagcttagaggacctaattggtac-gnnnnnnnttaaaggaccaacttgttataattaattaactta 432  Q
    |||  ||||| || |||| |||||||| |||| || ||||||||||||| |        ||||||| |||||||||||||||||| ||||||    
T  7004299 aatttctcaaattgttacggttaaataacttaaagaacctaattggtacagagaaaacataaaggatcaacttgttataattaataaactta 7004390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 183 - 225
Target Start/End: Original strand, 17411089 - 17411131
Alignment:
Q  183 tatcacttacgtcatttaagttatttaattataacaagttagt 225  Q
    |||||||||||||||||||||||||||||| ||||||||||||    
T  17411089 tatcacttacgtcatttaagttatttaattgtaacaagttagt 17411131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 399 - 495
Target Start/End: Original strand, 10544282 - 10544376
Alignment:
Q  399 ttaaaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaa 495  Q
    ||||| || |||||| ||||||||||||||||||| ||| |||| | ||||| ||||||||||||   ||||||| |||||  ||||||||||||||    
T  10544282 ttaaatgatcaacttattataattaattaacttaatggatctaactagtacgaaaaaaacttaaa--gtcaatttgttacagataaataacttaaaa 10544376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 277 - 373
Target Start/End: Complemental strand, 32548235 - 32548138
Alignment:
Q  277 ttaggtcgtttaagttatttaattgtaac-tttaggtcccgaataacttgcagttttaagatctgaaatccctcaatttcttacagttaaatagctta 373  Q
    ||||||| ||||||||||||||||||||| ||||| ||||||||| ||| || ||||||||| | |||| || ||| || |||| |||||||| ||||    
T  32548235 ttaggtcctttaagttatttaattgtaacttttagatcccgaatagcttacatttttaagatttaaaataccgcaaattgttacggttaaataactta 32548138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 407 - 463
Target Start/End: Complemental strand, 7202356 - 7202300
Alignment:
Q  407 ccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaa 463  Q
    ||||| ||||| ||||||||||| |||||||||||| ||||||| ||||||||||||    
T  7202356 ccaacatgttacaattaattaacataaaggacctaaatggtacgaaaaaaacttaaa 7202300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 264 - 347
Target Start/End: Original strand, 33547849 - 33547933
Alignment:
Q  264 tttttcataacacttaggtcgtttaagttatttaattgtaac-tttaggtcccgaataacttgcagttttaagatctgaaatccc 347  Q
    ||||||||| || ||||||| ||||||||||||||||||||| |||| ||  ||||||||||  | ||||||| |||||||||||    
T  33547849 tttttcataccatttaggtcctttaagttatttaattgtaacttttaagtttcgaataacttaaatttttaaggtctgaaatccc 33547933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 286 - 391
Target Start/End: Complemental strand, 7202419 - 7202313
Alignment:
Q  286 ttaagttatttaattgtaac-tttaggtcccgaataacttgcagttttaagatctgaaatccctcaatttcttacagttaaatagcttagaggacctaat 384  Q
    |||||||||||||||||||| |||||| ||||||||||||  | ||||||||||| ||||| | |||  | ||||| |||| || | || |||||||||     
T  7202419 ttaagttatttaattgtaacttttaggccccgaataacttaaatttttaagatctaaaatctcccaacatgttacaattaattaacataaaggacctaaa 7202320  T
Q  385 tggtacg 391  Q
    |||||||    
T  7202319 tggtacg 7202313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 266 - 339
Target Start/End: Original strand, 10544136 - 10544210
Alignment:
Q  266 tttcataacacttaggtcgtttaagttatttaattgtaac-tttaggtcccgaataacttgcagttttaagatct 339  Q
    |||| ||||||||||||| ||||||||| ||||||||||| ||||||||  |||||| || || |||||||||||    
T  10544136 tttcgtaacacttaggtcatttaagttagttaattgtaacttttaggtcttgaataatttacatttttaagatct 10544210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 285 - 385
Target Start/End: Complemental strand, 29693383 - 29693282
Alignment:
Q  285 tttaagttatttaattgtaacttt-aggtcccgaataacttgcagttttaagatctgaaatccctcaatttcttacagttaaatagcttagaggacctaa 383  Q
    ||||| ||||||||| |||||||| ||| |||||||||||| || ||||||||||| ||||| |  || || |||||||| |||| |||| || ||||||    
T  29693383 tttaaattatttaatcgtaacttttaggacccgaataacttacatttttaagatctaaaatcgcctaaattattacagttcaataacttaaagaacctaa 29693284  T
Q  384 tt 385  Q
    ||    
T  29693283 tt 29693282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 399 - 496
Target Start/End: Complemental strand, 31314609 - 31314513
Alignment:
Q  399 ttaaaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaag 496  Q
    ||||| ||| || ||||||||||||| |||||||||  || |||||| |||  ||||||||||||||||||| || ||| || ||||||||| |||||    
T  31314609 ttaaatgactaatttgttataattaaataacttaaaa-acataagtgatactgaaaaaacttaaatgatcaacttgttataattaaataactcaaaag 31314513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 225
Target Start/End: Complemental strand, 196287 - 196244
Alignment:
Q  182 gtatcacttacgtcatttaagttatttaattataacaagttagt 225  Q
    ||||||||||||||||||||||||||||||| ||| || |||||    
T  196287 gtatcacttacgtcatttaagttatttaattgtaataatttagt 196244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 274 - 368
Target Start/End: Complemental strand, 9405362 - 9405267
Alignment:
Q  274 cacttaggtcgtttaagttatttaattgtaactt-taggtcccgaataacttgcagttttaagatctgaaatccctcaatttcttacagttaaata 368  Q
    ||||||| || |||||||||||||||||||| || ||  | ||||||||||   | |||||||||||||||| |||||| || |||| ||||||||    
T  9405362 cacttagatcctttaagttatttaattgtaatttataaatgccgaataactaaaatttttaagatctgaaattcctcaaattgttacggttaaata 9405267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 421 - 494
Target Start/End: Complemental strand, 196135 - 196063
Alignment:
Q  421 ttaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaa 494  Q
    |||| ||||||||||||||||| || |||  ||||||||||||| |||||||| |||||| ||| ||| |||||    
T  196135 ttaagtaacttaaaggacctaattgatactgaaaaaacttaaat-atcaatttgttacaattaattaatttaaa 196063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 399 - 440
Target Start/End: Complemental strand, 33547785 - 33547744
Alignment:
Q  399 ttaaaggaccaacttgttataattaattaacttaaaggacct 440  Q
    |||||||||||| |||||| |||||| |||||||||||||||    
T  33547785 ttaaaggaccaatttgttacaattaaataacttaaaggacct 33547744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 84; Significance: 2e-39; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 243 - 513
Target Start/End: Original strand, 41331168 - 41331439
Alignment:
Q  243 aacaagttagttatgtaagtatttttcataacacttaggtcgtttaagttatttaattgtaacttt-aggtcccgaataacttgcagttttaagatctga 341  Q
    |||||||||||  | ||| ||||||||||| |||||||||| |||||||||||||||| ||||||| ||||  ||||||||||  | ||||| |||||      
T  41331168 aacaagttagtagtttaaatatttttcatagcacttaggtc-tttaagttatttaattataacttttaggtatcgaataacttcaatttttaggatctag 41331266  T
Q  342 aatccctcaatttcttacagttaaatagcttagaggacctaattggtacgnnnnnnn-ttaaaggaccaacttgttataattaattaacttaaaggacct 440  Q
    ||||||  || || |||| |||||||| |||| | ||||| ||||||||         |||||| ||||||||||||||||| ||||||||||| || ||    
T  41331267 aatccccaaaattgttacggttaaataacttaaatgacctcattggtacatgaaaaacttaaagaaccaacttgttataatttattaacttaaatgagct 41331366  T
Q  441 aagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaagacttatggtgtaattta 513  Q
    | ||||||||  ||||||||||||||||||||| |||||| ||||||||||||| |||||||| | |||||||    
T  41331367 aggtggtacgagaaaaacttaaatgatcaatttattacaattaaataacttaaatgacttatgatataattta 41331439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 258 - 513
Target Start/End: Original strand, 18128375 - 18128632
Alignment:
Q  258 taagtatttttcataacacttaggtcgtttaagttatttaattgtaactttaggtccc-gaataacttgcagttttaagatctgaaatccctcaatttct 356  Q
    |||||||| ||| |||||||||| || ||||| || |||||||||||||||    ||  ||||||||| || |||||||||||||||| |  ||| || |    
T  18128375 taagtattcttcgtaacacttagatcctttaaattttttaattgtaacttttaaaccttgaataacttacatttttaagatctgaaattcgccaaattgt 18128474  T
Q  357 tacagttaaatagcttagaggacctaattggtacgnnnnnnn-ttaaaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaa 455  Q
    ||  |||||||| |||| |||| |||||| |||||        |||||| |||||||| ||| ||||||||||||||||| |||||||| ||||| ||||    
T  18128475 tatggttaaataacttaaaggatctaattcgtacgaaaaaaaattaaagcaccaacttattacaattaattaacttaaagaacctaagtagtacg-aaaa 18128573  T
Q  456 aactt-aaatgatcaatttcttacaactaaataacttaaaagacttatggtgtaattta 513  Q
    ||||| ||| || |||||| |||||  ||||||| ||||| ||| ||||||||||||||    
T  18128574 aacttaaaaggaccaatttattacatttaaataatttaaaggacctatggtgtaattta 18128632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 402 - 495
Target Start/End: Original strand, 30551947 - 30552040
Alignment:
Q  402 aaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaa 495  Q
    |||||||||||||||| |||| ||||||||||| ||||||||||||||  |||||||||||| || |||||| |||||| ||||||||||||||    
T  30551947 aaggaccaacttgttacaattgattaacttaaatgacctaagtggtaccaaaaaaacttaaaggaccaatttattacaattaaataacttaaaa 30552040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 402 - 495
Target Start/End: Original strand, 6589558 - 6589651
Alignment:
Q  402 aaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaa 495  Q
    |||||||||||| ||| |||| ||||||||||| ||||||||||||||  |||||||||||| ||||||||| |||||| ||||| ||||||||    
T  6589558 aaggaccaacttattacaattgattaacttaaatgacctaagtggtaccaaaaaaacttaaaggatcaatttattacaattaaattacttaaaa 6589651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 419 - 498
Target Start/End: Complemental strand, 12422123 - 12422044
Alignment:
Q  419 aattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaagac 498  Q
    |||||||| ||||||||||||||||||||| | ||||||||||||||| |||||| |||||| | |||||||||||||||    
T  12422123 aattaatttacttaaaggacctaagtggtatgaaaaaaacttaaatgaccaatttattacaatttaataacttaaaagac 12422044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 408 - 515
Target Start/End: Original strand, 32804629 - 32804736
Alignment:
Q  408 caacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaagacttatggtgt 507  Q
    |||||||||  |||||||||||||||| ||| ||||| ||| | ||||||| |||| ||||||||| |||||| |||||| | |||||||||| ||||||    
T  32804629 caacttgttgcaattaattaacttaaatgacttaagttgtatgaaaaaaacctaaaagatcaatttattacaattaaatatcctaaaagacttgtggtgt 32804728  T
Q  508 aatttaac 515  Q
    ||||||||    
T  32804729 aatttaac 32804736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 406 - 494
Target Start/End: Complemental strand, 1532285 - 1532197
Alignment:
Q  406 accaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaa 494  Q
    |||||||||||||| |||| |||||||||||||||||| |||||  ||||||  ||||||||||| || |||||| |||||||||||||    
T  1532285 accaacttgttatagttaaataacttaaaggacctaagaggtacaaaaaaaatgtaaatgatcaacttattacaattaaataacttaaa 1532197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 317 - 505
Target Start/End: Complemental strand, 20389822 - 20389633
Alignment:
Q  317 aataacttgcagttttaagatctgaaatccctcaatttcttacagttaaatagcttagaggacctaattggtacgnnnnnnnttaaaggaccaacttgtt 416  Q
    |||||||| || ||||||||||| |||| |  ||| || ||||||||||||| |||| |||| |||||| |||||        | || ||||||||||||    
T  20389822 aataacttacatttttaagatctaaaattcgccaaattgttacagttaaataacttaaaggatctaattcgtacgaaaaaaacttaaagaccaacttgtt 20389723  T
Q  417 ataattaattaacttaaaggacctaagtggtacg-taaaaaacttaaatgatcaatttcttacaactaaataacttaaaagacttatggt 505  Q
    | ||||||||||||||||| | |||||| |||||  ||||||||||||  |  | ||| |||||  ||||||||||||||||| ||||||    
T  20389722 acaattaattaacttaaagcatctaagtagtacgaaaaaaaacttaaagaactactttgttacatttaaataacttaaaagacctatggt 20389633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 399 - 494
Target Start/End: Original strand, 28003341 - 28003434
Alignment:
Q  399 ttaaaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaa 494  Q
    |||||||| |||||||||| | |||||||||||||||||||||| ||||||| ||||||||| || |||||| || |||||| ||||||| |||||    
T  28003341 ttaaaggatcaacttgttacatttaattaacttaaaggacctaattggtacg-aaaaaactt-aacgatcaacttgttacaattaaataatttaaa 28003434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 258 - 344
Target Start/End: Original strand, 48447315 - 48447402
Alignment:
Q  258 taagtatttttcataacacttaggtcgtttaagttatttaattgtaac-tttaggtcccgaataacttgcagttttaagatctgaaat 344  Q
    |||||||||||| |||| |||||||| ||||||||||||||||||||| |||| | ||  |||||||| || ||||||||||| ||||    
T  48447315 taagtatttttcgtaacgcttaggtcctttaagttatttaattgtaacttttatgcccaaaataacttacatttttaagatctaaaat 48447402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 401 - 494
Target Start/End: Complemental strand, 5755685 - 5755594
Alignment:
Q  401 aaaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaa 494  Q
    ||||||||||||||||| ||||||||||| |||| ||  |||||||||||  ||||| ||||| |  |||||| |||||| |||||||||||||    
T  5755685 aaaggaccaacttgttacaattaattaacataaatgatttaagtggtacg--aaaaaattaaagggccaatttgttacaattaaataacttaaa 5755594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 258 - 347
Target Start/End: Original strand, 12264801 - 12264890
Alignment:
Q  258 taagtatttttcataacacttaggtcgtttaagttatttaattgtaactttaggtcccgaataacttgcagttttaagatctgaaatccc 347  Q
    |||||||||||| || |||||||||| || ||||||||||| ||||||||| || |  ||||||||| || ||| ||||| |||||||||    
T  12264801 taagtatttttcgtaccacttaggtctttcaagttatttaagtgtaacttttggccatgaataacttacattttaaagatttgaaatccc 12264890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 258 - 337
Target Start/End: Complemental strand, 12422342 - 12422262
Alignment:
Q  258 taagtatttttcataacacttaggtcgtttaagttatttaattgtaac-tttaggtcccgaataacttgcagttttaagat 337  Q
    |||||||| ||  |||||||||  || ||||||||||||||||||||| |||||||||||||||||||  | |||||||||    
T  12422342 taagtattgtttgtaacacttaaatcctttaagttatttaattgtaacttttaggtcccgaataacttatacttttaagat 12422262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 411 - 515
Target Start/End: Original strand, 12422352 - 12422455
Alignment:
Q  411 cttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaagacttatggtgtaat 510  Q
    ||||||| |||||| ||||||||| ||| |||||| |||  |||||||||||| ||| ||||| |||||| |||||||||||||  | ||  ||||||||    
T  12422352 cttgttaaaattaaataacttaaaagacgtaagtgataca-aaaaaacttaaaggatgaatttgttacaattaaataacttaaagaaattccggtgtaat 12422450  T
Q  511 ttaac 515  Q
    |||||    
T  12422451 ttaac 12422455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 315 - 515
Target Start/End: Original strand, 21920965 - 21921164
Alignment:
Q  315 cgaataacttgcagttttaagatctgaaatccctcaatttcttacagttaaatagcttagaggacctaattggtacgnnnnnnn-ttaaaggaccaactt 413  Q
    |||||||||| || ||||||| ||| |||| || ||| || |||  |||||||| |||| ||||||||||| |||||        |||||  | ||||||    
T  21920965 cgaataacttacatttttaaggtctaaaattccccaaatttttatggttaaataacttaaaggacctaattagtacggaaaaaacttaaataaacaactt 21921064  T
Q  414 gttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaagacttatggtgtaattta 513  Q
    |||| | ||||||||||||||| || |||||||||   |||||||||||||||  ||||  ||| |  ||||||||||||| |||||||| |||||||||    
T  21921065 gttacagttaattaacttaaag-acataagtggtaaa-aaaaaacttaaatgacaaattagttatagttaaataacttaaatgacttatgatgtaattta 21921162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 258 - 309
Target Start/End: Original strand, 28002279 - 28002330
Alignment:
Q  258 taagtatttttcataacacttaggtcgtttaagttatttaattgtaacttta 309  Q
    |||||| |||||||| |||||||||| |||||||| ||||||||||||||||    
T  28002279 taagtacttttcataccacttaggtcctttaagttgtttaattgtaacttta 28002330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 415 - 480
Target Start/End: Complemental strand, 32918595 - 32918529
Alignment:
Q  415 ttataattaattaacttaaaggacctaagtggtacgtaa-aaaacttaaatgatcaatttcttacaa 480  Q
    ||||||||||||||||||||||| ||||||| |||| || |||||| ||| ||||||||| ||||||    
T  32918595 ttataattaattaacttaaaggagctaagtgatacgaaataaaactcaaaagatcaatttattacaa 32918529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 402 - 463
Target Start/End: Original strand, 1532441 - 1532501
Alignment:
Q  402 aaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaa 463  Q
    |||||||||||||||| |||||| ||||||||||  | ||||||||||| ||||||||||||    
T  1532441 aaggaccaacttgttacaattaagtaacttaaagagcgtaagtggtacg-aaaaaacttaaa 1532501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 419 - 495
Target Start/End: Complemental strand, 6586938 - 6586862
Alignment:
Q  419 aattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaa 495  Q
    |||| ||||||||||| ||||||||| ||||  |||||| ||||  ||||||||| |||||| ||||| ||||||||    
T  6586938 aattgattaacttaaatgacctaagtagtaccaaaaaaatttaagagatcaatttattacaattaaattacttaaaa 6586862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 264 - 304
Target Start/End: Original strand, 32857850 - 32857890
Alignment:
Q  264 tttttcataacacttaggtcgtttaagttatttaattgtaa 304  Q
    |||||| ||||||||||||| ||||||||||||||||||||    
T  32857850 tttttcgtaacacttaggtcttttaagttatttaattgtaa 32857890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 566 - 601
Target Start/End: Complemental strand, 21595162 - 21595127
Alignment:
Q  566 atttctttaaatttataattttttcaaagtttgtta 601  Q
    ||||||||||||| ||||||||||||||||||||||    
T  21595162 atttctttaaattcataattttttcaaagtttgtta 21595127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 414 - 493
Target Start/End: Complemental strand, 48447362 - 48447283
Alignment:
Q  414 gttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaa 493  Q
    |||| |||||| |||||||||||||||||| | |||| |||| |||||||  |  ||||| |||||| ||||||||||||    
T  48447362 gttacaattaaataacttaaaggacctaagcgttacgaaaaatacttaaagtactaatttgttacaattaaataacttaa 48447283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 182 - 220
Target Start/End: Complemental strand, 12422390 - 12422352
Alignment:
Q  182 gtatcacttacgtcatttaagttatttaattataacaag 220  Q
    |||||||||||||| |||||||||||||||| |||||||    
T  12422390 gtatcacttacgtcttttaagttatttaattttaacaag 12422352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 400 - 457
Target Start/End: Complemental strand, 5762753 - 5762696
Alignment:
Q  400 taaaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaa 457  Q
    ||||| |||||||||||| ||||||||||| || |  |||||||||||||| ||||||    
T  5762753 taaagaaccaacttgttacaattaattaacatatattacctaagtggtacggaaaaaa 5762696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 75; Significance: 4e-34; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 536 - 709
Target Start/End: Complemental strand, 16840796 - 16840622
Alignment:
Q  536 ttttgtatggttcttaactaaactacaaaaatttctttaaatttataattttttcaaagtttgttacagcacaaaagaaaatgcattgagcatataaaaa 635  Q
    |||| ||| ||| ||||||||||||||||||||||||||||| |||||||| |||||||||||||| | || | ||||||||| | | ||||||||||||    
T  16840796 ttttttatagtttttaactaaactacaaaaatttctttaaatctataatttattcaaagtttgttataacaaataagaaaatgtactaagcatataaaaa 16840697  T
Q  636 gaaaaagtatcagatgtcatcggata-tcgatactctactcgtgagttctacggtagaccacctttataattggt 709  Q
    |||||||||| |  ||||||  |||| | ||||||||||||||||||||||  ||| ||||| ||||||| ||||    
T  16840696 gaaaaagtattaagtgtcataagatatttgatactctactcgtgagttctaaagtaaaccacttttataagtggt 16840622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 243 - 374
Target Start/End: Original strand, 22519386 - 22519518
Alignment:
Q  243 aacaagttagttatgtaagtatttttcataacacttaggtcgtttaagttatttaattgtaac-tttaggtcccgaataacttgcagttttaagatctga 341  Q
    |||||||||||  | |||||||||||| ||||||||||||| ||||||||||||||||||||| |||||||||| |||||||| || |||||||||||||    
T  22519386 aacaagttagtcctttaagtatttttcgtaacacttaggtcctttaagttatttaattgtaacttttaggtcccaaataacttacatttttaagatctga 22519485  T
Q  342 aatccctcaatttcttacagttaaatagcttag 374  Q
    |||||| ||| ||  ||| |||||||| |||||    
T  22519486 aatcccccaaattgctacggttaaataacttag 22519518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 243 - 494
Target Start/End: Original strand, 31095124 - 31095377
Alignment:
Q  243 aacaagttagttatgtaagtatttttcataacacttaggtcgtttaagttatttaattgtaac-tttaggtcccgaataacttgcagttttaagatctga 341  Q
    ||||||||| | || |||||||| ||  ||||||||||||  ||||||||||||||||||||| ||||||||  ||||||||| || |||||||||||||    
T  31095124 aacaagttaatcatttaagtattgtttgtaacacttaggttctttaagttatttaattgtaacttttaggtcttgaataacttacatttttaagatctga 31095223  T
Q  342 aatccctcaatttcttacagttaaatagcttagaggacctaattggtacgnnnnnnnttaaaggaccaacttgttataattaattaacttaaaggaccta 441  Q
    |||||   || ||  ||  || |||||||||| | ||||| ||||||| |       ||| ||||  ||||||||| || ||||||||||||| ||||||    
T  31095224 aatcctaaaaattgatatggtaaaatagcttaaatgaccttattggtaggaaaaaacttataggattaacttgttacaactaattaacttaaaagaccta 31095323  T
Q  442 agtggtacgtaaaaaacttaaat-gatcaatttcttacaactaaataacttaaa 494  Q
    | ||||||| ||| || |||| | ||  ||||| |||||| |||||||||||||    
T  31095324 aatggtacgaaaataatttaagtggacaaatttattacaattaaataacttaaa 31095377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 399 - 513
Target Start/End: Original strand, 22519807 - 22519921
Alignment:
Q  399 ttaaaggaccaacttgttataattaattaacttaaaggacctaagtggtac-gtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaaga 497  Q
    |||||||| ||||||||||||||||||||||||||| |||||||||||||| | ||||||||| || || |||||| |||||| ||||||| || |||||    
T  22519807 ttaaaggatcaacttgttataattaattaacttaaaagacctaagtggtacggaaaaaaactttaaggaccaatttgttacaattaaataa-tttaaaga 22519905  T
Q  498 cttatggtgtaattta 513  Q
    | | ||||||||||||    
T  22519906 cctctggtgtaattta 22519921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 405 - 494
Target Start/End: Original strand, 48194394 - 48194483
Alignment:
Q  405 gaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaa 494  Q
    ||||||||||||| | |||| |||||||||||||||||| |||||| ||||||| ||||||||||| || |||||| |||||||||||||    
T  48194394 gaccaacttgttacagttaaataacttaaaggacctaagaggtacgaaaaaaacgtaaatgatcaacttattacaattaaataacttaaa 48194483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 16840989 - 16840857
Alignment:
Q  1 tcatttaagtagcaatcacagtgagtaatgtgcttaaaaata----cacctgaaatgaagaaaataa------cattaattgtatttagaatcggagact 90  Q
    ||||||||||| |||||||| ||| |||| ||||||||||||    |||||||||||||||||||||      |||||| ||||||||||| ||||||||    
T  16840989 tcatttaagtaccaatcacaatgaataatttgcttaaaaatatatacacctgaaatgaagaaaataataacaacattaaatgtatttagaagcggagact 16840890  T
Q  91 tagacttcttcaaatgtacatactttaaagagc 123  Q
    |||||||| |||| | | |||||||||||||||    
T  16840889 tagacttcgtcaactatccatactttaaagagc 16840857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 243 - 373
Target Start/End: Complemental strand, 49291335 - 49291205
Alignment:
Q  243 aacaagttagttatgtaagtatttttcataacacttaggtcgtttaagttatttaattgtaactttaggtcccgaataacttgcagttttaagatctgaa 342  Q
    ||||||||||| || ||||||||||| |||||| ||| ||| ||||||||||||||||||||||||    ||||| |||||| || ||| ||||||||||    
T  49291335 aacaagttagtcatttaagtattttttataacatttaagtcttttaagttatttaattgtaacttttaaacccgagtaacttacattttgaagatctgaa 49291236  T
Q  343 atccctcaatttcttacagttaaatagctta 373  Q
    || ||| || || ||||  ||||||| ||||    
T  49291235 attcctgaaattgttacgattaaataactta 49291205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 421 - 513
Target Start/End: Original strand, 33617920 - 33618010
Alignment:
Q  421 ttaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaagacttatggtgtaattta 513  Q
    ||||||||||||||||||||||| ||||||  ||||||||||| || |||||| |||||| ||||||||||||| ||| | | ||||||||||    
T  33617920 ttaattaacttaaaggacctaagcggtacg--aaaaacttaaaggaccaatttattacaattaaataacttaaatgacctcttgtgtaattta 33618010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 258 - 494
Target Start/End: Complemental strand, 20141983 - 20141745
Alignment:
Q  258 taagtatttttcataacacttaggtcgtttaagttatttaattgtaacttt-aggtcccgaataacttgcagttttaagatctgaaat-ccctcaatttc 355  Q
    |||||||||||| |||  |||| ||| |||||||| ||||||||||| ||| ||| ||  |||||||| || ||||||||||| |||| |||  || ||     
T  20141983 taagtatttttcgtaatgcttaagtc-tttaagttgtttaattgtaatttttaggcccataataacttacatttttaagatctaaaatacccaaaaatta 20141885  T
Q  356 ttacagttaaatagcttagaggacctaattggtacgnnnnnnnttaaaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaa 455  Q
    |||| |||||||| |||| | ||||||||| |||||        | || ||||||||||||| ||||||||||| ||||| ||||||||| |||  ||||    
T  20141884 ttacggttaaataacttaaatgacctaattagtacgaataaaacttaaagaccaacttgttacaattaattaacataaagaacctaagtgatacaaaaaa 20141785  T
Q  456 a-acttaaatgatcaatttcttacaactaaataacttaaa 494  Q
    | |||||||  | | | || |||||| |||||||||||||    
T  20141784 agacttaaagaacctacttattacaattaaataacttaaa 20141745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 406 - 494
Target Start/End: Complemental strand, 22889674 - 22889586
Alignment:
Q  406 accaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaa 494  Q
    |||||||||||| |||| |||||||||||||| | ||| |||||  ||||||||| || || |||||| ||| || |||||||||||||    
T  22889674 accaacttgttacaatttattaacttaaaggatcaaagcggtacaaaaaaaactttaaggaccaatttattataattaaataacttaaa 22889586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 406 - 494
Target Start/End: Complemental strand, 22941338 - 22941250
Alignment:
Q  406 accaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaa 494  Q
    |||||||||||| |||| |||||||||||||| | ||| |||||  ||||||||| || || |||||| ||| || |||||||||||||    
T  22941338 accaacttgttacaatttattaacttaaaggatcaaagcggtacaaaaaaaactttaaggaccaatttattataattaaataacttaaa 22941250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 183 - 223
Target Start/End: Original strand, 31095092 - 31095132
Alignment:
Q  183 tatcacttacgtcatttaagttatttaattataacaagtta 223  Q
    ||||||||||||| |||||||||||||||||||||||||||    
T  31095092 tatcacttacgtcctttaagttatttaattataacaagtta 31095132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 419 - 494
Target Start/End: Original strand, 53769786 - 53769861
Alignment:
Q  419 aattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaa 494  Q
    |||||| ||| ||||| ||||||||||||| | |||| ||||||||||| ||||| |||||| ||||||| |||||    
T  53769786 aattaaataatttaaaagacctaagtggtatgaaaaatacttaaatgattaatttattacaattaaataatttaaa 53769861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 409 - 515
Target Start/End: Complemental strand, 2323372 - 2323266
Alignment:
Q  409 aacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaagacttatggtgta 508  Q
    ||||||||| ||||||||||||| || || |||  ||||||  |||||||||||| |   ||||| |||||| ||||||| ||||| ||||| || ||||    
T  2323372 aacttgttacaattaattaacttgaaagaactacatggtaccaaaaaaacttaaagggctaatttgttacaattaaataatttaaaggacttttgatgta 2323273  T
Q  509 atttaac 515  Q
    |||||||    
T  2323272 atttaac 2323266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 426 - 500
Target Start/End: Original strand, 42676809 - 42676883
Alignment:
Q  426 taacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaagactt 500  Q
    ||||||||| |||||||||| |||| ||||||| |||| ||| || || |||||| ||| |||||||||||||||    
T  42676809 taacttaaatgacctaagtgatacgaaaaaaacataaaggattaacttgttacaattaattaacttaaaagactt 42676883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 243 - 308
Target Start/End: Complemental strand, 51580140 - 51580077
Alignment:
Q  243 aacaagttagttatgtaagtatttttcataacacttaggtcgtttaagttatttaattgtaacttt 308  Q
    |||||||||||| | |||||||||||| ||||| ||||||| |||| |||||||||||||||||||    
T  51580140 aacaagttagttct-taagtatttttcgtaacatttaggtc-tttacgttatttaattgtaacttt 51580077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 409 - 492
Target Start/End: Original strand, 34013780 - 34013861
Alignment:
Q  409 aacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataactta 492  Q
    ||||| ||||| |||||||| ||||||||| ||||| ||| | |||||  ||||||||| ||||| |||||| |||||||||||    
T  34013780 aacttattatatttaattaatttaaaggacttaagtagtatgaaaaaa--ttaaatgattaatttgttacaattaaataactta 34013861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 414 - 489
Target Start/End: Complemental strand, 22519448 - 22519373
Alignment:
Q  414 gttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataac 489  Q
    |||| |||||| |||||||||||||||||||| |||| |||| ||||||| ||  || || |||||| ||||||||    
T  22519448 gttacaattaaataacttaaaggacctaagtgttacgaaaaatacttaaaggactaacttgttacaattaaataac 22519373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 400 - 495
Target Start/End: Original strand, 34717567 - 34717660
Alignment:
Q  400 taaaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaa 495  Q
    |||| ||| ||||||||  |||||||||||||||| ||| || ||| |||| ||||||||||||| |  ||||| |||||| ||||||||||||||    
T  34717567 taaaagacaaacttgtttcaattaattaacttaaaagacttaggtgatacg-aaaaaacttaaat-acaaatttattacaattaaataacttaaaa 34717660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 399 - 450
Target Start/End: Original strand, 40070309 - 40070360
Alignment:
Q  399 ttaaaggaccaacttgttataattaattaacttaaaggacctaagtggtacg 450  Q
    |||||||| |||||||||||| |||||||||||||| || ||||||| ||||    
T  40070309 ttaaaggatcaacttgttatatttaattaacttaaatgatctaagtgatacg 40070360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 409 - 463
Target Start/End: Complemental strand, 31095131 - 31095078
Alignment:
Q  409 aacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaa 463  Q
    |||||||||||||||| ||||||||||||| |||||| || | ||||||||||||    
T  31095131 aacttgttataattaaataacttaaaggacgtaagtgatatg-aaaaaacttaaa 31095078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 258 - 300
Target Start/End: Complemental strand, 53769828 - 53769786
Alignment:
Q  258 taagtatttttcataacacttaggtcgtttaagttatttaatt 300  Q
    ||||||||||||||| |||||||||| ||||| ||||||||||    
T  53769828 taagtatttttcataccacttaggtcttttaaattatttaatt 53769786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 399 - 440
Target Start/End: Complemental strand, 22519354 - 22519313
Alignment:
Q  399 ttaaaggaccaacttgttataattaattaacttaaaggacct 440  Q
    ||||||||||| | |||||||||||| |||||||||||||||    
T  22519354 ttaaaggaccagcatgttataattaactaacttaaaggacct 22519313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 402 - 463
Target Start/End: Complemental strand, 48194239 - 48194179
Alignment:
Q  402 aaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaa 463  Q
    |||||||||||||||| | |||| ||||||||||  | ||||||||||| ||||||||||||    
T  48194239 aaggaccaacttgttacagttaagtaacttaaagagcgtaagtggtacg-aaaaaacttaaa 48194179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0591 (Bit Score: 66; Significance: 9e-29; HSPs: 1)
Name: scaffold0591
Description:

Target: scaffold0591; HSP #1
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 377 - 515
Target Start/End: Original strand, 3866 - 4003
Alignment:
Q  377 gacctaattggtacgnnnnnnnttaaaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttctt 476  Q
    |||||||||||||||       ||||||||||||||||||| ||| ||||||||||||| |||| ||||||| | ||| |||||||||||||||||| ||    
T  3866 gacctaattggtacgaaaaaacttaaaggaccaacttgttacaatcaattaacttaaag-acctcagtggtaggaaaataacttaaatgatcaatttatt 3964  T
Q  477 acaactaaataacttaaaagacttatggtgtaatttaac 515  Q
    |||| |||||||| |||| ||||| ||||||||||||||    
T  3965 acaattaaataacataaatgacttctggtgtaatttaac 4003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 63; Significance: 6e-27; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 408 - 494
Target Start/End: Original strand, 2277209 - 2277295
Alignment:
Q  408 caacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaa 494  Q
    |||||||||| |||||||||||||||||||||||||||||||  |||||||||||| ||||||||| |||||| |||||||||||||    
T  2277209 caacttgttacaattaattaacttaaaggacctaagtggtacaaaaaaaacttaaaggatcaatttgttacaattaaataacttaaa 2277295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 415 - 495
Target Start/End: Complemental strand, 27533069 - 27532989
Alignment:
Q  415 ttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaa 495  Q
    |||||||||| ||||||||||||| |||||||||| ||||||||||||| ||||||||| |||||| ||||||||||||||    
T  27533069 ttataattaaataacttaaaggacgtaagtggtacataaaaaacttaaaagatcaatttattacaattaaataacttaaaa 27532989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 399 - 478
Target Start/End: Original strand, 37064689 - 37064768
Alignment:
Q  399 ttaaaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttac 478  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||| || ||||||||||| |||| ||||| ||||    
T  37064689 ttaaaggaccaacttgttataattaattaacttaaaggacttaagtggtgcgaaaaaaacttaattgattaatttattac 37064768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 411 - 513
Target Start/End: Complemental strand, 15907790 - 15907689
Alignment:
Q  411 cttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaagacttatggtgtaat 510  Q
    ||||||||||||||||||||||||| |  ||||||||||| |||||||||||| || |||||| | |||| ||||||||||||| || || |||||||||    
T  15907790 cttgttataattaattaacttaaagaatataagtggtacgaaaaaaacttaaa-gaccaatttatcacaagtaaataacttaaaggatttctggtgtaat 15907692  T
Q  511 tta 513  Q
    |||    
T  15907691 tta 15907689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 399 - 513
Target Start/End: Original strand, 15907944 - 15908058
Alignment:
Q  399 ttaaaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaagac 498  Q
    |||||||| |||||||||||||||||||||| ||||  |||||||||||| | ||||||||||||| |  ||||| |||||  |||||| |||||| ||     
T  15907944 ttaaaggatcaacttgttataattaattaacctaaaaaacctaagtggtatgaaaaaaacttaaataactaatttattacagttaaatatcttaaaggat 15908043  T
Q  499 ttatggtgtaattta 513  Q
    || ||||||||||||    
T  15908044 ttttggtgtaattta 15908058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 243 - 495
Target Start/End: Complemental strand, 2510263 - 2510015
Alignment:
Q  243 aacaagttagttatgtaagtatttttcataacacttaggtcgtttaagttatttaattgtaactttaggtcc-cgaataacttgcagttttaagatctga 341  Q
    |||||||||||| | ||| |||||||  |||||||||| || |||||||||||||| ||||| |||  | || |||||||||| || |||||| || |||    
T  2510263 aacaagttagttctttaattattttttgtaacacttagctcctttaagttatttaagtgtaatttttagaccacgaataacttacatttttaaaatatga 2510164  T
Q  342 aatccctcaatttcttacagttaaatagcttagaggacctaattggtacgnnnnnnnttaaaggaccaacttgttataattaattaacttaaaggaccta 441  Q
    |||| ||||| || || || |||| || |||| |||| |||||| |||||       |||||||| ||| |||||  |||||||||||||    ||||||    
T  2510163 aatctctcaaattgttgcaattaagtaacttaaaggatctaatttgtacggaaaaacttaaaggaacaatttgttgcaattaattaactt----gaccta 2510068  T
Q  442 agtggtacgtaaaaaa-cttaaatgatcaatttcttacaactaaataacttaaaa 495  Q
    ||||||| | |||||| | ||||  | |||||| |||||| ||||||||||||||    
T  2510067 agtggtatgaaaaaaaacataaa--accaatttattacaattaaataacttaaaa 2510015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 431 - 513
Target Start/End: Original strand, 12807666 - 12807748
Alignment:
Q  431 taaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaagacttatggtgtaattta 513  Q
    |||||||||||||||||| |||||||| |||||  |||||||| | |||| ||||||||||||||||  | ||||||||||||    
T  12807666 taaaggacctaagtggtatgtaaaaaatttaaaaaatcaatttataacaattaaataacttaaaagatctctggtgtaattta 12807748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 243 - 373
Target Start/End: Original strand, 3806871 - 3807000
Alignment:
Q  243 aacaagttagttatgtaagtatttttcataacacttaggtcgtttaagttatttaattgtaactttaggtcccgaataacttgcagttttaagatctgaa 342  Q
    ||||||||||| || |||||||||||| || |||||||||| ||| | |||||||||| ||| |||  | || || |||||| || ||||||||| ||||    
T  3806871 aacaagttagtcatttaagtatttttcgtagcacttaggtccttttaattatttaattataatttttagccctgagtaacttacatttttaagatatgaa 3806970  T
Q  343 atccctcaatttcttacagttaaatagctta 373  Q
    ||  ||||| || ||||||||||||| ||||    
T  3806971 atatctcaa-ttgttacagttaaataactta 3807000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 183 - 228
Target Start/End: Original strand, 18080600 - 18080645
Alignment:
Q  183 tatcacttacgtcatttaagttatttaattataacaagttagttat 228  Q
    |||||||||||||||||||||||||||||| ||| |||||||||||    
T  18080600 tatcacttacgtcatttaagttatttaattgtaataagttagttat 18080645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 402 - 498
Target Start/End: Original strand, 32566875 - 32566969
Alignment:
Q  402 aaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaagac 498  Q
    |||||| | ||||||| ||||||| |||||||| ||||||| | |||| |||||  | |||| ||||||||||||| ||  ||||||||||||||||    
T  32566875 aaggactagcttgttacaattaataaacttaaatgacctaaatagtacataaaa--cctaaaggatcaatttcttataataaaataacttaaaagac 32566969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 408 - 496
Target Start/End: Original strand, 2967707 - 2967794
Alignment:
Q  408 caacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaag 496  Q
    ||||||||||||||||||||| |||||||| |||||| | | | ||||||||||||  | |||||| |||  | |||||||||||||||    
T  2967707 caacttgttataattaattaatttaaaggatctaagtagaaggaaaaaaacttaaa-aaacaatttgttaggattaaataacttaaaag 2967794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 399 - 494
Target Start/End: Original strand, 3806998 - 3807091
Alignment:
Q  399 ttaaaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaa 494  Q
    |||||| || ||||||||| |||||||||||||||| ||| ||||| |||  ||||||||||| | || |||||| |||| | ||||||| |||||    
T  3806998 ttaaagtactaacttgttaaaattaattaacttaaaagacataagttgta--taaaaaacttagaggaccaatttgttactattaaataatttaaa 3807091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 258 - 390
Target Start/End: Complemental strand, 12190002 - 12189869
Alignment:
Q  258 taagtatttttcataacacttaggtcgtttaagttatttaattgtaacttt-aggtcccgaataacttgcagttttaagatctgaaatccc-tcaatttc 355  Q
    ||||||||||   ||||||||||||  ||||| |||||||||||||||||| ||  ||| |||| ||| |  ||| |||||||||||| || | |||||     
T  12190002 taagtattttctgtaacacttaggttctttaatttatttaattgtaacttttagacccctaatatcttacgttttcaagatctgaaattccgttaatttg 12189903  T
Q  356 ttacagttaaatagcttagaggacctaattggtac 390  Q
    | ||||||||||| |||| | ||||||||||||||    
T  12189902 t-acagttaaataacttaaatgacctaattggtac 12189869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 258 - 390
Target Start/End: Complemental strand, 12434430 - 12434297
Alignment:
Q  258 taagtatttttcataacacttaggtcgtttaagttatttaattgtaacttt-aggtcccgaataacttgcagttttaagatctgaaatccc-tcaatttc 355  Q
    ||||||||||   ||||||||||||  ||||| |||||||||||||||||| ||  ||| |||| ||| |  ||| |||||||||||| || | |||||     
T  12434430 taagtattttctgtaacacttaggttctttaatttatttaattgtaacttttagacccctaatatcttacgttttcaagatctgaaattccgttaatttg 12434331  T
Q  356 ttacagttaaatagcttagaggacctaattggtac 390  Q
    | ||||||||||| |||| | ||||||||||||||    
T  12434330 t-acagttaaataacttaaatgacctaattggtac 12434297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 408 - 478
Target Start/End: Original strand, 45445141 - 45445210
Alignment:
Q  408 caacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttac 478  Q
    ||||||||||| ||||| ||| ||| ||||||||| ||||||| |||||||||||| || |||||| ||||    
T  45445141 caacttgttatgattaaataatttacaggacctaattggtacg-aaaaaacttaaacgaccaatttattac 45445210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 425 - 517
Target Start/End: Original strand, 41123 - 41216
Alignment:
Q  425 ttaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaaga-cttatggtgtaatttaacat 517  Q
    ||||||||||  || ||||||||||  |||||||||||| ||  ||||| |||||| ||||||| ||||| || ||  ||||||||||||||||    
T  41123 ttaacttaaataacataagtggtacacaaaaaacttaaaggactaatttgttacaattaaataatttaaaggatctcttggtgtaatttaacat 41216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 244 - 308
Target Start/End: Original strand, 8453098 - 8453163
Alignment:
Q  244 acaagttagttatgtaagtatttttcataacacttaggt-cgtttaagttatttaattgtaacttt 308  Q
    |||||||||| || ||||||||| ||||||||||||  | | |||||||||||| |||||||||||    
T  8453098 acaagttagtcatttaagtatttctcataacacttacatccttttaagttatttgattgtaacttt 8453163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 421 - 466
Target Start/End: Complemental strand, 32566769 - 32566724
Alignment:
Q  421 ttaattaacttaaaggacctaagtggtacgtaaaaaacttaaatga 466  Q
    |||| ||||||||||||| ||||||| ||| |||||||||||||||    
T  32566769 ttaaataacttaaaggacttaagtggcacgaaaaaaacttaaatga 32566724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 59; Significance: 1e-24; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 258 - 494
Target Start/End: Complemental strand, 363853 - 363615
Alignment:
Q  258 taagtatttttcataacacttaggtcgtttaagttatttaattgtaac-tttaggtcccgaataacttgcagttttaagatctgaaat-ccctcaatttc 355  Q
    |||||||||||| |||  |||| ||| |||||||| |||||||||||| |||||| || ||||||||| || ||||||||||| |||| |||  || ||     
T  363853 taagtatttttcgtaatgcttaagtcatttaagttgtttaattgtaacttttaggcccagaataacttacatttttaagatctaaaatacccaaaaattg 363754  T
Q  356 ttacagttaaatagcttagaggacctaattggtacgnnnnnnnttaaaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaa 455  Q
    |||| |||||||| |||| | ||||||||| |||||       ||||| ||||||||||||| ||||||||||| ||||| ||||||||| |||  ||||    
T  363753 ttacggttaaataacttaaatgacctaattagtacgaaaaaacttaaa-gaccaacttgttacaattaattaacataaagaacctaagtgatacaaaaaa 363655  T
Q  456 a-acttaaatgatcaatttcttacaactaaataacttaaa 494  Q
    | |||||||  | | |||| |||||| |||||||||||||    
T  363654 agacttaaagaacctatttattacaattaaataacttaaa 363615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 258 - 493
Target Start/End: Original strand, 47726457 - 47726693
Alignment:
Q  258 taagtatttttcataacacttaggtcgtttaagttatttaattgtaac-tttaggtcccgaataacttgcagttttaagatctgaaatccctcaatttct 356  Q
    |||||||| ||  ||||||||||||  ||||||||||||||||||||| ||||| |||||||||||||||| ||||||||| |||||| |||||| || |    
T  47726457 taagtattgtttgtaacacttaggtgctttaagttatttaattgtaacttttagatcccgaataacttgcatttttaagatatgaaattcctcaaattgt 47726556  T
Q  357 tacagttaaatagcttagaggacctaattggtac-gnnnnnnnttaaaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaa 455  Q
    ||  || ||||| |  | |||||||  |||||||         ||||||||||| ||||||  |  ||||||||||||| |||||||||| || | ||||    
T  47726557 taaggtaaaataacacaaaggaccttgttggtacaagaaaaacttaaaggaccatcttgttcgagctaattaacttaaatgacctaagtgatatgaaaaa 47726656  T
Q  456 aacttaaatgatcaatttcttacaactaaataacttaa 493  Q
    ||||||||| | |||||| ||||||  |||||||||||    
T  47726657 aacttaaat-accaatttattacaataaaataacttaa 47726693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 258 - 493
Target Start/End: Original strand, 47747763 - 47747999
Alignment:
Q  258 taagtatttttcataacacttaggtcgtttaagttatttaattgtaac-tttaggtcccgaataacttgcagttttaagatctgaaatccctcaatttct 356  Q
    |||||||| ||  ||||||||||||  ||||||||||||||||||||| ||||| |||||||||||||||| ||||||||| |||||| |||||| || |    
T  47747763 taagtattgtttgtaacacttaggtgctttaagttatttaattgtaacttttagatcccgaataacttgcatttttaagatatgaaattcctcaaattgt 47747862  T
Q  357 tacagttaaatagcttagaggacctaattggtac-gnnnnnnnttaaaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaa 455  Q
    ||  || ||||| |  | |||||||  |||||||         ||||||||||| ||||||  |  ||||||||||||| |||||||||| || | ||||    
T  47747863 taaggtaaaataacacaaaggaccttgttggtacaagaaaaacttaaaggaccatcttgttcgagctaattaacttaaatgacctaagtgatatgaaaaa 47747962  T
Q  456 aacttaaatgatcaatttcttacaactaaataacttaa 493  Q
    ||||||||| | |||||| ||||||  |||||||||||    
T  47747963 aacttaaat-accaatttattacaataaaataacttaa 47747999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 402 - 495
Target Start/End: Complemental strand, 16554396 - 16554303
Alignment:
Q  402 aaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaa 495  Q
    |||||||||||||||| |||| ||||||||||| ||| ||||||||||  |||||||||||| || |||||| |||||| ||||||||||||||    
T  16554396 aaggaccaacttgttacaattgattaacttaaatgacttaagtggtaccaaaaaaacttaaaggaccaatttattacaattaaataacttaaaa 16554303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 259 - 389
Target Start/End: Complemental strand, 29955000 - 29954870
Alignment:
Q  259 aagtatttttcataacacttaggtcgtttaagttatttaattgtaactttaggtccc-gaataacttgcagttttaagatctgaaatccctcaatttctt 357  Q
    ||||||||| | || |||||||||| ||||||||||||||||||||||||  ||||| ||||||||| || ||||||||| |||||| |  ||| || ||    
T  29955000 aagtattttccgtaccacttaggtc-tttaagttatttaattgtaacttttagtcccagaataacttacatttttaagatatgaaattctccaaattatt 29954902  T
Q  358 acagttaaatagcttagaggacctaattggta 389  Q
    || |||||||| |||| |||||||||||||||    
T  29954901 acggttaaataacttaaaggacctaattggta 29954870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 405 - 494
Target Start/End: Complemental strand, 18470279 - 18470189
Alignment:
Q  405 gaccaacttgttataattaattaacttaaaggacctaagtggtacg-taaaaaacttaaatgatcaatttcttacaactaaataacttaaa 494  Q
    ||||||||||||| | |||| |||||||||||||||||| ||||||  ||||||| ||||||||||| || |||||| |||||||||||||    
T  18470279 gaccaacttgttacagttaaataacttaaaggacctaagaggtacgaaaaaaaacgtaaatgatcaacttattacaattaaataacttaaa 18470189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 399 - 494
Target Start/End: Original strand, 802251 - 802346
Alignment:
Q  399 ttaaaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaa 494  Q
    ||||||||||||||||||| |||||||||| | ||||||  ||||||||||| |||||  ||||| || |||||| |||||  |||||||||||||    
T  802251 ttaaaggaccaacttgttacaattaattaattcaaaggatataagtggtacgaaaaaagtttaaaggaccaatttattacatttaaataacttaaa 802346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 406 - 513
Target Start/End: Original strand, 12656368 - 12656474
Alignment:
Q  406 accaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaagacttatggt 505  Q
    |||||||| ||| ||||||||||||||||||   ||||||||||| |||||| |||||  |||||| | |||||| ||||||||||||| |||||  |||    
T  12656368 accaacttattacaattaattaacttaaagggtttaagtggtacg-aaaaaatttaaaaaatcaatatgttacaattaaataacttaaaggactttcggt 12656466  T
Q  506 gtaattta 513  Q
    ||||||||    
T  12656467 gtaattta 12656474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 408 - 494
Target Start/End: Complemental strand, 16026194 - 16026108
Alignment:
Q  408 caacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaa 494  Q
    |||||| ||| | |||| |||||||||||||||||| |||||| ||||||  |||||||| || || |||||| |||||||||||||    
T  16026194 caacttattacagttaaataacttaaaggacctaagaggtacgaaaaaaatgtaaatgattaacttattacaattaaataacttaaa 16026108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 319 - 515
Target Start/End: Original strand, 11016877 - 11017075
Alignment:
Q  319 taacttgcagttttaagatctgaaatccctcaatttcttacagttaaatagcttagaggacctaattggtacgnnnnnnn--ttaaaggaccaacttgtt 416  Q
    |||||| || ||||||||| | ||||| ||||| || |||| ||||||||| ||| ||||||||||||| |||         |||||| | |||||||||    
T  11016877 taacttacatttttaagattttaaatctctcaaattgttacggttaaatagtttaaaggacctaattggaacgaaaaacaacttaaag-atcaacttgtt 11016975  T
Q  417 ataattaattaacttaaaggacctaagtggtacgtaaaaaacttaa-atgatcaatttcttacaactaaataacttaaaagacttatggtgtaatttaac 515  Q
    | |||||| |||||||||  ||||||||| || | ||||||  ||| | ||| ||||| ||| || ||||||||||||| ||| ||| ||||||||||||    
T  11016976 acaattaaataacttaaaacacctaagtgatatgcaaaaaaaataagaagattaatttattataattaaataacttaaaggacatatagtgtaatttaac 11017075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 258 - 324
Target Start/End: Original strand, 26706207 - 26706274
Alignment:
Q  258 taagtatttttcataacacttaggtcgtttaagttatttaattgtaac-tttaggtcccgaataactt 324  Q
    |||||| ||||| ||||||||||||  ||||||||||||||||||||| |||||| | ||||||||||    
T  26706207 taagtagttttcgtaacacttaggttctttaagttatttaattgtaacttttaggcctcgaataactt 26706274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 399 - 494
Target Start/End: Complemental strand, 46530258 - 46530163
Alignment:
Q  399 ttaaaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaa 494  Q
    ||||||| | ||||||||| |||||||||||||||| |||||||||||| || |||| | |||||  | || ||| | |||| |||||||||||||    
T  46530258 ttaaagggcaaacttgttacaattaattaacttaaaagacctaagtggtgcgaaaaagaattaaagaaccagtttgtgacaattaaataacttaaa 46530163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 406 - 463
Target Start/End: Complemental strand, 48130268 - 48130213
Alignment:
Q  406 accaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaa 463  Q
    |||||||||||| |||||||||||||||| || |||||||||||  ||||||||||||    
T  48130268 accaacttgttacaattaattaacttaaatgatctaagtggtac--aaaaaacttaaa 48130213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 411 - 500
Target Start/End: Original strand, 48130428 - 48130516
Alignment:
Q  411 cttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaagactt 500  Q
    ||||||| || ||||||||||||| ||||||| |||||   | ||||||||||| |||||||| |||||| ||||||| ||||| |||||    
T  48130428 cttgttacaagtaattaacttaaaagacctaaatggtaaa-agaaaacttaaataatcaatttattacaattaaataatttaaaggactt 48130516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 414 - 513
Target Start/End: Original strand, 363806 - 363906
Alignment:
Q  414 gttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaag-acttatggtgtaattt 512  Q
    |||| ||||||  |||||||| ||| ||||   |||| |||| ||||||||||  |||||||||||| ||||||||||||||| || | |||||||||||    
T  363806 gttacaattaaacaacttaaatgacttaagcattacgaaaaatacttaaatgacaaatttcttacaattaaataacttaaaagaacatctggtgtaattt 363905  T
Q  513 a 513  Q
    |    
T  363906 a 363906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 399 - 478
Target Start/End: Original strand, 26706353 - 26706432
Alignment:
Q  399 ttaaaggaccaacttgttataattaattaactt-aaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttac 478  Q
    ||||||||| ||||||| ||||||||||||||| ||||||| ||| || |||| ||||||||||||  |||||||| ||||    
T  26706353 ttaaaggacaaacttgtaataattaattaacttaaaaggacttaaatgatacg-aaaaaacttaaagaatcaatttattac 26706432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 411 - 513
Target Start/End: Original strand, 46530411 - 46530517
Alignment:
Q  411 cttgttataattaattaacttaaaggacctaagtggtacgtaaaaaa---cttaaat-gatcaatttcttacaactaaataacttaaaagacttatggtg 506  Q
    ||||||| |||||||||||||||| ||| | ||||||||| ||||||   ||||||  || |||||| |||||| ||||||||| ||| ||| | |||||    
T  46530411 cttgttacaattaattaacttaaatgacgtgagtggtacgaaaaaaaaaacttaaaaagagcaatttgttacaaataaataactaaaatgacatctggtg 46530510  T
Q  507 taattta 513  Q
    |||||||    
T  46530511 taattta 46530517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 535 - 601
Target Start/End: Original strand, 2125101 - 2125168
Alignment:
Q  535 tttttgtatggttcttaactaaact-acaaaaatttctttaaatttataattttttcaaagtttgtta 601  Q
    |||| |||||||||||||||||| | || |  |||| ||||||||||||||||| |||||||||||||    
T  2125101 ttttcgtatggttcttaactaaattcaccatgatttttttaaatttataattttctcaaagtttgtta 2125168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 258 - 304
Target Start/End: Complemental strand, 18470430 - 18470384
Alignment:
Q  258 taagtatttttcataacacttaggtcgtttaagttatttaattgtaa 304  Q
    |||||||||||||||  |||||| || ||||||||||||||||||||    
T  18470430 taagtatttttcatacaacttagatcctttaagttatttaattgtaa 18470384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 402 - 463
Target Start/End: Original strand, 16026346 - 16026406
Alignment:
Q  402 aaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaa 463  Q
    |||||||||||||||| |||||| ||||||||||  | ||||| ||||| ||||||||||||    
T  16026346 aaggaccaacttgttacaattaagtaacttaaagagcgtaagttgtacg-aaaaaacttaaa 16026406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 406 - 463
Target Start/End: Original strand, 18470439 - 18470495
Alignment:
Q  406 accaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaa 463  Q
    |||||||||||| |||||| ||||||||||  | ||||||||||| ||||||||||||    
T  18470439 accaacttgttacaattaagtaacttaaagagcgtaagtggtacg-aaaaaacttaaa 18470495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 243 - 391
Target Start/End: Original strand, 47600499 - 47600648
Alignment:
Q  243 aacaagttagttatgtaagtatttttcataacacttaggtcgtttaagttatttaattgtaac-tttaggtcccgaataacttgcagttttaagatctga 341  Q
    ||||| ||||| || |||||||||||| |||  |||||||| ||  |||| |||||||||||| |||||| ||| ||| ||||  | |||||| ||||||    
T  47600499 aacaaattagtcatttaagtatttttcgtaatgcttaggtctttcgagttgtttaattgtaacttttaggacccaaattacttcaatttttaacatctga 47600598  T
Q  342 aatccctcaatttcttacagttaaatagcttagaggacctaattggtacg 391  Q
    ||| || |||  | ||||  ||||||| |||| | |||| ||||||||||    
T  47600599 aataccacaaacttttacgattaaataacttaaatgaccaaattggtacg 47600648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 5e-21; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 255 - 490
Target Start/End: Complemental strand, 30534666 - 30534432
Alignment:
Q  255 atgtaagtatttttcataacacttaggtcgtttaagttatttaattgtaactt-taggtcccgaataacttgcagttttaagatctgaaatccctcaatt 353  Q
    ||||||||||||||| ||| ||||||||| ||||| ||||||||||||||||| |||| ||| |||||||| || ||||||||||| |||   ||||| |    
T  30534666 atgtaagtatttttcgtaagacttaggtcttttaaattatttaattgtaacttgtaggccccaaataacttacatttttaagatctaaaacatctcaaat 30534567  T
Q  354 tcttacagttaaatagcttagaggacctaattggtacgnnnnnnnttaaaggaccaacttgttataattaattaacttaaaggacctaagtggtac-gta 452  Q
    | ||||||||||||| |||| | || ||| ||||||||        | || || |||||| ||| ||||||||||| |||| |||||||| |||||   |    
T  30534566 tgttacagttaaataactta-aagagctagttggtacggaaaaaacttaaagagcaactttttacaattaattaacataaa-gacctaagcggtacaaaa 30534469  T
Q  453 aaaaacttaaatgatcaatttcttacaactaaataact 490  Q
    ||||||||||| || |||||| |||||| |||||||||    
T  30534468 aaaaacttaaaagaccaattt-ttacaattaaataact 30534432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 258 - 494
Target Start/End: Original strand, 51265744 - 51265984
Alignment:
Q  258 taagtatttttcataacacttaggtcgtttaagttatttaattgtaacttt-aggtcccgaataacttgcagttttaagatctgaaatccctcaatttct 356  Q
    |||||||||||||||  |||||| || |||||||||||||||||||| ||| | | |  ||| |||||  | ||||||||||||||||| ||||| || |    
T  51265744 taagtatttttcatacaacttagatcctttaagttatttaattgtaaatttcaagccttgaaaaacttaaatttttaagatctgaaatctctcaaattgt 51265843  T
Q  357 tacagttaaatagcttagaggacctaattggtacgnnnnnnn---ttaaaggaccaacttgttataattaattaacttaaaggacctaagtggtacg-ta 452  Q
    ||| |||||||| |||| | ||| ||| || ||||          ||||  ||||||||||||||| |||| |||||||||||| ||||| ||||||  |    
T  51265844 tacggttaaataacttaaaagac-taagtgatacgggaaaaaaacttaacagaccaacttgttatagttaaataacttaaaggatctaagaggtacgaaa 51265942  T
Q  453 aaaaacttaaatgatcaatttcttacaactaaataacttaaa 494  Q
    |||||| ||||||||||| || |||||| |||||||||||||    
T  51265943 aaaaacgtaaatgatcaacttattacaattaaataacttaaa 51265984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 306 - 463
Target Start/End: Complemental strand, 44291182 - 44291025
Alignment:
Q  306 tttaggtcccgaataacttgcagttttaagatctgaaatccctcaatttcttacagttaaatagcttagaggacctaattggtacgnnnnnnn-ttaaag 404  Q
    ||||||||||||||||||| || ||||||||||| |||||||  || || |||| |||||||| |||| || ||||  ||||||||        |||||     
T  44291182 tttaggtcccgaataacttacatttttaagatctaaaatccccaaaattgttacggttaaataacttaaag-accttgttggtacggaaaaaacttaaaa 44291084  T
Q  405 gaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaa 463  Q
    | ||||||||||| || ||||||||||||| ||| ||||||||||| ||||||||||||    
T  44291083 ggccaacttgttacaactaattaacttaaatgacttaagtggtacgaaaaaaacttaaa 44291025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 399 - 495
Target Start/End: Original strand, 44291413 - 44291509
Alignment:
Q  399 ttaaaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaa 495  Q
    ||||||||| ||||||||| |||||| ||||||||||||| |||||| |||  |||||| ||| | || |||||| |||||| ||||||||||||||    
T  44291413 ttaaaggactaacttgttacaattaaataacttaaaggacataagtgatactaaaaaaatttagaggaccaatttgttacaattaaataacttaaaa 44291509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 409 - 513
Target Start/End: Original strand, 48200367 - 48200471
Alignment:
Q  409 aacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaagacttatggtgta 508  Q
    ||||| ||| ||| |||||| ||||| ||| |||| |||||| |||||| ||||||||||||||  |||||| ||||||| |||||||| || | |||||    
T  48200367 aacttattacaatcaattaatttaaaagacttaagcggtacgaaaaaaaattaaatgatcaattctttacaattaaataagttaaaagatttctagtgta 48200466  T
Q  509 attta 513  Q
    |||||    
T  48200467 attta 48200471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 402 - 463
Target Start/End: Complemental strand, 51265739 - 51265679
Alignment:
Q  402 aaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaa 463  Q
    |||||||||||||||| |||||| ||||||||||  | ||||||||||| ||||||||||||    
T  51265739 aaggaccaacttgttacaattaagtaacttaaagagcgtaagtggtacg-aaaaaacttaaa 51265679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 225
Target Start/End: Complemental strand, 44291463 - 44291420
Alignment:
Q  182 gtatcacttacgtcatttaagttatttaattataacaagttagt 225  Q
    |||||||||| ||| |||||||||||||||| ||||||||||||    
T  44291463 gtatcacttatgtcctttaagttatttaattgtaacaagttagt 44291420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 258 - 324
Target Start/End: Original strand, 50898882 - 50898948
Alignment:
Q  258 taagtatttttcataacacttaggtcgtttaagttatttaattgtaac-tttaggtcccgaataactt 324  Q
    |||||||||||| ||||||||||||  |||||||| |||||||||||| |||| ||| ||||||||||    
T  50898882 taagtatttttcgtaacacttaggt-atttaagttgtttaattgtaacttttacgtctcgaataactt 50898948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 412 - 513
Target Start/End: Original strand, 1662257 - 1662357
Alignment:
Q  412 ttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaagacttatggtgtaatt 511  Q
    |||||| ||||||||||| ||| ||| ||||||||||   |||||||||||| ||||||||| || ||| ||||||  ||||| ||| | || |||||||    
T  1662257 ttgttacaattaattaacataatggatctaagtggtata-aaaaaacttaaaagatcaatttattgcaattaaatactttaaaggacctctgatgtaatt 1662355  T
Q  512 ta 513  Q
    ||    
T  1662356 ta 1662357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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