View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8911_low_60 (Length: 407)
Name: NF8911_low_60
Description: NF8911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8911_low_60 |
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Alignment Details
Target: chr1 (Bit Score: 361; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 20 - 396
Target Start/End: Complemental strand, 46441354 - 46440978
Alignment:
| Q |
20 |
catagccctgtgataattcagttgttcaatgatatccttaaaagctctaacacatacatcattgatgaacttggtgatgccattgatcacttcgaggcgt |
119 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
46441354 |
catagccctgtgataattcagttgttcaatgatatccgtaaaagctctaacacatacatcattgatgaacttggtgatgtcattgatcacttcgaggcgt |
46441255 |
T |
|
| Q |
120 |
ttttcatggaaaaacttgagtgtcacatttctacgcaagatgtgttgaatcaatggcaaatttgattcgagtacataaacgttagggcaatgagaactct |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
46441254 |
ttttcatggaaaaacttgagtgtcacatttctacgcaagatgtgttgaatcaatggcaaatttgattcgtgtacataaacgttagggcaatgagaactct |
46441155 |
T |
|
| Q |
220 |
ctatgaaattaaggatgacaacaacctcatcagcaaggttgtttagcattatgtccgaccaatgtgaaagaatatttgctactaaattaccatctttact |
319 |
Q |
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| T |
46441154 |
ctaggaaattaaggatgacaacaacctcatcagcaaggttgtttagcattatgtccgaccaatgtgaaagaatatttgctactaaattaccatctttact |
46441055 |
T |
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| Q |
320 |
tatccactcaatccacatcaagaaagccattacatttatcgattgaaaagcctcacggccaagccccaccaccaaac |
396 |
Q |
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| T |
46441054 |
tatccactcaatccacatcaagaaagccattacatttatcgattgaaaagcctcacggccaagccccaccaccaaac |
46440978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 32 - 308
Target Start/End: Original strand, 18331305 - 18331581
Alignment:
| Q |
32 |
ataattcagttgttcaatgatatccttaaaagctctaacacatacatcattgatgaacttggtgatgccattgatcacttcgaggcgtttttcatggaaa |
131 |
Q |
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| T |
18331305 |
ataattcattttttcaataatatctgtaaaagctctaacacatacatcattgatgatcttggtgacaccagtgatcacttcgaggcgtttttcatggaaa |
18331404 |
T |
|
| Q |
132 |
aacttgagtgtcacatttctacgcaagatgtgttgaatcaatggcaaatttgattcgagtacataaacgttagggcaatgagaactctctatgaaattaa |
231 |
Q |
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|||| || |||||||| ||| |||||||||||||||||||||| || |||| | |||| || ||||||| |||| |||||| | ||| |||| | |
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| T |
18331405 |
aactcaagcgtcacattgaaacgacagatgtgttgaatcaatggcaacttcgatttgcctacaaaagtgttagggtaatgggaactcccaatgcaattca |
18331504 |
T |
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| Q |
232 |
ggatgacaacaacctcatcagcaaggttgtttagcattatgtccgaccaatgtgaaagaatatttgctactaaatta |
308 |
Q |
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| T |
18331505 |
ggatgacaacagcctcgtcagcaaggttgctaagcataacatccgaccattgttgaagaatctttgctactaaatta |
18331581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 41 - 363
Target Start/End: Complemental strand, 17616537 - 17616215
Alignment:
| Q |
41 |
ttgttcaatgatatccttaaaagctctaacacatacatcattgatgaacttggtgatgccattgatcacttcgaggcgtttttcatggaaaaacttgagt |
140 |
Q |
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||||||||| ||||| |||||||||||| ||| |||| ||| |||||||| |||| || |||||| ||||||||||||||||||||||| | | |
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| T |
17616537 |
ttgttcaattatatctgtaaaagctctaatacagacattattaatgaactttgtgacatcaatgatcagctcgaggcgtttttcatggaaaaattcaaaa |
17616438 |
T |
|
| Q |
141 |
gtcacatttctacgcaagatgtgttgaatcaatggcaaatttgattcgagtacataaacgttagggcaatgagaactctctatgaaattaaggatgacaa |
240 |
Q |
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| T |
17616437 |
gtcacattgcgacgcatgatttgttgaatcaatagcaacttatttttccttaaaaaagagttagggtatcgagaactctcaatgcaattaaggattacaa |
17616338 |
T |
|
| Q |
241 |
caacctcatcagcaaggttgtttagcattatgtccgaccaatgtgaaagaatatttgctactaaattaccatctttacttatccactcaatccacatcaa |
340 |
Q |
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||| |||||||||||| || ||||||| | | | ||||||| |||| |||||||||| ||||| | ||||||| | | |||||||| ||||| |
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| T |
17616337 |
caaactcatcagcaagactgcttagcatgacattaggccaatgttgaagagtatttgctaccaaattgaattgtttactttttctttcaatccaaatcaa |
17616238 |
T |
|
| Q |
341 |
gaaagccattacatttatcgatt |
363 |
Q |
| |
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||||||||||||| |||| |||| |
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| T |
17616237 |
gaaagccattacacttattgatt |
17616215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 42 - 363
Target Start/End: Original strand, 722669 - 722990
Alignment:
| Q |
42 |
tgttcaatgatatccttaaaagctctaacacatacatcattgatgaacttggtgatgccattgatcacttcgaggcgtttttcatggaaaaacttgagtg |
141 |
Q |
| |
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|||||||| ||||| |||| ||||||| |||||| ||||||||| |||| |||| || |||||| |||||||||||||||||||||||||| || | |
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| T |
722669 |
tgttcaataatatctgtaaacgctctaatacatacttcattgatgtactttgtgacatcagtgatcaattcgaggcgtttttcatggaaaaactcgaacg |
722768 |
T |
|
| Q |
142 |
tcacatttctacgcaagatgtgttgaatcaatggcaaatttgattcgagtacataaacgttagggcaatgagaactctctatgaaattaaggatgacaac |
241 |
Q |
| |
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|| |||| |||| ||||||||||||||||| || || ||| |||| || | |||||| | |||||||| | ||| ||| |||||||| || |
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| T |
722769 |
tcgcattgtggtgcaatatgtgttgaatcaatggtaatttcttttcccttacacaatcattagggtatggagaactcacaatgcaatcaaggatgaagac |
722868 |
T |
|
| Q |
242 |
aacctcatcagcaaggttgtttagcattatgtccgaccaatgtgaaagaatatttgctactaaattaccatctttacttatccactcaatccacatcaag |
341 |
Q |
| |
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| | |||||||| || |||||||||| | || |||||||| ||||| |||||||| ||||| |||||||||||| |||||| ||||| | | |
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| T |
722869 |
agcttcatcagctagcatgtttagcataacgtttgaccaatgcttgagaatctttgctaccaaattgaattctttacttatcatctcaatgcacataagg |
722968 |
T |
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| Q |
342 |
aaagccattacatttatcgatt |
363 |
Q |
| |
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|| ||||||||||| ||||||| |
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| T |
722969 |
aaggccattacattgatcgatt |
722990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 100; Significance: 2e-49; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 41 - 268
Target Start/End: Complemental strand, 11574715 - 11574488
Alignment:
| Q |
41 |
ttgttcaatgatatccttaaaagctctaacacatacatcattgatgaacttggtgatgccattgatcacttcgaggcgtttttcatggaaaaacttgagt |
140 |
Q |
| |
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||||||||| ||||||| ||||||| ||||||| ||||||||||| |||||||||| ||||||| |||||||||||||||| ||| ||||||| ||| |
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| T |
11574715 |
ttgttcaataatatcctcaaaagctataacacacacatcattgattaacttggtgacatcattgattacttcgaggcgttttttatgaaaaaactcaagt |
11574616 |
T |
|
| Q |
141 |
gtcacatttctacgcaagatgtgttgaatcaatggcaaatttgattcgagtacataaacgttagggcaatgagaactctctatgaaattaaggatgacaa |
240 |
Q |
| |
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|||| ||| | | ||| |||||||||||||||||||||||||||| | |||| || ||||||| |||||||| | || ||| |||| |||||||||| |
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| T |
11574615 |
gtcaaattgcggcacaatatgtgttgaatcaatggcaaatttgattggcctacaaaagtgttagggtaatgagaaatttcgatgcaattcaggatgacaa |
11574516 |
T |
|
| Q |
241 |
caacctcatcagcaaggttgtttagcat |
268 |
Q |
| |
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|||||||||||||||||||| ||||||| |
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| T |
11574515 |
caacctcatcagcaaggttgcttagcat |
11574488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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