View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8911_low_62 (Length: 406)
Name: NF8911_low_62
Description: NF8911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8911_low_62 |
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Alignment Details
Target: chr5 (Bit Score: 80; Significance: 2e-37; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 263 - 386
Target Start/End: Complemental strand, 13430271 - 13430148
Alignment:
| Q |
263 |
tgaatcagactatacaaatcccaacccaacaatggttgataaaacttatgggctacaactttgaaatattgtacttctcgggtcattgcaatgtggttgt |
362 |
Q |
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| T |
13430271 |
tgaatcaaactatacaaatcccaacccaacgatgattgacaaaacttctaggctacgactttgaaatattttacttctcaggtcatggaaatgtggttgt |
13430172 |
T |
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| Q |
363 |
cgatggtttgtcccgctgccaacc |
386 |
Q |
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| T |
13430171 |
cgatggtttgtcccgctgccaacc |
13430148 |
T |
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Target: chr5; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 4 - 73
Target Start/End: Complemental strand, 13431424 - 13431355
Alignment:
| Q |
4 |
cacccacacaccctctgttcttggcttcacaccatcaccctccacaattcccatttaaaaactcaccacc |
73 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13431424 |
cacccacacaccctctgttcttggcttcacaccatcaccctccacaattcccatttaaaaactcaccacc |
13431355 |
T |
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