View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8911_low_63 (Length: 403)
Name: NF8911_low_63
Description: NF8911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8911_low_63 |
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Alignment Details
Target: chr1 (Bit Score: 249; Significance: 1e-138; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 16 - 283
Target Start/End: Complemental strand, 12194760 - 12194492
Alignment:
| Q |
16 |
tggaagtcatgctaagggaatgcatttctatcaaactattcaacttcctgagttgcaaaaccaagagctagtaagcacactcaatttcttctgatttcct |
115 |
Q |
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| T |
12194760 |
tggaagtcatgctaagggaatgcatttctatcaaactattcaacttcctgagttgcaacaccaagagctagtaagcacactcaatttcttctgatttcct |
12194661 |
T |
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| Q |
116 |
attcattcattgtttcaatttttctatagcatcctcaacaagtagcatttc-ttttatttcattaccaaacaaagcaagacctatttttcaaccctaaaa |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
12194660 |
attcattcattgtttcaatttttctatagcatcctcaacaagtagcatttctttttatttcattagcaaacaaagcaagacctatttttcaaccctaaaa |
12194561 |
T |
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| Q |
215 |
tccaaccctctcaagttctgttatatcattttaaaacaagagcttcatcccatacagccactagatcat |
283 |
Q |
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| T |
12194560 |
accaaccctctcaagttctgttatatcattttaaaacaagagcttcatcccatacagccactagatcat |
12194492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 307 - 403
Target Start/End: Complemental strand, 12194494 - 12194398
Alignment:
| Q |
307 |
catgttttgattctctcattagtgaacattttattgtttccataaaaactatatatcatcagggccgatccgaaggtaaagctactaaagccttcac |
403 |
Q |
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| T |
12194494 |
catgtgttgattatctcattagtgaacattttattgtttccataaaaactatatatcatcagggccgatccgaaggtaaagctactaaagccttcac |
12194398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 16 - 92
Target Start/End: Original strand, 12876545 - 12876621
Alignment:
| Q |
16 |
tggaagtcatgctaagggaatgcatttctatcaaactattcaacttcctgagttgcaaaaccaagagctagtaagca |
92 |
Q |
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| T |
12876545 |
tggaagtgatgctaagggaatgcatttctaccgaactattcaacttcgtgagttgcaagatcaagagctagtaagca |
12876621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 29 - 90
Target Start/End: Complemental strand, 12881680 - 12881619
Alignment:
| Q |
29 |
aagggaatgcatttctatcaaactattcaacttcctgagttgcaaaaccaagagctagtaag |
90 |
Q |
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| T |
12881680 |
aagggaatgcatttctatcaaaccattcaacttcgtcagctgcaagaccaagagcttgtaag |
12881619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 32 - 107
Target Start/End: Original strand, 2356760 - 2356835
Alignment:
| Q |
32 |
ggaatgcatttctatcaaactattcaacttcctgagttgcaaaaccaagagctagtaagcacactcaatttcttct |
107 |
Q |
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| T |
2356760 |
ggaatacacttctatcaaaccattcagcttgacgagttgcaaaacctagaactagtaagcacactcactttattct |
2356835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 27 - 73
Target Start/End: Complemental strand, 12924970 - 12924924
Alignment:
| Q |
27 |
ctaagggaatgcatttctatcaaactattcaacttcctgagttgcaa |
73 |
Q |
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| T |
12924970 |
ctaagggaatgcatttttatctaaccattcaacttcgtgagttgcaa |
12924924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 26 - 58
Target Start/End: Original strand, 21113957 - 21113989
Alignment:
| Q |
26 |
gctaagggaatgcatttctatcaaactattcaa |
58 |
Q |
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| T |
21113957 |
gctaagggaatgcatttctatctaactattcaa |
21113989 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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