View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8911_low_64 (Length: 401)

Name: NF8911_low_64
Description: NF8911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8911_low_64
NF8911_low_64
[»] chr5 (12 HSPs)
chr5 (1-179)||(41369746-41369925)
chr5 (3-266)||(41324327-41324590)
chr5 (9-254)||(41316264-41316509)
chr5 (3-248)||(41337167-41337412)
chr5 (3-251)||(41332238-41332486)
chr5 (3-254)||(31188382-31188633)
chr5 (3-251)||(41328225-41328473)
chr5 (4-254)||(41366419-41366666)
chr5 (3-183)||(31225180-31225360)
chr5 (3-183)||(31178408-31178588)
chr5 (43-257)||(41310558-41310772)
chr5 (135-254)||(41286399-41286518)
[»] chr4 (1 HSPs)
chr4 (3-259)||(17249065-17249321)


Alignment Details
Target: chr5 (Bit Score: 144; Significance: 1e-75; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 1 - 179
Target Start/End: Original strand, 41369746 - 41369925
Alignment:
Q  1 gcattgctgatttgtatccttctattaaaatagttcaaagggtgagtagggcaaagaccaaaatggaaaaacttcagagagaggc-tgatatgatattgc 99  Q
    |||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||| |||| |||||| |||||||    
T  41369746 gcattgctgatttgtatccttctattaaaatacttcaaagggtaagtagggcaaagaccaaaatggaaaaacttcagagaaaggcatgatattatattgc 41369845  T
Q  100 aagatatcatcaatgatcacaaaagtaatcatagagaagaaatcaaggaagaagacctagttgatgttcttctaaagatt 179  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  41369846 aagatatcatcaatgatcacaaaaacaatcatagagaagaaatcaaggaagaagacctagttgatgttcttctaatgatt 41369925  T

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Target: chr5; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 3 - 266
Target Start/End: Original strand, 41324327 - 41324590
Alignment:
Q  3 attgctgatttgtatccttctattaaaatagttcaaagggtgagtagggcaaagaccaaaatggaaaaacttcagagagaggctgatatgatattgcaag 102  Q
    |||| |||||||||||||||||||||| |  ||||| | ||||||||||| ||| ||||||||||||||||||| | ||||  |||||||||||||||||    
T  41324327 attgttgatttgtatccttctattaaattgcttcaatgcgtgagtagggcgaaggccaaaatggaaaaacttcacaaagagattgatatgatattgcaag 41324426  T
Q  103 atatcatcaatgatcacaaaagtaatcatagagaagaaatcaaggaagaagacctagttgatgttcttctaaagattcaacgagaaaccgatcactcaga 202  Q
    | || ||| | ||||||||||| | ||| |  ||||| | ||| |||||| | ||||| ||||||||||| ||||||||||  ||||   |||||||| |    
T  41324427 acattatcgacgatcacaaaagcattcacaaggaagatagcaatgaagaatatctagtagatgttcttctcaagattcaacaggaaaattatcactcaca 41324526  T
Q  203 acaccccttgactgatgacagtataaaagcagtcattcaggttagtctacaataaaaaatgtta 266  Q
    ||| || || || ||||||| ||||||  || |||| |||||||||| ||||| |||| |||||    
T  41324527 acatcctttaaccgatgacaatataaagtcaatcatccaggttagtcaacaatcaaaagtgtta 41324590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 9 - 254
Target Start/End: Original strand, 41316264 - 41316509
Alignment:
Q  9 gatttgtatccttctattaaaatagttcaaagggtgagtagggcaaagaccaaaatggaaaaacttcagagagaggctgatatgatattgcaagatatca 108  Q
    ||||||| ||||||||||||| |  ||||| |  ||||||| || ||||||||||||||||||||||| | ||||  |||||||| ||||||||| ||||    
T  41316264 gatttgtttccttctattaaattgcttcaatgcttgagtagagcgaagaccaaaatggaaaaacttcacaaagagcttgatatgacattgcaagacatca 41316363  T
Q  109 tcaatgatcacaaaagtaatcatagagaagaaatcaaggaagaagacctagttgatgttcttctaaagattcaacgagaaaccgatcactcagaacaccc 208  Q
    || | ||||||||||| | ||| |  ||||||| ||| || ||||| ||||| ||||||||||| ||||||||||  ||||   |||||||| |||| ||    
T  41316364 tcgacgatcacaaaagcattcacaaggaagaaagcaatgatgaagatctagtagatgttcttctcaagattcaacaggaaaattatcactcacaacatcc 41316463  T
Q  209 cttgactgatgacagtataaaagcagtcattcaggttagtctacaa 254  Q
     || |||||||||| ||||||| || |||| |||||||||| ||||    
T  41316464 tttaactgatgacaatataaaatcaatcatccaggttagtccacaa 41316509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 3 - 248
Target Start/End: Original strand, 41337167 - 41337412
Alignment:
Q  3 attgctgatttgtatccttctattaaaatagttcaaagggtgagtagggcaaagaccaaaatggaaaaacttcagagagaggctgatatgatattgcaag 102  Q
    |||||||| ||||||||||||||||||||| |||||| ||| ||||| |  ||||||| | | || | | | ||  |||||  ||||| |||||||||||    
T  41337167 attgctgacttgtatccttctattaaaatacttcaaaaggtaagtagagtgaagaccagagttgagagattacaaggagagattgataggatattgcaag 41337266  T
Q  103 atatcatcaatgatcacaaaagtaatcatagagaagaaatcaaggaagaagacctagttgatgttcttctaaagattcaacgagaaaccgatcactcaga 202  Q
    | |||||||||||||| | ||  ||||| ||  ||  || |||||| ||||||||||||||||||||||| ||| ||||||  ||||  | ||||||| |    
T  41337267 acatcatcaatgatcatagaaacaatcacagtaaaacaagcaaggatgaagacctagttgatgttcttctcaaggttcaacatgaaaatgttcactcaca 41337366  T
Q  203 acaccccttgactgatgacagtataaaagcagtcattcaggttagt 248  Q
    ||| |||||||||||||| | ||||||| |||||||||||||||||    
T  41337367 acaacccttgactgatgaaaatataaaatcagtcattcaggttagt 41337412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 3 - 251
Target Start/End: Original strand, 41332238 - 41332486
Alignment:
Q  3 attgctgatttgtatccttctattaaaatagttcaaagggtgagtagggcaaagaccaaaatggaaaaacttcagagagaggctgatatgatattgcaag 102  Q
    ||||| |||||||||||||||||||||||  ||||| |  |||||||||  |||||||||||||||||| |||| ||||||  |||||||||| ||||||    
T  41332238 attgcagatttgtatccttctattaaaatgcttcaatgcatgagtagggagaagaccaaaatggaaaaaattcatagagagcttgatatgataatgcaag 41332337  T
Q  103 atatcatcaatgatcacaaaagtaatcatagagaagaaatcaaggaagaagacctagttgatgttcttctaaagattcaacgagaaaccgatcactcaga 202  Q
    | |||||| | ||||||| ||| | ||| |  |||| || ||| || ||||| ||||| ||||||||||| ||||||||||  ||||   || |||||||    
T  41332338 acatcatcgacgatcacagaagcattcacaaggaagcaagcaacgatgaagatctagtagatgttcttctcaagattcaacaggaaaattattactcaga 41332437  T
Q  203 acaccccttgactgatgacagtataaaagcagtcattcaggttagtcta 251  Q
    ||| || || || ||||||| ||| ||| || |||| ||||||||||||    
T  41332438 acatcctttaaccgatgacaatatgaaatcaatcatccaggttagtcta 41332486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 3 - 254
Target Start/End: Complemental strand, 31188633 - 31188382
Alignment:
Q  3 attgctgatttgtatccttctattaaaatagttcaaagggtgagtagggcaaagaccaaaatggaaaaacttcagagagaggctgatatgatattgcaag 102  Q
    ||||||||| ||||||||||| |||||||  ||||| ||||||||||||| ||||| ||| | ||||| ||||| | ||||  |||||||||||||||||    
T  31188633 attgctgatgtgtatccttctgttaaaatgtttcaatgggtgagtagggcgaagacgaaagttgaaaagcttcataaagagattgatatgatattgcaag 31188534  T
Q  103 atatcatcaatgatcacaaaagtaatcatagagaagaaatcaaggaagaagacctagttgatgttcttctaaagattcaacgagaaaccgatcactcaga 202  Q
    ||||||||  |||||| ||||  | ||| |  ||||||| |||||| ||||| |||||||||  |||||| ||||||||||  ||||  ||||||||| |    
T  31188533 atatcatcgttgatcataaaaacattcacaaggaagaaagcaaggatgaagatctagttgatactcttctcaagattcaacaggaaaatgatcactcaca 31188434  T
Q  203 acaccccttgactgatgacagtataaaagcagtcattcaggttagtctacaa 254  Q
      | || || |||||| ||| ||| |||||| |||||| |||| ||||||||    
T  31188433 taatccattaactgataacaatatgaaagcaatcattctggttcgtctacaa 31188382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 3 - 251
Target Start/End: Original strand, 41328225 - 41328473
Alignment:
Q  3 attgctgatttgtatccttctattaaaatagttcaaagggtgagtagggcaaagaccaaaatggaaaaacttcagagagaggctgatatgatattgcaag 102  Q
    ||||| ||||||||||||||||||||| |  ||||| || ||| |||||  ||||||||||||||||||||||| | ||||  ||||||||||   ||||    
T  41328225 attgcagatttgtatccttctattaaattgcttcaatggatgactagggagaagaccaaaatggaaaaacttcatacagagattgatatgatagcacaag 41328324  T
Q  103 atatcatcaatgatcacaaaagtaatcatagagaagaaatcaaggaagaagacctagttgatgttcttctaaagattcaacgagaaaccgatcactcaga 202  Q
    | |||||| | ||||||| ||||| ||| |  |||| || ||| || ||||| ||||| ||||||||||| ||||||||||  ||||   ||||||||||    
T  41328325 acatcatcgacgatcacagaagtattcacaaggaagcaagcaatgatgaagatctagtagatgttcttctcaagattcaacaggaaaattatcactcaga 41328424  T
Q  203 acaccccttgactgatgacagtataaaagcagtcattcaggttagtcta 251  Q
    ||| || || || ||||||| ||| ||| || |||| ||||||||||||    
T  41328425 acatcctttaaccgatgacaatatgaaatcaatcatccaggttagtcta 41328473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 4 - 254
Target Start/End: Original strand, 41366419 - 41366666
Alignment:
Q  4 ttgctgatttgtatccttctattaaaatagttcaaagggtgagtagggcaaagaccaaaatggaaaaacttcagagagaggctgatatgatattgcaaga 103  Q
    |||| |||||||||||||||||||||||  |||||| | | ||| || ||| ||  ||| | ||||||||||| |||||| |||||||||||||||||||    
T  41366419 ttgcagatttgtatccttctattaaaattcttcaaatgttaagttggccaaggaaaaaacttgaaaaacttcatagagagactgatatgatattgcaaga 41366518  T
Q  104 tatcatcaatgatcacaaaagtaatcatagagaagaaatcaaggaagaa----gacctagttgatgttcttctaaagattcaacgagaaaccgatcactc 199  Q
     |||||| ||||||||||||||| ||    | |||||| | ||||||||    || ||||| ||||||||||| ||||||||||| | ||   |||||||    
T  41366519 gatcatcgatgatcacaaaagtagtc----acaagaaagctaggaagaatgatgatctagtagatgttcttctcaagattcaacgtgtaa---atcactc 41366611  T
Q  200 agaacaccccttgactgatgacagtataaaagcagtcattcaggttagtctacaa 254  Q
    | |||| |||||||| || |||| ||||||| | ||||| |||||||||| ||||    
T  41366612 acaacatcccttgaccgacgacaatataaaatcggtcatccaggttagtcaacaa 41366666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 3 - 183
Target Start/End: Original strand, 31225180 - 31225360
Alignment:
Q  3 attgctgatttgtatccttctattaaaatagttcaaagggtgagtagggcaaagaccaaaatggaaaaacttcagagagaggctgatatgatattgcaag 102  Q
    |||| |||| ||||||||||||| |||||  ||||| ||||||||||||| ||||||||| | ||||| ||||| | ||||  |||||||||||||||||    
T  31225180 attgttgatgtgtatccttctataaaaatgcttcaatgggtgagtagggcgaagaccaaagttgaaaagcttcataaagagattgatatgatattgcaag 31225279  T
Q  103 atatcatcaatgatcacaaaagtaatcatagagaagaaatcaaggaagaagacctagttgatgttcttctaaagattcaac 183  Q
    |||||||| ||||||| ||||  | ||| |  ||||||| |||||| ||||| |||||||||  |||||| ||||| ||||    
T  31225280 atatcatcgatgatcataaaaacattcacaaggaagaaagcaaggatgaagatctagttgatactcttctcaagatacaac 31225360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 3 - 183
Target Start/End: Complemental strand, 31178588 - 31178408
Alignment:
Q  3 attgctgatttgtatccttctattaaaatagttcaaagggtgagtagggcaaagaccaaaatggaaaaacttcagagagaggctgatatgatattgcaag 102  Q
    ||||||||| |||||||||||||||||||  ||||| |||||||| |||  ||||||||| | |||||  |||| | ||||  |||||||||||||||||    
T  31178588 attgctgatgtgtatccttctattaaaatgcttcaacgggtgagtggggtgaagaccaaatttgaaaagtttcataaagagattgatatgatattgcaag 31178489  T
Q  103 atatcatcaatgatcacaaaagtaatcatagagaagaaatcaaggaagaagacctagttgatgttcttctaaagattcaac 183  Q
    ||||| || ||||||| ||||  | ||| |  ||||||| |||||| ||||| ||||||||||  ||| | ||||||||||    
T  31178488 atatcgtcgatgatcataaaaacattcacaaggaagaaagcaaggatgaagatctagttgatgcacttatcaagattcaac 31178408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 43 - 257
Target Start/End: Original strand, 41310558 - 41310772
Alignment:
Q  43 tgagtagggcaaagaccaaaatggaaaaacttcagagagaggctgatatgatattgcaagatatcatcaatgatcacaaaagtaatcatagagaagaaat 142  Q
    |||||||||| ||| |||||||||||||| |||| | ||||  | |||||||||||||||| |||||| | ||||||||||| | ||  |  ||||| |     
T  41310558 tgagtagggcgaaggccaaaatggaaaaagttcacaaagagatttatatgatattgcaagacatcatcgacgatcacaaaagcattcgcaaggaagatag 41310657  T
Q  143 caaggaagaagacctagttgatgttcttctaaagattcaacgagaaaccgatcactcagaacaccccttgactgatgacagtataaaagcagtcattcag 242  Q
    ||| || ||||| ||||| ||||||||||| |||||| |||  ||||   ||||||||||||| || || || ||||||| ||| ||| || |||| |||    
T  41310658 caatgatgaagatctagtagatgttcttctcaagattaaacaggaaaattatcactcagaacatcctttaacggatgacaatatgaaatcaatcatccag 41310757  T
Q  243 gttagtctacaataa 257  Q
    || ||||||||||||    
T  41310758 gtaagtctacaataa 41310772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 135 - 254
Target Start/End: Original strand, 41286399 - 41286518
Alignment:
Q  135 gaagaaatcaaggaagaagacctagttgatgttcttctaaagattcaacgagaaaccgatcactcagaacaccccttgactgatgacagtataaaagcag 234  Q
    ||||||| ||| || ||||| ||| ||||||||||||| ||||||||||  ||||  || |||||| |||| |||||||||||||| | | |||||||||    
T  41286399 gaagaaagcaaagatgaagatctaattgatgttcttctcaagattcaacaggaaagtgagcactcataacatcccttgactgatgataatttaaaagcag 41286498  T
Q  235 tcattcaggttagtctacaa 254  Q
    |||| |||||||||||||||    
T  41286499 tcatccaggttagtctacaa 41286518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 3 - 259
Target Start/End: Complemental strand, 17249321 - 17249065
Alignment:
Q  3 attgctgatttgtatccttctattaaaatagttcaaagggtgagtagggcaaagaccaaaatggaaaaacttcagagagaggctgatatgatattgcaag 102  Q
    |||| |||||||||||||||||| |||||| || ||||||| |||  ||  || |||||||||||||||||||| || ||   |||||||||||||||||    
T  17249321 attgttgatttgtatccttctatcaaaatacttaaaagggtaagtcaggtgaaaaccaaaatggaaaaacttcatagggaaattgatatgatattgcaag 17249222  T
Q  103 atatcatcaatgatcacaaaagtaatcatagagaagaaatcaaggaagaagacctagttgatgttcttctaaagattcaacgagaaaccgatcactcaga 202  Q
    |||||||  ||||||||| || |   || |   ||| |  |||||| ||||| |||||||||| |||| | |||||||||| |||||  ||| || || |    
T  17249221 atatcatagatgatcacagaaatggacaaaacaaagcacgcaaggatgaagatctagttgatgctcttatcaagattcaacaagaaagtgattacccaca 17249122  T
Q  203 acaccccttgactgatgacagtataaaagcagtcattcaggttagtctacaataaaa 259  Q
    | |  | ||||||||||||| ||||||| || |||| ||||||||||||||| ||||    
T  17249121 aaattcattgactgatgacaatataaaatcaatcatccaggttagtctacaagaaaa 17249065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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