View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8911_low_65 (Length: 399)
Name: NF8911_low_65
Description: NF8911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8911_low_65 |
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Alignment Details
Target: chr1 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 19 - 387
Target Start/End: Complemental strand, 35849705 - 35849347
Alignment:
| Q |
19 |
gtttggagcaatttccactaattaaggccagccagctagctgttgttcatataatagttgtttatgtgtacataaatttgttataggcaatactttttca |
118 |
Q |
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| T |
35849705 |
gtttggagcaatttccactaattaaggcaagccagccagctgttgttcatataatagttgtttatgtgtacataaatttgttatagacaatactttttca |
35849606 |
T |
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| Q |
119 |
attcaattagatggatatatttcattattcttttgtcaaacaagaatacatatactttgtaagataactttaggccatctctttccattgatgtgatagt |
218 |
Q |
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| T |
35849605 |
attcaattagatggatatatttcattattcttttgtcaaacaagaatacatatactttgtaagataactttaggccatctctttccattgatgtgatagt |
35849506 |
T |
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| Q |
219 |
catatatatacacacaatacaagtatctgcaagtatctgctcatgattatgctaatcatttacaatcaatattaatggtcaattttctatatctacatat |
318 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35849505 |
catatatatacacacaatacaagtat----------ctgctcatgattatgctaatcatttacaatcaatattaatggtcaattttctatatctacatat |
35849416 |
T |
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| Q |
319 |
tctaatgactttaattcaaattgcttaaggaattttcgattgatttttgtttgtacggtagttcatgat |
387 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35849415 |
tctaatgactttaattcaaattgcttaaggaattttcgattgatttttgtttgtacggtagttcatgat |
35849347 |
T |
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