View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8911_low_67 (Length: 390)
Name: NF8911_low_67
Description: NF8911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8911_low_67 |
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Alignment Details
Target: chr7 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 15 - 384
Target Start/End: Complemental strand, 10230960 - 10230591
Alignment:
| Q |
15 |
acatcaccgctatacttgttactattcatgttacccgcaaagtttacattgcttttctggtacacagcattcatattgtaaacaccgttccgaagcgagt |
114 |
Q |
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| T |
10230960 |
acattaccgctatacttgttactattcatgttacccgcaaagtttacattgcttttctggtacacagcattcatattgtaaacaccgttccgaagcgagc |
10230861 |
T |
|
| Q |
115 |
ttttgctcatattctcagtaaatttagagtccaggtttaacatgctcaagttaagagtgtcaaatttgttctcctcctggaacccaaatttatcccttgg |
214 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
10230860 |
ttttgctcatattctcggtaaatttagagtccaggtttaacatgctcaagttaagagtgtcgaatttgttctcctcctggaacccaaatttatcccttgg |
10230761 |
T |
|
| Q |
215 |
ccttgtttcgagaggaccctttgaaagatcaaggttgttgaagcgctcagcctttgatctctgttcagctaacttagaagcaaccatcaaccacttgtga |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10230760 |
ccttgtttcgagaggaccctttgaaagatcaaggttgttgaagcgctcagcctttgatctctgttcagctaacttagaagcaaccatcaaccacttgtga |
10230661 |
T |
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| Q |
315 |
tcctcagaggcttttgagtgtccgcgaagctcatcacctaactgccagaagctgtgcatgatgtccatct |
384 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
10230660 |
tcctcagaggcttttgagtgtccgcgaagctcatcacctaactgccagaagctgtgcatgttgtccatct |
10230591 |
T |
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