View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8911_low_69 (Length: 386)
Name: NF8911_low_69
Description: NF8911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8911_low_69 |
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| [»] chr7 (8 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 312; Significance: 1e-176; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 18 - 386
Target Start/End: Complemental strand, 45272207 - 45271838
Alignment:
| Q |
18 |
aattcacttagcacattcatttcaataatgagaattgtttctactcatcacaatgttaactgtaatagtggtagatagtgtttcaaccgagaagtttacg |
117 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45272207 |
aattcacttagcacattgatttcaataatgagaattgtttctactcatcacaatgttaactgtaatagtggtagatagtgtttcaaccgagaagtttacg |
45272108 |
T |
|
| Q |
118 |
actattacgtacctatcatctaaaaaattgccaaatatagaatttactttggttggttgaaacnnnnnnngataacctataaaaaccatatcatcatccc |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| |
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| T |
45272107 |
actattacgtacctatcatctaaaaaattgccaaatatagaatttactttggttggttgaaactttttttgataacctataaaaaccataccatcatccc |
45272008 |
T |
|
| Q |
218 |
ataactctgcaaggatctccaataatctcctataagcgt-nnnnnnntgaagggaaaggtaattatctccgttgtttctcttattctcgttgtaggtgtt |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45272007 |
ataactctgcaaggatctccaataatctcctataagcgtaaaaaaaatgaagggaaaggtaattatctccgttgtttctcttattctcgttgtaggtgtt |
45271908 |
T |
|
| Q |
317 |
atcatcggtgttgttgtcgacattcgcaaaaatggtgaagaccctaaggttcaaactcaacaaagaaatc |
386 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45271907 |
atcatcggtgttgttgtcgacattcgcaaaaatggtgaagaccctaaggttcaaactcaacaaagaaatc |
45271838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 18 - 386
Target Start/End: Complemental strand, 45275747 - 45275371
Alignment:
| Q |
18 |
aattcacttagcacattcatttcaataatgagaattgtttctactcatcacaatgttaactgtaatagtggtagatagtgtttcaacc------------ |
105 |
Q |
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|||||| ||||||||||||||||||||||||||||| ||||||||||| ||| |||||||||||||||||||||||||| |
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| T |
45275747 |
aattcaattagcacattcatttcaataatgagaattttttctactcataaca---------gtaatagtggtagatagtgtttcaactcattcctaaaat |
45275657 |
T |
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| Q |
106 |
-----gagaagtttacgactattacgtacctatcatctaaaaaattgccaaatatagaatttactttggttggttgaaacnnnnnnngataacctataaa |
200 |
Q |
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||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| |
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| T |
45275656 |
taactgagaagtttacgactattatgtgcctatcatctaaaaaattgccaaatatagaatttactttggttggttgaaacttttgttgataacgtataaa |
45275557 |
T |
|
| Q |
201 |
aaccatatcatcatcccataactctgcaaggatctccaataatctcctataagcgtnnnnnnntgaagggaaaggtaattatctccgttgtttctcttat |
300 |
Q |
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||||||| |||||||||| |||||||||||||||||||||||||||| |||||| | |||||||||||||||||||||||| ||||||||||| |
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| T |
45275556 |
aaccataacatcatcccagaactctgcaaggatctccaataatctccaataagcctaaaaaaatgaagggaaaggtaattatctccgccgtttctcttat |
45275457 |
T |
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| Q |
301 |
tctcgttgtaggtgttatcatcggtgttgttgtcgacattcgcaaaaatggtgaagaccctaaggttcaaactcaacaaagaaatc |
386 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| |||||||||||||||||||||||| |
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| T |
45275456 |
tctcgttgtaggtgttatcatcggtgttgttgtcgacattcacaaaaatggtaaagaccctgaggttcaaactcaacaaagaaatc |
45275371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 268 - 386
Target Start/End: Complemental strand, 45283730 - 45283612
Alignment:
| Q |
268 |
gggaaaggtaattatctccgttgtttctcttattctcgttgtaggtgttatcatcggtgttgttgtcgacattcgcaaaaatggtgaagaccctaaggtt |
367 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||| | |||||||||||||||||||||| ||||| |
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| T |
45283730 |
gggaaaggtaattatctccgctgtttctcttattctcgttgtaggtgttgccatcggtgttgttgtcgccgttcgcaaaaatggtgaagaccccgaggtt |
45283631 |
T |
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| Q |
368 |
caaactcaacaaagaaatc |
386 |
Q |
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| T |
45283630 |
caaactcaacaaagaaatc |
45283612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 102 - 242
Target Start/End: Complemental strand, 45283955 - 45283814
Alignment:
| Q |
102 |
aaccgagaagtttacgactattacgtacctatcatctaaaaaat-tgccaaatatagaatttactttggttggttgaaacnnnnnnngataacctataaa |
200 |
Q |
| |
|
|||||||||||||||||| |||| || |||||||||||||||| ||||| |||||||||||||||||||||||| |||| ||||||||||||| |
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| T |
45283955 |
aaccgagaagtttacgacaattatgtgcctatcatctaaaaaacatgccagatatagaatttactttggttggttaaaacttttattgataacctataaa |
45283856 |
T |
|
| Q |
201 |
aaccatatcatcatcccataactctgcaaggatctccaataa |
242 |
Q |
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||||||| ||||||||||||||||| || ||||||||||||| |
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| T |
45283855 |
aaccataacatcatcccataactcttcagggatctccaataa |
45283814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 102 - 242
Target Start/End: Complemental strand, 45295333 - 45295193
Alignment:
| Q |
102 |
aaccgagaagtttacgactattacgtacctatcatctaaaaaattgccaaatatagaatttactttggttggttgaaacnnnnnnngataacctataaaa |
201 |
Q |
| |
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|||||| |||||| |||| |||| || |||||||| ||| ||||||||||||||||||||||||||||||||| ||||| || |||||||||| |
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| T |
45295333 |
aaccgataagttttcgacaattatgtgcctatcatttaacaaattgccaaatatagaatttactttggttggtagaaacttttttttatcacctataaaa |
45295234 |
T |
|
| Q |
202 |
accatatcatcatcccataactctgcaaggatctccaataa |
242 |
Q |
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|||||| ||||||||||||||||| || ||||||||||||| |
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| T |
45295233 |
accataacatcatcccataactcttcagggatctccaataa |
45295193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 102 - 242
Target Start/End: Complemental strand, 45304293 - 45304153
Alignment:
| Q |
102 |
aaccgagaagtttacgactattacgtacctatcatctaaaaaattgccaaatatagaatttactttggttggttgaaacnnnnnnngataacctataaaa |
201 |
Q |
| |
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|||||| |||||| |||| |||| || |||||||| ||| ||||||||||||||||||||||||||||||||| ||||| || |||||||||| |
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| T |
45304293 |
aaccgataagttttcgacaattatgtgcctatcatttaacaaattgccaaatatagaatttactttggttggtagaaacttttttttatcacctataaaa |
45304194 |
T |
|
| Q |
202 |
accatatcatcatcccataactctgcaaggatctccaataa |
242 |
Q |
| |
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|||||| ||||||||||||||||| || ||||||||||||| |
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| T |
45304193 |
accataacatcatcccataactcttcagggatctccaataa |
45304153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 264 - 382
Target Start/End: Complemental strand, 45295122 - 45295004
Alignment:
| Q |
264 |
tgaagggaaaggtaattatctccgttgtttctcttattctcgttgtaggtgttatcatcggtgttgttgtcgacattcgcaaaaatggtgaagaccctaa |
363 |
Q |
| |
|
|||| ||||||||||||||||||| |||||||||||| ||||||||||||||| |||||| || ||| || ||| ||||||||||||||||||| | |
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| T |
45295122 |
tgaatggaaaggtaattatctccgctgtttctcttatcctcgttgtaggtgttgccatcggcgtggtttgcgctgttcacaaaaatggtgaagaccctga |
45295023 |
T |
|
| Q |
364 |
ggttcaaactcaacaaaga |
382 |
Q |
| |
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|||| |||||||||||||| |
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| T |
45295022 |
ggttaaaactcaacaaaga |
45295004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 264 - 382
Target Start/End: Complemental strand, 45304082 - 45303964
Alignment:
| Q |
264 |
tgaagggaaaggtaattatctccgttgtttctcttattctcgttgtaggtgttatcatcggtgttgttgtcgacattcgcaaaaatggtgaagaccctaa |
363 |
Q |
| |
|
|||| ||||||||||||||||||| |||||||||||| ||||||||||||||| |||||| || ||| || ||| ||||||||||||||||||| | |
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| T |
45304082 |
tgaatggaaaggtaattatctccgctgtttctcttatcctcgttgtaggtgttgccatcggcgtggtttgcgctgttcacaaaaatggtgaagaccctga |
45303983 |
T |
|
| Q |
364 |
ggttcaaactcaacaaaga |
382 |
Q |
| |
|
|||| |||||||||||||| |
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| T |
45303982 |
ggttaaaactcaacaaaga |
45303964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 18 - 79
Target Start/End: Complemental strand, 7241327 - 7241266
Alignment:
| Q |
18 |
aattcacttagcacattcatttcaataatgagaattgtttctactcatcacaatgttaactg |
79 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||||||||||||| | ||||||||| |
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| T |
7241327 |
aattcatttagcacattcatttcaataatgagaattgtttctactcatcatagtgttaactg |
7241266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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