View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8911_low_7 (Length: 776)

Name: NF8911_low_7
Description: NF8911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8911_low_7
NF8911_low_7
[»] chr1 (1 HSPs)
chr1 (16-760)||(40004638-40005384)


Alignment Details
Target: chr1 (Bit Score: 724; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 724; E-Value: 0
Query Start/End: Original strand, 16 - 760
Target Start/End: Original strand, 40004638 - 40005384
Alignment:
Q  16 agacaacactaaaataacac--aataagtgaacaaaaacacctcgcatatgaggacagaaggccaaaacttcatcttcttccagcaattctcaacaaagg 113  Q
    ||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40004638 agacaacactaaaataacacacaataagtgaacaaaaacacctcgcatatgaggacagaaggccaaaacttcatcttcttccagcaattctcaacaaagg 40004737  T
Q  114 agaaattatcccttgtatctcttgcaacgactgttgaatccgaatctctgcctcgacagtgctcttgagatttcttatatgcttcttgagaacttcagaa 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40004738 agaaattatcccttgtatctcttgcaacgactgttgaatccgaatctctgcctcgacagtgctcttgagatttcttatatgcttcttgagaacttcagaa 40004837  T
Q  214 ttcttaatatcatcagccctcatttcaataaccttattagccaatcccattaacaaactagaatacttgggcacagtacaatacttatgcaagaaagcca 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40004838 ttcttaatatcatcagccctcatttcaataaccttattagccaatcccattaacaaactagaatacttgggcacagtacaatacttatgcaagaaagcca 40004937  T
Q  314 aaagcagttccagtttctccaaatccaaatcagaaacacacctcaacaacttctttctagacaccaattcctccatcacagcaacaacatgccccggatt 413  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  40004938 aaagcagttccagtttctccaaatccaaatcagaaacacacctcaacaacttctttctagacaccaattcctccatcacagcaaccacatgccccggatt 40005037  T
Q  414 tttaccttccaacacgcacacaagagcctcaccatgcctaaacttattcaaaagcttatcatgtgcagtcaacttcaccttctttggcttcataaccaag 513  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40005038 tttaccttccaacacgcacacaagagcctcaccatgcctaaacttattcaaaagcttatcatgtgcagtcaacttcaccttctttggcttcataaccaag 40005137  T
Q  514 taatcaccctcagacggtttctctccttgccctctttgaaaatacctaaagttagtagttttcaaaaccttcttctcagtatcctccaccggcctaattc 613  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40005138 taatcaccctcagacggtttctctccttgccctctttgaaaatacctaaagttagtagttttcaaaaccttcttctcagtatcctccaccggcctaattc 40005237  T
Q  614 tccaaaacgaactagcctcactcacgccaacttccttctcatccaccttcaccttcctcttcgcagcataaattatcccattcgaagttccaatcaccct 713  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40005238 tccaaaacgaactagcctcactcacgccaacttccttctcatccaccttcaccttcctcttcgcagcataaattatcccattcgaagttccaatcaccct 40005337  T
Q  714 tgtagaacaatccggcgaatatccaacagacaaaagcggcgcaggat 760  Q
     |||||||||||||| |||||||||||||||||||||||||||||||    
T  40005338 cgtagaacaatccggggaatatccaacagacaaaagcggcgcaggat 40005384  T

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