View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8911_low_74 (Length: 379)
Name: NF8911_low_74
Description: NF8911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8911_low_74 |
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Alignment Details
Target: chr3 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 1 - 331
Target Start/End: Original strand, 48952833 - 48953179
Alignment:
| Q |
1 |
tggtctaaatcctatcaaagagaagttgtcgagagaaaaggctaaccttagttgtggtaggattccaaatatgctagatagaaaacaaaggatt------ |
94 |
Q |
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| T |
48952833 |
tggtctaaatcctatcaaagagaagttgtcaagagaaaaggctaaccttagttgtggtaggattccaaatatgctagatagaaaacaaaggattcttcct |
48952932 |
T |
|
| Q |
95 |
----------cttctgggtgtaggtgttgccttgcaagcaatgaacaagtagattttacctacaagattcctcaacttatttatattagaactaattgcc |
184 |
Q |
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| T |
48952933 |
ccacaagattcttctgggtgtaagtgttgccttgcaagcaatgaacaagtagattttacctacaagattcctcaacttatttatattagaactaattgcc |
48953032 |
T |
|
| Q |
185 |
ttgcatagcaaattacatttttggaacattaaaaaatatgatacagaatataatggaatatgatccaatgcattttatcccatttcagataatacacttt |
284 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
48953033 |
ttgcatagcaaattacatttttggaacattaaaaaatatgatacagaacataatggaatatgatccaatgcattttatcccatttcagatgatacacttt |
48953132 |
T |
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| Q |
285 |
ttattgtgtcaataatcgtttttgggttcaatatagggttaaactag |
331 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48953133 |
ttattgtgtcaataatcgtttttgggttcaatatagggttaaactag |
48953179 |
T |
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