View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8911_low_78 (Length: 367)
Name: NF8911_low_78
Description: NF8911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8911_low_78 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 17 - 367
Target Start/End: Complemental strand, 8093479 - 8093129
Alignment:
| Q |
17 |
aggtgtcaggtgaattcttgacattcccaggaggtggcactcaattcattcatggagctctacactacattgattttctccaacaggtagttgcaaattt |
116 |
Q |
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| T |
8093479 |
aggtgtcaggtgaattcttgacattcccaggaggtggcactcaattcattcatggagctctacactacattgattttctccaacaggtagttgcaaattt |
8093380 |
T |
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| Q |
117 |
aatttataaactaatcattttctagtacttaataattaggagtgatgcatagaccagaaaatgaatttatatcttgctaatcataatttctaacattgca |
216 |
Q |
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| T |
8093379 |
aatttataaactaatcattttctagtacttaataattaggagtgatgcatagaccagaaaatgaatttatatcttgctaatcataatttccaacattgca |
8093280 |
T |
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| Q |
217 |
ggctgaacctgatattgcatggggaaagcgcacaagggtgattttggatgttgggtgtggggttggaagttttggcggttacctattcgatagagatgtt |
316 |
Q |
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| T |
8093279 |
ggctgaacctgatattgcatggggaaagcgcacaagggtgattttggatgttgggtgtggggttggaagttttggcggttacctattcgatagagatgtt |
8093180 |
T |
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| Q |
317 |
gttgcaatgtctttagcaccgaaagacgagcatgaagcacaagttcaattt |
367 |
Q |
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| T |
8093179 |
gttgcaatgtctttagcaccgaaagacgagcatgaagcacaagttcaattt |
8093129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 61; Significance: 4e-26; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 227 - 363
Target Start/End: Original strand, 32507844 - 32507980
Alignment:
| Q |
227 |
gatattgcatggggaaagcgcacaagggtgattttggatgttgggtgtggggttggaagttttggcggttacctattcgatagagatgttgttgcaatgt |
326 |
Q |
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| T |
32507844 |
gatattgcatgggggaagcatacaagggttatacttgacgttgggtgtggtgttggtagttttggaggttacctatttgaaagagatgttattgctatgt |
32507943 |
T |
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| Q |
327 |
ctttagcaccgaaagacgagcatgaagcacaagttca |
363 |
Q |
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| T |
32507944 |
cttttgccccaaaagatgagcatgaagcacaagttca |
32507980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 25 - 105
Target Start/End: Original strand, 32507500 - 32507580
Alignment:
| Q |
25 |
ggtgaattcttgacattcccaggaggtggcactcaattcattcatggagctctacactacattgattttctccaacaggta |
105 |
Q |
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| T |
32507500 |
ggtgagtttttgacattccctggtggtggcactcagttcattcatggtgctctccattatattgattttcttcaaaaggta |
32507580 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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