View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8911_low_79 (Length: 365)

Name: NF8911_low_79
Description: NF8911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8911_low_79
NF8911_low_79
[»] chr1 (3 HSPs)
chr1 (1-347)||(134134-134486)
chr1 (6-61)||(156968-157023)
chr1 (304-347)||(156316-156359)
[»] chr7 (4 HSPs)
chr7 (126-185)||(34376803-34376862)
chr7 (126-176)||(34550533-34550583)
chr7 (126-185)||(34562253-34562312)
chr7 (3-54)||(34376937-34376988)
[»] chr5 (1 HSPs)
chr5 (126-176)||(15891353-15891403)


Alignment Details
Target: chr1 (Bit Score: 306; Significance: 1e-172; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 1 - 347
Target Start/End: Complemental strand, 134486 - 134134
Alignment:
Q  1 cgtccatatctttaaacgtctctgatttttgcaactccacctgcacagcacacaacataaacttgatgtaatccaaatttaaaagttgataatttccaca 100  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  134486 cgtccatatctttaaacgtctctaatttttgcaactccacctgcacagcacacaacataaacttgatgtaatccaaatttaaaagttgataatttccaca 134387  T
Q  101 taatgtttgagttgggagaaagttttaccatgtatttctttgaattttgaacataatatattgtcaaatttaggtccccaagtgtgttaacagcg----- 195  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         
T  134386 taatgtttgagttgggagaaagttgtaccatgtatttctttgaattttgaacataatatattgtcaaatttaggtccccaagtgtgttaacagcgaccaa 134287  T
Q  196 -agctcatacttatcccaacatagtgtacgaaggctgggtgtgtttacaataacctttccatatggaaaagttctcctatttgtaccctcttcaattgac 294  Q
     ||| ||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  134286 cagcccatccttatcccaacgtagtgtacgaaggctgggtgtgtttacaataacctttccatatggaaaagttctcctatttgtaccctcttcaattgac 134187  T
Q  295 aagagctcaatatcgtagttgtaccctcctgaacaaaaacacttaatcttcgg 347  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  134186 aagagctcaatatcgtagttgtaccctcctgaacaaaaacacttgatcttcgg 134134  T

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Target: chr1; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 6 - 61
Target Start/End: Complemental strand, 157023 - 156968
Alignment:
Q  6 atatctttaaacgtctctgatttttgcaactccacctgcacagcacacaacataaa 61  Q
    ||||||||||| |||||| ||||||||||||||||||||||| |||||||||||||    
T  157023 atatctttaaatgtctctaatttttgcaactccacctgcacaacacacaacataaa 156968  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 304 - 347
Target Start/End: Complemental strand, 156359 - 156316
Alignment:
Q  304 atatcgtagttgtaccctcctgaacaaaaacacttaatcttcgg 347  Q
    ||||| ||||||||||||||||||||||||||||| | ||||||    
T  156359 atatcttagttgtaccctcctgaacaaaaacacttgagcttcgg 156316  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 126 - 185
Target Start/End: Complemental strand, 34376862 - 34376803
Alignment:
Q  126 taccatgtatttctttgaattttgaacataatatattgtcaaatttaggtccccaagtgt 185  Q
    |||| ||||||||| |||||| |||| |||||||||||||||||||||||| ||||||||    
T  34376862 taccttgtatttctctgaattatgaagataatatattgtcaaatttaggtctccaagtgt 34376803  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 126 - 176
Target Start/End: Original strand, 34550533 - 34550583
Alignment:
Q  126 taccatgtatttctttgaattttgaacataatatattgtcaaatttaggtc 176  Q
    |||| ||||||||||||||||||||| |||||||||||||||||| |||||    
T  34550533 taccttgtatttctttgaattttgaagataatatattgtcaaattaaggtc 34550583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 126 - 185
Target Start/End: Original strand, 34562253 - 34562312
Alignment:
Q  126 taccatgtatttctttgaattttgaacataatatattgtcaaatttaggtccccaagtgt 185  Q
    |||| ||||||||| |||||| |||| |||||||||||||||||||||||| || |||||    
T  34562253 taccttgtatttctctgaattatgaagataatatattgtcaaatttaggtctccgagtgt 34562312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 3 - 54
Target Start/End: Complemental strand, 34376988 - 34376937
Alignment:
Q  3 tccatatctttaaacgtctctgatttttgcaactccacctgcacagcacaca 54  Q
    ||||||||| |||| |||||| |||||||||||||| |||||||| ||||||    
T  34376988 tccatatctctaaatgtctctaatttttgcaactccgcctgcacaacacaca 34376937  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 126 - 176
Target Start/End: Original strand, 15891353 - 15891403
Alignment:
Q  126 taccatgtatttctttgaattttgaacataatatattgtcaaatttaggtc 176  Q
    |||| ||||||||||||||||||||| |||||||||||||||||| |||||    
T  15891353 taccttgtatttctttgaattttgaaaataatatattgtcaaattaaggtc 15891403  T

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