View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8911_low_80 (Length: 362)

Name: NF8911_low_80
Description: NF8911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8911_low_80
NF8911_low_80
[»] chr4 (7 HSPs)
chr4 (1-349)||(44361184-44361532)
chr4 (46-332)||(35736176-35736454)
chr4 (95-152)||(38020377-38020433)
chr4 (95-158)||(2097082-2097144)
chr4 (112-158)||(29728814-29728859)
chr4 (110-158)||(22841088-22841136)
chr4 (115-147)||(43848689-43848721)
[»] chr7 (3 HSPs)
chr7 (96-158)||(46976943-46977005)
chr7 (97-158)||(36062542-36062603)
chr7 (113-149)||(37829928-37829964)
[»] chr5 (4 HSPs)
chr5 (111-156)||(9860790-9860835)
chr5 (96-158)||(29814963-29815024)
chr5 (99-152)||(31674258-31674311)
chr5 (111-147)||(7367596-7367632)
[»] chr8 (1 HSPs)
chr8 (97-147)||(12005095-12005145)
[»] chr6 (2 HSPs)
chr6 (93-147)||(23907946-23908000)
chr6 (96-152)||(21537471-21537526)
[»] chr2 (2 HSPs)
chr2 (116-158)||(26849265-26849307)
chr2 (111-152)||(14195205-14195245)
[»] chr3 (3 HSPs)
chr3 (115-159)||(42892912-42892957)
chr3 (111-152)||(54913724-54913765)
chr3 (95-147)||(54220540-54220592)


Alignment Details
Target: chr4 (Bit Score: 317; Significance: 1e-179; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 1 - 349
Target Start/End: Original strand, 44361184 - 44361532
Alignment:
Q  1 atcataacattcaatgttcattgtcactacnnnnnnnngaaacggccaattaatgttagtaattagttcttatgttaatattttttcttttattgggttt 100  Q
    ||||||||||||||||||||||||||||||        |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  44361184 atcataacattcaatgttcattgtcactacttttttttgaaacggccaatcaatgttagtaattagttcttatgttaatattttttcttttattgggttt 44361283  T
Q  101 gaacctgggtcctccaactcctttaacccttagctcaaaccagttgaactactcaacctccacccctctcctgttcagcgtcactactattttgccacat 200  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44361284 gaacctgggtcctccaactcctttaacccttagctcaaactagttgaactactcaacctccacccctctcctgttcagcgtcactactattttgccacat 44361383  T
Q  201 tttgattctgctgttttcattatattgaaaatggtgctttctgtaaacaatcaaatgaattagatattttaatatttcttttggctagatgtgtgatcta 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44361384 tttgattctgctgttttcattatattgaaaatggtgctttctgtaaacaatcaaatgaattagatattttaatatttcttttggctagatgtgtgatcta 44361483  T
Q  301 tatagttgattgaaggtttgttatgattaatatatacgaaatatgatgt 349  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  44361484 tatagttgattgaaggtttgttatgattaatatatacgaaatatgatgt 44361532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 46 - 332
Target Start/End: Original strand, 35736176 - 35736454
Alignment:
Q  46 ccaattaatgttagtaattagttcttatgttaatattttttcttttattgggtttgaacctgggtcctccaactcctttaacccttagctcaaaccagtt 145  Q
    ||||||||||||||||||||||| |||   || |||||| || || |   | |||||||| ||||||||||||||||||||||   ||||||||| ||||    
T  35736176 ccaattaatgttagtaattagttgttacactagtattttatccttcaccagatttgaacccgggtcctccaactcctttaacc---agctcaaactagtt 35736272  T
Q  146 gaactactcaacctccacccctctcctgttcagcgtcactactatttt-gccacattttgattctgctgttttcattatattgaaaatggtgctttctgt 244  Q
    |  |||| |||     |||||  | ||||   | |||||||||||||| ||| |||||||||||||||||||| |||| |||||||||||| ||| ||||    
T  35736273 gccctacccaat----acccccgttctgt---gtgtcactactatttttgcctcattttgattctgctgtttttattaaattgaaaatggttctt-ctgt 35736364  T
Q  245 aaacaatcaaatgaattagatattttaatatttcttttggctagatgtg--tgatctatatagttgattgaaggtttgttatgattaata 332  Q
    ||||| | ||||||||||||| ||||  |||||||||||||||||||||  | |||  |||||| |||||||| ||||||||||||||||    
T  35736365 aaacactaaaatgaattagatgttttggtatttcttttggctagatgtgtataatcactatagtcgattgaagatttgttatgattaata 35736454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 95 - 152
Target Start/End: Complemental strand, 38020433 - 38020377
Alignment:
Q  95 gggtttgaacctgggtcctccaactcctttaacccttagctcaaaccagttgaactac 152  Q
    |||||||||||| || ||||||||||||| ||||||||||||||||||||||| ||||    
T  38020433 gggtttgaaccttggacctccaactcctt-aacccttagctcaaaccagttgagctac 38020377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 95 - 158
Target Start/End: Complemental strand, 2097144 - 2097082
Alignment:
Q  95 gggtttgaacctgggtcctccaactcctttaacccttagctcaaaccagttgaactactcaacc 158  Q
    |||||||||||  || ||||||||||||| |||||||||||||||| |||||| |||| |||||    
T  2097144 gggtttgaacccaggacctccaactcctt-aacccttagctcaaactagttgagctacccaacc 2097082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 112 - 158
Target Start/End: Original strand, 29728814 - 29728859
Alignment:
Q  112 ctccaactcctttaacccttagctcaaaccagttgaactactcaacc 158  Q
    |||||||||||| ||||||||||||||||||||||| |||| |||||    
T  29728814 ctccaactcctt-aacccttagctcaaaccagttgagctacccaacc 29728859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 110 - 158
Target Start/End: Complemental strand, 22841136 - 22841088
Alignment:
Q  110 tcctccaactcctttaacccttagctcaaaccagttgaactactcaacc 158  Q
    |||| |||||| ||||||||||||||||||||| |||  ||||||||||    
T  22841136 tccttcaactcttttaacccttagctcaaaccaattgtgctactcaacc 22841088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 115 - 147
Target Start/End: Original strand, 43848689 - 43848721
Alignment:
Q  115 caactcctttaacccttagctcaaaccagttga 147  Q
    |||||||||||||||||||||||||| ||||||    
T  43848689 caactcctttaacccttagctcaaactagttga 43848721  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 96 - 158
Target Start/End: Original strand, 46976943 - 46977005
Alignment:
Q  96 ggtttgaacctgggtcctccaactcctttaacccttagctcaaaccagttgaactactcaacc 158  Q
    |||||||||||| || ||||||||| |||||||||||||||||||||||||| |||| |||||    
T  46976943 ggtttgaacctgagttctccaactcttttaacccttagctcaaaccagttgagctacccaacc 46977005  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 97 - 158
Target Start/End: Original strand, 36062542 - 36062603
Alignment:
Q  97 gtttgaacctgggtcctccaactcctttaacccttagctcaaaccagttgaactactcaacc 158  Q
    ||||| ||||||| ||||| |||||||||||||||||||||||| |||||| |||| |||||    
T  36062542 gtttggacctgggacctcctactcctttaacccttagctcaaacaagttgagctacccaacc 36062603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 113 - 149
Target Start/End: Complemental strand, 37829964 - 37829928
Alignment:
Q  113 tccaactcctttaacccttagctcaaaccagttgaac 149  Q
    ||||||||||||||||||||| |||||||||||||||    
T  37829964 tccaactcctttaacccttagatcaaaccagttgaac 37829928  T

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Target: chr5 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 111 - 156
Target Start/End: Original strand, 9860790 - 9860835
Alignment:
Q  111 cctccaactcctttaacccttagctcaaaccagttgaactactcaa 156  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||    
T  9860790 cctccaactcctttaacccttagctcaaaccagttgagctactcaa 9860835  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 158
Target Start/End: Original strand, 29814963 - 29815024
Alignment:
Q  96 ggtttgaacctgggtcctccaactcctttaacccttagctcaaaccagttgaactactcaacc 158  Q
    ||||||||||| || ||||||||||| ||| |||||||||||||||| |||| |||| |||||    
T  29814963 ggtttgaacctaggacctccaactcc-ttatcccttagctcaaaccaattgagctacccaacc 29815024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 152
Target Start/End: Complemental strand, 31674311 - 31674258
Alignment:
Q  99 ttgaacctgggtcctccaactcctttaacccttagctcaaaccagttgaactac 152  Q
    ||||||| ||| | ||||||||||||| ||||||| ||||||||||||| ||||    
T  31674311 ttgaacccgggacatccaactcctttaccccttagttcaaaccagttgagctac 31674258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 111 - 147
Target Start/End: Complemental strand, 7367632 - 7367596
Alignment:
Q  111 cctccaactcctttaacccttagctcaaaccagttga 147  Q
    |||||||||||||||||||||||| ||||| ||||||    
T  7367632 cctccaactcctttaacccttagcgcaaacaagttga 7367596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 97 - 147
Target Start/End: Complemental strand, 12005145 - 12005095
Alignment:
Q  97 gtttgaacctgggtcctccaactcctttaacccttagctcaaaccagttga 147  Q
    ||||||| ||||| ||||||| |||| |||| |||||||||||||||||||    
T  12005145 gtttgaatctgggacctccaattcctgtaactcttagctcaaaccagttga 12005095  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 93 - 147
Target Start/End: Original strand, 23907946 - 23908000
Alignment:
Q  93 ttgggtttgaacctgggtcctccaactcctttaacccttagctcaaaccagttga 147  Q
    ||||||||||||| ||| ||||||| ||||||||| | ||||||||| |||||||    
T  23907946 ttgggtttgaacccgggacctccaaatcctttaactcctagctcaaagcagttga 23908000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 96 - 152
Target Start/End: Complemental strand, 21537526 - 21537471
Alignment:
Q  96 ggtttgaacctgggtcctccaactcctttaacccttagctcaaaccagttgaactac 152  Q
    |||||||||||  | ||||||||||||| |||||||||||||||| |||||| ||||    
T  21537526 ggtttgaaccttagacctccaactcctt-aacccttagctcaaactagttgagctac 21537471  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 116 - 158
Target Start/End: Original strand, 26849265 - 26849307
Alignment:
Q  116 aactcctttaacccttagctcaaaccagttgaactactcaacc 158  Q
    |||||||||| ||||||||||||||||||||| |||| |||||    
T  26849265 aactcctttatcccttagctcaaaccagttgagctacccaacc 26849307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 111 - 152
Target Start/End: Original strand, 14195205 - 14195245
Alignment:
Q  111 cctccaactcctttaacccttagctcaaaccagttgaactac 152  Q
    ||||||||||||| ||||||||||||||||||||||| ||||    
T  14195205 cctccaactcctt-aacccttagctcaaaccagttgagctac 14195245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 159
Target Start/End: Complemental strand, 42892957 - 42892912
Alignment:
Q  115 caactcctttaa-cccttagctcaaaccagttgaactactcaacct 159  Q
    |||||||||||| |||||||||||||||| ||||||| ||||||||    
T  42892957 caactcctttaatcccttagctcaaaccaattgaactcctcaacct 42892912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 111 - 152
Target Start/End: Original strand, 54913724 - 54913765
Alignment:
Q  111 cctccaactcctttaacccttagctcaaaccagttgaactac 152  Q
    |||||||||| ||||||||||||||||||| |||||| ||||    
T  54913724 cctccaactcttttaacccttagctcaaactagttgagctac 54913765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 95 - 147
Target Start/End: Original strand, 54220540 - 54220592
Alignment:
Q  95 gggtttgaacctgggtcctccaactcctttaacccttagctcaaaccagttga 147  Q
    |||||||||| | |||||| ||||| ||| ||| |||||||||||||||||||    
T  54220540 gggtttgaacatcggtccttcaactgcttcaactcttagctcaaaccagttga 54220592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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