View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8911_low_82 (Length: 361)
Name: NF8911_low_82
Description: NF8911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8911_low_82 |
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Alignment Details
Target: chr2 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 1 - 345
Target Start/End: Original strand, 40592931 - 40593275
Alignment:
| Q |
1 |
aattagtgtaccaaatgtctgaaaaccagaaacaagagcaaggcatggaaagagatcatgaacttattgacctcaagaatcaccgtcgaatcccaactcc |
100 |
Q |
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| T |
40592931 |
aattagtgtaccaaatgtctgaaaaccagaaacaagagcaaggcatggaaagagatcatgaacttattgacctcaagaatcaccatcgaatcccaactcc |
40593030 |
T |
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| Q |
101 |
tccttctcggaaggactttgcgaaacccggtggatctagccattttggtgtcaatgacgataatgatcatcattacatacctcgcaaggattacggtacg |
200 |
Q |
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| T |
40593031 |
tccttctcggaaggactttgggaaacccggtggatctagccattttggtgtcaatgacgataatgatcatcattacatacctcgcaaggattacggtacg |
40593130 |
T |
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| Q |
201 |
catcctggcaatggatgaattggtctacgactacgagaagaagatatatatgcaataagttgtaagttacttttgttctgcacaagctaatgaggtcggt |
300 |
Q |
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| T |
40593131 |
catcctggcaatggatgaattggtctacgactacgagaagaagatatatatgcaataagttgtaagttacttttgttctgcacaagctaatgaggtcggt |
40593230 |
T |
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| Q |
301 |
gtagtaccatgaacatgtatattttcactattaaatcaataagtt |
345 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
40593231 |
gtagtaccacgaacatgtatattttcactattaaatcaataagtt |
40593275 |
T |
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