View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8911_low_83 (Length: 358)
Name: NF8911_low_83
Description: NF8911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8911_low_83 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 17 - 342
Target Start/End: Original strand, 48353306 - 48353631
Alignment:
| Q |
17 |
agcagaggatcggagagaagtagcttcggttgggtatatcacttaggagtgaattccattggtcatcaatattgtcatcttcgatttcttttgatcagag |
116 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48353306 |
agcaaaggatcggagagaagtagcttcggttgggtatatcacttaggagtgaattccattggtcatcaatattgtcatcttcgatttcttttgatcagag |
48353405 |
T |
|
| Q |
117 |
gaaagtatgtttccatgtacaagcgcgatccacatgaaaaccctgccattgtatgttctactaattcattgcctactatttaattacactcattcactct |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48353406 |
gaaagtatgtttccatgtacaagcgcgatcctcatgaaaaccctgccattgtatgttctactaattcattgcctactatttaattacactcattcactct |
48353505 |
T |
|
| Q |
217 |
aaactctaattactgcaccgattaatgcttgcatttctgctttacttcttaattgcactattttatcatcaaaacgcttgtctgtttcggttannnnnnn |
316 |
Q |
| |
|
||||||||||||||||||| ||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48353506 |
aaactctaattactgcacctattaatgttttcatttctgctttacttcttaattgcactattttatcatcaaaacgcttgtctgtttcggttattttttt |
48353605 |
T |
|
| Q |
317 |
aattctaaagagttagccacgaaact |
342 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
48353606 |
aattctaaagagttagccacgaaact |
48353631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 41 - 172
Target Start/End: Original strand, 21926292 - 21926423
Alignment:
| Q |
41 |
ttcggttgggtatatcacttaggagtgaattccattggtcatcaatattgtcatcttcgatttcttttgatcagaggaaagtatgtttccatgtacaagc |
140 |
Q |
| |
|
||||||||||| |||||| | || |||||||| ||||||||| |||||||||| ||||| ||||| || || ||||| || | |||||| |||||||| | |
|
|
| T |
21926292 |
ttcggttgggtttatcaccttggggtgaattctattggtcatgaatattgtcaccttcgttttctcttcattagaggcaaatgtgtttctatgtacaaac |
21926391 |
T |
|
| Q |
141 |
gcgatccacatgaaaaccctgccattgtatgt |
172 |
Q |
| |
|
| ||||| ||| | || |||| |||||||||| |
|
|
| T |
21926392 |
gtgatcctcatcagaatcctggcattgtatgt |
21926423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University