View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8911_low_84 (Length: 355)
Name: NF8911_low_84
Description: NF8911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8911_low_84 |
 | |
|
| [»] scaffold0428 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 322; Significance: 0; HSPs: 14)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 18 - 339
Target Start/End: Original strand, 31477286 - 31477607
Alignment:
| Q |
18 |
agtaaaatcattataatttctagagatgagcatatattgaagaattatggagtagatgaagtttacaaagttcctctcttggattggactaactctcttc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31477286 |
agtaaaatcattataatttctagagatgagcatatattgaagaattatggagtagatgaagtttacaaagttcctctcttggattggactaactctcttc |
31477385 |
T |
|
| Q |
118 |
aattattgtgtcgaaaagctttcaaacttgatcatattttgaatagttatgaagggttggttaatggcatactacattatgccaatggcctaccacttgc |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31477386 |
aattattgtgtcgaaaagctttcaaacttgatcatattttgaatagttatgaagggttggttaatggcatactacattatgccaatggcctaccacttgc |
31477485 |
T |
|
| Q |
218 |
aattaaagtattgggttcatttttgtttggtcgggatatatctgaatggagaagtgcattggctagactcaaagaaagtccagagaaggatgttatggat |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31477486 |
aattaaagtattgggttcatttttgtttggtcgggatatatctgaatggagaagtgcattggctagactcaaagaaagtccagagaaggatgttatggat |
31477585 |
T |
|
| Q |
318 |
gtgttgcgattaagttttgatg |
339 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
31477586 |
gtgttgcgattaagttttgatg |
31477607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 18 - 339
Target Start/End: Original strand, 31497239 - 31497560
Alignment:
| Q |
18 |
agtaaaatcattataatttctagagatgagcatatattgaagaattatggagtagatgaagtttacaaagttcctctcttggattggactaactctcttc |
117 |
Q |
| |
|
|||||||||||||| ||||||||||| ||||||||| |||| | |||||||| ||||| ||||||||||||||||| ||||||||||||||||||| | |
|
|
| T |
31497239 |
agtaaaatcattatcatttctagagacgagcatatactgaaagagtatggagtggatgaggtttacaaagttcctcttttggattggactaactctcgac |
31497338 |
T |
|
| Q |
118 |
aattattgtgtcgaaaagctttcaaacttgatcatattttgaatagttatgaagggttggttaatggcatactacattatgccaatggcctaccacttgc |
217 |
Q |
| |
|
|||||| |||||||||||||||||| ||||||||||||||| | ||||||||||||| ||||||||| |||| ||||||| ||||||||||||||| || |
|
|
| T |
31497339 |
gattattatgtcgaaaagctttcaaaattgatcatattttgagtggttatgaagggttagttaatggcgtactgcattatgtcaatggcctaccactggc |
31497438 |
T |
|
| Q |
218 |
aattaaagtattgggttcatttttgtttggtcgggatatatctgaatggagaagtgcattggctagactcaaagaaagtccagagaaggatgttatggat |
317 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||| ||||||| ||||||||||| |||| | | |||||||||| | || ||||| |||||| |
|
|
| T |
31497439 |
aattaaagtattgggttcatttttgtttgatcgggatataattgaatgggaaagtgcattggttagattgagagaaagtccaaacaaagatgtcatggat |
31497538 |
T |
|
| Q |
318 |
gtgttgcgattaagttttgatg |
339 |
Q |
| |
|
|||||||| | ||||||||||| |
|
|
| T |
31497539 |
gtgttgcgttaaagttttgatg |
31497560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 18 - 339
Target Start/End: Complemental strand, 31019559 - 31019238
Alignment:
| Q |
18 |
agtaaaatcattataatttctagagatgagcatatattgaagaattatggagtagatgaagtttacaaagttcctctcttggattggactaactctcttc |
117 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||| ||||| | |||||||| |||||||||||||||||||| |||||| || ||| |||||||||| |
|
|
| T |
31019559 |
agtagaatcattataatttctagagatgagcatatcttgaatgagtatggagttgatgaagtttacaaagttccactcttgaatgagaccaactctcttc |
31019460 |
T |
|
| Q |
118 |
aattattgtgtcgaaaagctttcaaacttgatcatattttgaatagttatgaagggttggttaatggcatactacattatgccaatggcctaccacttgc |
217 |
Q |
| |
|
||||||| |||| ||||||||||||||||||||||||| ||| | ||||||| ||| || || ||| ||||||||||||||||||||| || |
|
|
| T |
31019459 |
aattattttgtcaaaaagctttcaaacttgatcatattatgagtggttatgataaactggcacttgacacgctatcttatgccaatggcctaccactagc |
31019360 |
T |
|
| Q |
218 |
aattaaagtattgggttcatttttgtttggtcgggatatatctgaatggagaagtgcattggctagactcaaagaaagtccagagaaggatgttatggat |
317 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| ||||| || |||||||||||||||||||||||| | |||||||||||| | || ||| |||||||| |
|
|
| T |
31019359 |
aattaaagtattgggctcatttttgtttggtcgagatatctccgaatggagaagtgcattggctagattgaaagaaagtccaaacaaagatattatggat |
31019260 |
T |
|
| Q |
318 |
gtgttgcgattaagttttgatg |
339 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
31019259 |
gtgttgcgattaagttttgatg |
31019238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 18 - 339
Target Start/End: Original strand, 31502411 - 31502730
Alignment:
| Q |
18 |
agtaaaatcattataatttctagagatgagcatatattgaagaattatggagtagatgaagtttacaaagttcctctcttggattggactaactctcttc |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| || |||||| ||||||||||||||||||||||| |||||| ||||||||||||||| |
|
|
| T |
31502411 |
agtaaaatcattataatttctagagatgagcatatattgaaattttttggagtggatgaagtttacaaagttcctcttttggatcggactaactctcttc |
31502510 |
T |
|
| Q |
118 |
aattattgtgtcgaaaagctttcaaacttgatcatattttgaatagttatgaagggttggttaatggcatactacattatgccaatggcctaccacttgc |
217 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||| ||| |||||||||||||| |||||| ||||||||||||| | |||| ||| | || |
|
|
| T |
31502511 |
aattattgtgccgaaaagctttcaaacttgatcatattttgagtag-tatgaagggttggtcaatggcgtactacattatgctacgggcccaccgttagc |
31502609 |
T |
|
| Q |
218 |
aattaaagtattgggttcatttttgtttggtcgggatatatctgaatggagaagtgcattgg-ctagactcaaagaaagtccagagaaggatgttatgga |
316 |
Q |
| |
|
|||| |||||| ||| ||||||||| |||||| || || | |||||||| ||||||||||| ||||| | | ||| || || || || ||||| ||||| |
|
|
| T |
31502610 |
aattgaagtatagggctcatttttg--tggtcgagacatctttgaatggaaaagtgcattggcctagattgagagacagcccggacaaagatgtcatgga |
31502707 |
T |
|
| Q |
317 |
tgtgttgcgattaagttttgatg |
339 |
Q |
| |
|
|||| | ||||||||||||||| |
|
|
| T |
31502708 |
tgtgctcagattaagttttgatg |
31502730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 18 - 337
Target Start/End: Complemental strand, 31029440 - 31029121
Alignment:
| Q |
18 |
agtaaaatcattataatttctagagatgagcatatattgaagaattatggagtagatgaagtttacaaagttcctctcttggattggactaactctcttc |
117 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||| ||||| | |||||||| |||||||||||||||||||| |||||| || ||| |||||||||| |
|
|
| T |
31029440 |
agtagaatcattataatttctagagatgagcatatcttgaatgagtatggagttgatgaagtttacaaagttccactcttgaatgagaccaactctcttc |
31029341 |
T |
|
| Q |
118 |
aattattgtgtcgaaaagctttcaaacttgatcatattttgaatagttatgaagggttggttaatggcatactacattatgccaatggcctaccacttgc |
217 |
Q |
| |
|
||||||| |||| |||||||||||||||||| ||| || ||| | ||||||| ||| || || |||| ||||||||||||||||||||| || |
|
|
| T |
31029340 |
aattattttgtcaaaaagctttcaaacttgagcatgttatgagtggttatgataaaatggcacttgacacactatcttatgccaatggcctaccactagc |
31029241 |
T |
|
| Q |
218 |
aattaaagtattgggttcatttttgtttggtcgggatatatctgaatggagaagtgcattggctagactcaaagaaagtccagagaaggatgttatggat |
317 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| ||||| ||||||||||||||| |||||||||| | | |||| ||||| || ||| |||||||| |
|
|
| T |
31029240 |
tattaaagtattgggctcatttttgtttggtcgagatatctctgaatggagaagtaaattggctagattgagagaatgtccaatcaaagatattatggat |
31029141 |
T |
|
| Q |
318 |
gtgttgcgattaagttttga |
337 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
31029140 |
gtgttgcgattaagttttga |
31029121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 18 - 337
Target Start/End: Complemental strand, 31159008 - 31158689
Alignment:
| Q |
18 |
agtaaaatcattataatttctagagatgagcatatattgaagaattatggagtagatgaagtttacaaagttcctctcttggattggactaactctcttc |
117 |
Q |
| |
|
|||| |||| ||||||||||||||||||| ||||| ||||| | |||||||| |||| ||||||||||||||| |||||| || ||||||||||||||| |
|
|
| T |
31159008 |
agtagaatcgttataatttctagagatgaacatatcttgaaagagtatggagttgatgtagtttacaaagttccactcttgaatgggactaactctcttc |
31158909 |
T |
|
| Q |
118 |
aattattgtgtcgaaaagctttcaaacttgatcatattttgaatagttatgaagggttggttaatggcatactacattatgccaatggcctaccacttgc |
217 |
Q |
| |
|
|||| || |||| ||||||||||||||||||||||||| ||| ||||| ||| |||| || |||||| |||||| ||||| ||||| || || |
|
|
| T |
31158908 |
aattgttttgtcaaaaagctttcaaacttgatcatattatgagtagttttgataagttgacatttgacatactcagttatgctaatggtctaccgctagc |
31158809 |
T |
|
| Q |
218 |
aattaaagtattgggttcatttttgtttggtcgggatatatctgaatggagaagtgcattggctagactcaaagaaagtccagagaaggatgttatggat |
317 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| || || | |||||||| |||||||||||||||| | | |||||||| | || ||| | |||||| |
|
|
| T |
31158808 |
aattaaagtattgggatcatttttgtttggtcgagacatctatgaatggaaaagtgcattggctagattgagcaaaagtccaaacaaagatatcatggat |
31158709 |
T |
|
| Q |
318 |
gtgttgcgattaagttttga |
337 |
Q |
| |
|
||| |||||||||||||||| |
|
|
| T |
31158708 |
gtgatgcgattaagttttga |
31158689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 18 - 339
Target Start/End: Complemental strand, 31150107 - 31149786
Alignment:
| Q |
18 |
agtaaaatcattataatttctagagatgagcatatattgaagaattatggagtagatgaagtttacaaagttcctctcttggattggactaactctcttc |
117 |
Q |
| |
|
|||| ||||||||||||||||||||| |||||||| ||||| | |||||||| |||| |||||||||||||| ||| || || ||||| ||||||||| |
|
|
| T |
31150107 |
agtagaatcattataatttctagagacgagcatatcttgaaagagtatggagtggatgttgtttacaaagttccactcctgaatcggactgactctcttc |
31150008 |
T |
|
| Q |
118 |
aattattgtgtcgaaaagctttcaaacttgatcatattttgaatagttatgaagggttggttaatggcatactacattatgccaatggcctaccacttgc |
217 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||| ||| ||||||||| ||||| || |||||| ||||| ||||||||||| || || |
|
|
| T |
31150007 |
aattatttagtcgaaaagctttcaaacttgatcatattatgagtagttatgataagttggcatctgagatactaaggtatgctaatggcctacctctagc |
31149908 |
T |
|
| Q |
218 |
aattaaagtattgggttcatttttgtttggtcgggatatatctgaatggagaagtgcattggctagactcaaagaaagtccagagaaggatgttatggat |
317 |
Q |
| |
|
|||||||||||| || || ||||||| || ||| |||| | |||||||| |||||||||||| ||| | | |||||||||| | || ||| | |||||| |
|
|
| T |
31149907 |
aattaaagtattaggctcgtttttgtatgatcgaaatatttttgaatggaaaagtgcattggcaagattgagagaaagtccaaacaaagatatcatggat |
31149808 |
T |
|
| Q |
318 |
gtgttgcgattaagttttgatg |
339 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
31149807 |
gtgttgcgattaagttttgatg |
31149786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 18 - 284
Target Start/End: Complemental strand, 31528168 - 31527902
Alignment:
| Q |
18 |
agtaaaatcattataatttctagagatgagcatatattgaagaattatggagtagatgaagtttacaaagttcctctcttggattggactaactctcttc |
117 |
Q |
| |
|
|||| ||||||||||||||| |||||| ||||| ||||| | |||||||| |||| ||||| ||||||||| |||||| || ||||| ||||||| |
|
|
| T |
31528168 |
agtagaatcattataatttcgagagatactcatatcttgaataggtatggagtggatgtagttttcaaagttccactcttgaatcaaactaattctcttc |
31528069 |
T |
|
| Q |
118 |
aattattgtgtcgaaaagctttcaaacttgatcatattttgaatagttatgaagggttggttaatggcatactacattatgccaatggcctaccacttgc |
217 |
Q |
| |
|
||||||| || | | |||||||||||| |||| ||||||||| || |||||| | |||||| ||| |||||| ||||||| |||||| ||||||| || |
|
|
| T |
31528068 |
aattattttgccaacaagctttcaaacgtgataatattttgagtaattatgacgagttggtatatgagatactaaattatgctaatggcttaccactagc |
31527969 |
T |
|
| Q |
218 |
aattaaagtattgggttcatttttgtttggtcgggatatatctgaatggagaagtgcattggctaga |
284 |
Q |
| |
|
||||||| |||||| ||||||||||||||||| ||||| | ||||||||||||||||||| ||||| |
|
|
| T |
31527968 |
gattaaagcattgggctcatttttgtttggtcgagatatttatgaatggagaagtgcattgactaga |
31527902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 18 - 320
Target Start/End: Original strand, 31489987 - 31490289
Alignment:
| Q |
18 |
agtaaaatcattataatttctagagatgagcatatattgaagaattatggagtagatgaagtttacaaagttcctctcttggattggactaactctcttc |
117 |
Q |
| |
|
|||| |||||||||||||||| ||||||| ||||| ||||| | |||||||| |||| |||||||| |||||| |||||| ||||||| |||||||||| |
|
|
| T |
31489987 |
agtagaatcattataatttctggagatgaacatatcttgaaagagtatggagttgatgtagtttacagagttccactcttgaattggaccaactctcttc |
31490086 |
T |
|
| Q |
118 |
aattattgtgtcgaaaagctttcaaacttgatcatattttgaatagttatgaagggttggttaatggcatactacattatgccaatggcctaccacttgc |
217 |
Q |
| |
|
||||||| | || |||||||||||||||| |||||||| | | | |||||| | |||| ||| |||| || ||||||| |||||| ||||||| || |
|
|
| T |
31490087 |
aattattttctctaaaagctttcaaactttatcatattatcagtgattatgaggagttgacatatgacatattaaattatgctaatggcttaccactagc |
31490186 |
T |
|
| Q |
218 |
aattaaagtattgggttcatttttgtttggtcgggatatatctgaatggagaagtgcattggctagactcaaagaaagtccagagaaggatgttatggat |
317 |
Q |
| |
|
|||| ||| |||||||| |||||| |||| ||| |||||||||||| || |||| ||| | | |||| ||||||| | || ||| |||||||| |
|
|
| T |
31490187 |
gattacagtgttgggttctagtttgttcagtcgaagtatctctgaatggagatctgaattgactaaattgaaagtaagtccacataaagatattatggat |
31490286 |
T |
|
| Q |
318 |
gtg |
320 |
Q |
| |
|
||| |
|
|
| T |
31490287 |
gtg |
31490289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 202 - 337
Target Start/End: Complemental strand, 31033591 - 31033457
Alignment:
| Q |
202 |
atggcctaccacttgcaattaaagtattgggttcatttttgtttggtcgggatatatctgaatggagaagtgcattggctagactcaaagaaagtccaga |
301 |
Q |
| |
|
|||||||||||| ||||||||||||||||| ||||||| || |||||| |||| |||||||||| |||||||||||||||| | | ||||| |||| | |
|
|
| T |
31033591 |
atggcctaccaccggcaattaaagtattgggctcatttt-gtgtggtcgaaatatctctgaatggacaagtgcattggctagattgagagaaaatccaaa |
31033493 |
T |
|
| Q |
302 |
gaaggatgttatggatgtgttgcgattaagttttga |
337 |
Q |
| |
|
|| ||| ||||||||||| |||||||||||||||| |
|
|
| T |
31033492 |
taaagatattatggatgtgctgcgattaagttttga |
31033457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 195 - 280
Target Start/End: Original strand, 31245571 - 31245656
Alignment:
| Q |
195 |
tatgccaatggcctaccacttgcaattaaagtattgggttcatttttgtttggtcgggatatatctgaatggagaagtgcattggc |
280 |
Q |
| |
|
|||||||||||||| ||| | ||||||||||| ||||| |||||||||| ||| || ||| | ||||||||||||||||||||||| |
|
|
| T |
31245571 |
tatgccaatggccttccattagcaattaaagttttgggctcatttttgtatggccgagatgtctctgaatggagaagtgcattggc |
31245656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 23 - 142
Target Start/End: Original strand, 31483145 - 31483264
Alignment:
| Q |
23 |
aatcattataatttctagagatgagcatatattgaagaattatggagtagatgaagtttacaaagttcctctcttggattggactaactctcttcaatta |
122 |
Q |
| |
|
|||||||||| ||| |||||||| ||||| ||| | | |||||||| || | | ||||||||||||| ||||| || ||| ||||||||||||||| |
|
|
| T |
31483145 |
aatcattatagtttgtagagatgctcatatcttggaagagtatggagtggacgcactttacaaagttccattcttgaatgagacaaactctcttcaatta |
31483244 |
T |
|
| Q |
123 |
ttgtgtcgaaaagctttcaa |
142 |
Q |
| |
|
|| ||||||||||||||||| |
|
|
| T |
31483245 |
ttctgtcgaaaagctttcaa |
31483264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 18 - 246
Target Start/End: Complemental strand, 31161415 - 31161187
Alignment:
| Q |
18 |
agtaaaatcattataatttctagagatgagcatatattgaagaattatggagtagatgaagtttacaaagttcctctcttggattggactaactctcttc |
117 |
Q |
| |
|
|||| ||||||||||| || ||||||||||||||| ||||| | || || |||| || ||||||||||| | ||| || ||||| ||||||||| |
|
|
| T |
31161415 |
agtagaatcattataacttttagagatgagcatatcttgaaagtgtttgttgtggatgttgtctacaaagttccattgttgaatgggactgactctcttc |
31161316 |
T |
|
| Q |
118 |
aattattgtgtcgaaaagctttcaaacttgatcatattttgaatagttatgaagggttggttaatggcatactacattatgccaatggcctaccacttgc |
217 |
Q |
| |
|
|||| | |||| |||||||||||| |||||||| | ||| ||||||||| | ||| || ||||||| ||||| |||||| ||||||| || |
|
|
| T |
31161315 |
aattgcttagtcggaaagctttcaaaattgatcatctcatgagtagttatgataagctggcatctgacatactatggtatgctaatggcttaccactagc |
31161216 |
T |
|
| Q |
218 |
aattaaagtattgggttcatttttgtttg |
246 |
Q |
| |
|
||||||||||||||| || |||||||||| |
|
|
| T |
31161215 |
aattaaagtattgggctcttttttgtttg |
31161187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 18 - 101
Target Start/End: Original strand, 31245394 - 31245477
Alignment:
| Q |
18 |
agtaaaatcattataatttctagagatgagcatatattgaagaattatggagtagatgaagtttacaaagttcctctcttggat |
101 |
Q |
| |
|
|||| |||||| |||||||||||||||| ||||| |||| | |||||||||||||||| |||||||||| ||||||||| |
|
|
| T |
31245394 |
agtagaatcatcataatttctagagatgttcatatcttgagagagcatggagtagatgaagtgtacaaagttcgactcttggat |
31245477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 18 - 339
Target Start/End: Original strand, 17439140 - 17439464
Alignment:
| Q |
18 |
agtaaaatcattataatttctagagatgagcatatattgaagaattatggagtagatgaagtttacaaagttcctctcttggattggactaactctcttc |
117 |
Q |
| |
|
|||| ||||||||| |||||||||||||||||||||||||| || |||||||| |||| ||||||||||||||| || ||| |||||| | ||| | | |
|
|
| T |
17439140 |
agtagaatcattatcatttctagagatgagcatatattgaaaaagtatggagtggatgtagtttacaaagttccacttttgaattggagagattct-tac |
17439238 |
T |
|
| Q |
118 |
aa-ttattgtgtcgaaaagctttcaaacttgatca---tattttgaatagttatgaagggttggttaatggcatactacattatgccaatggcctaccac |
213 |
Q |
| |
|
|| ||||| |||||||||||||||||| |||| | |||| ||| || |||| || |||| |||| ||||| ||||| ||||| ||||||| |
|
|
| T |
17439239 |
aagttattttgtcgaaaagctttcaaagttgagaacattattatgagtaattatcaaaatttggcaaatgagatactgagatatgctaatggtctaccac |
17439338 |
T |
|
| Q |
214 |
ttgcaattaaagtattgggttcatttttgtttggtcgggatatatctgaatggagaagtgcattggctagactcaaagaaagtccagagaaggatgttat |
313 |
Q |
| |
|
| |||||||||||| |||| ||||||||||||||| | || | ||||||||| ||||||||||||||| | | ||| |||||||| || ||||| || |
|
|
| T |
17439339 |
tagcaattaaagtaatgggctcatttttgtttggttgtaatgtgactgaatggaagagtgcattggctagattgagagagagtccagataaagatgtcat |
17439438 |
T |
|
| Q |
314 |
ggatgtgttgcgattaagttttgatg |
339 |
Q |
| |
|
|| ||| ||| |||||||||||||| |
|
|
| T |
17439439 |
agacgtgctgcaattaagttttgatg |
17439464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 65; Significance: 2e-28; HSPs: 16)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 195 - 339
Target Start/End: Complemental strand, 33264237 - 33264093
Alignment:
| Q |
195 |
tatgccaatggcctaccacttgcaattaaagtattgggttcatttttgtttggtcgggatatatctgaatggagaagtgcattggctagactcaaagaaa |
294 |
Q |
| |
|
||||| ||||| |||||||| |||||||||||||||||||||| |||||||||||| || | ||||||||| ||| |||||||||| | | ||||| |
|
|
| T |
33264237 |
tatgctaatggtctaccactagcaattaaagtattgggttcatatttgtttggtcgtaatgtgactgaatggaagagtacattggctagtttgagagaaa |
33264138 |
T |
|
| Q |
295 |
gtccagagaaggatgttatggatgtgttgcgattaagttttgatg |
339 |
Q |
| |
|
||||||| || ||||| ||||||||||||| |||||||||||||| |
|
|
| T |
33264137 |
gtccagataatgatgtcatggatgtgttgcaattaagttttgatg |
33264093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 33 - 339
Target Start/End: Complemental strand, 33273545 - 33273236
Alignment:
| Q |
33 |
atttctagagatgagcatatattgaagaattatggagtagatgaagtttacaaagttcctctcttggattggactaactctcttcaattattgtgtcgaa |
132 |
Q |
| |
|
|||||||||||||||||||||||||| | |||||||| |||| ||||||||||||||| || ||| ||||||| | |||| | ||||| |||| || |
|
|
| T |
33273545 |
atttctagagatgagcatatattgaaatactatggagtggatgcagtttacaaagttccacttttgaattggacagattctcacaagttattttgtcaaa |
33273446 |
T |
|
| Q |
133 |
aagctttcaaacttgatca---tattttgaatagttatgaagggttggttaatggcatactacattatgccaatggcctaccacttgcaattaaagtatt |
229 |
Q |
| |
|
||||||||||| |||| | |||| ||| || ||||||| || | ||| || ||| ||||||| ||||| |||||||| ||||||| |||||| |
|
|
| T |
33273445 |
aagctttcaaatttgagaaagttattatgagtaattatgaaaacttagcgtatgagattctagattatgctaatggtctaccactagcaattatagtatt |
33273346 |
T |
|
| Q |
230 |
gggttcatttttgtttggtcgggatatatctgaatggagaagtgcattggctagactcaaagaaagtccagagaaggatgttatggatgtgttgcgatta |
329 |
Q |
| |
|
||| ||||||||||||||||| || | ||||||||| ||||| |||||||| | | |||||||||| | || ||| | ||||||||| ||| |||| |
|
|
| T |
33273345 |
gggctcatttttgtttggtcgtaatgtgactgaatggaagagtgccctggctagattgagagaaagtccaaataatgatatcatggatgtgctgcaatta |
33273246 |
T |
|
| Q |
330 |
agttttgatg |
339 |
Q |
| |
|
|||||||||| |
|
|
| T |
33273245 |
agttttgatg |
33273236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 18 - 339
Target Start/End: Complemental strand, 33287310 - 33286986
Alignment:
| Q |
18 |
agtaaaatcattataatttctagagatgagcatatattgaagaattatggagtagatgaagtttacaaagttcctctcttggattggactaactctcttc |
117 |
Q |
| |
|
|||| ||| ||||| |||||||||||||||||||||||| | | |||||||| |||| ||| ||||||||||| ||||||||||||| | | ||| |
|
|
| T |
33287310 |
agtagaattattatcatttctagagatgagcatatattggaagagtatggagtggatgtagtctacaaagttccactcttggattggaatgaagctcaca |
33287211 |
T |
|
| Q |
118 |
aattattgtgtcgaaaagctttcaaacttgatca---tattttgaatagttatgaagggttggttaatggcatactacattatgccaatggcctaccact |
214 |
Q |
| |
|
||||| |||||||||||||||||| || | |||| ||| | ||||||| | ||||| ||| ||||| ||||||| ||||| ||||| | |
|
|
| T |
33287210 |
tgttattttgtcgaaaagctttcaaagaagagaaaattattatgagaaattatgaaagtttggtatatgagatactggattatgctaatggtctaccgtt |
33287111 |
T |
|
| Q |
215 |
tgcaattaaagtattgggttcatttttgtttggtcgggatatatctgaatggagaagtgcattggctagactcaaagaaagtccagagaaggatgttatg |
314 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| || | | ||||||| ||||||||| ||||| | | |||||||||||| || ||||| ||| |
|
|
| T |
33287110 |
agcaattaaagtattgggctcatttttgtttggtcgtaatgtgacggaatggaagagtgcattgactagattaagagaaagtccagataatgatgtcatg |
33287011 |
T |
|
| Q |
315 |
gatgtgttgcgattaagttttgatg |
339 |
Q |
| |
|
|||||| ||| ||||||||||||| |
|
|
| T |
33287010 |
gatgtgctgcagttaagttttgatg |
33286986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 18 - 339
Target Start/End: Complemental strand, 33059331 - 33059007
Alignment:
| Q |
18 |
agtaaaatcattataatttctagagatgagcatatattgaagaattatggagtagatgaagtttacaaagttcctctcttggattggactaactctcttc |
117 |
Q |
| |
|
|||| ||| ||||| |||||||||||||||||| ||||||| |||||||| |||| ||||||||||||| | || |||||||||| | | ||| |
|
|
| T |
33059331 |
agtagaattattatcatttctagagatgagcatgtattgaaagcgtatggagtggatgtagtttacaaagtttcactattggattggaatgaagctcaca |
33059232 |
T |
|
| Q |
118 |
aattattgtgtcgaaaagctttcaaacttgatca---tattttgaatagttatgaagggttggttaatggcatactacattatgccaatggcctaccact |
214 |
Q |
| |
|
||||| |||||||||||||||||| ||| | |||| ||| || |||| || ||||| || |||||||||||||| || || |||||||| |
|
|
| T |
33059231 |
tgttattttgtcgaaaagctttcaaagatgagaaaattattatgagtaattatcaaaatttggtagatcagatactacattatgctaaaggtctaccact |
33059132 |
T |
|
| Q |
215 |
tgcaattaaagtattgggttcatttttgtttggtcgggatatatctgaatggagaagtgcattggctagactcaaagaaagtccagagaaggatgttatg |
314 |
Q |
| |
|
||||||||||||||||| || |||||||||||||| || | ||||||||| ||||||||| ||||| | | | ||||||||| || ||||| ||| |
|
|
| T |
33059131 |
agcaattaaagtattgggctcgtttttgtttggtcgtaatgtgactgaatggaagagtgcattgactagattgagacaaagtccagttaaagatgtcatg |
33059032 |
T |
|
| Q |
315 |
gatgtgttgcgattaagttttgatg |
339 |
Q |
| |
|
|||||| ||| |||||||||||||| |
|
|
| T |
33059031 |
gatgtgctgcaattaagttttgatg |
33059007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 18 - 339
Target Start/End: Complemental strand, 33389840 - 33389516
Alignment:
| Q |
18 |
agtaaaatcattataatttctagagatgagcatatattgaagaattatggagtagatgaagtttacaaagttcctctcttggattggactaactctcttc |
117 |
Q |
| |
|
|||| ||| ||||| |||||||||||||||||||||||||| | |||||||| || | ||||||||||||||| || ||| || |||| | |||| |
|
|
| T |
33389840 |
agtagaataattatcatttctagagatgagcatatattgaaagagtatggagtggacgtagtttacaaagttccacttttgaatcggaccgattctcaca |
33389741 |
T |
|
| Q |
118 |
aattattgtgtcgaaaagctttcaaacttgatca---tattttgaatagttatgaagggttggttaatggcatactacattatgccaatggcctaccact |
214 |
Q |
| |
|
| ||||| |||| |||||||||||||| ||| | |||| ||| |||||| || |||| | || ||||| |||||| ||||| || ||||| |
|
|
| T |
33389740 |
agttattttgtcaaaaagctttcaaacatgagaaaattattatgagtagttaccaaaatttggattttgagatactgagttatgctaatggtcttccact |
33389641 |
T |
|
| Q |
215 |
tgcaattaaagtattgggttcatttttgtttggtcgggatatatctgaatggagaagtgcattggctagactcaaagaaagtccagagaaggatgttatg |
314 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| || | ||||||||| ||||||||||||||| | | |||||| ||||| || ||||| ||| |
|
|
| T |
33389640 |
agcaattaaagtattgggctcatttttgtttggtcgtaatgtgactgaatggaagagtgcattggctagattgagagaaaggccagataacgatgtcatg |
33389541 |
T |
|
| Q |
315 |
gatgtgttgcgattaagttttgatg |
339 |
Q |
| |
|
|||||| | | ||||||||||||| |
|
|
| T |
33389540 |
gatgtgctacagttaagttttgatg |
33389516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 18 - 339
Target Start/End: Complemental strand, 33402382 - 33402058
Alignment:
| Q |
18 |
agtaaaatcattataatttctagagatgagcatatattgaagaattatggagtagatgaagtttacaaagttcctctcttggattggactaactctcttc |
117 |
Q |
| |
|
|||| ||| ||||| |||||||||||||| ||||||||||| | |||| ||| || | |||||||||||||| || ||| ||||||| | |||| | |
|
|
| T |
33402382 |
agtagaattattatcatttctagagatgaacatatattgaaagagtatgaagtggacgtagtttacaaagttcaacttttgaattggaccgaatctcata |
33402283 |
T |
|
| Q |
118 |
aattattgtgtcgaaaagctttcaaacttgatca---tattttgaatagttatgaagggttggttaatggcatactacattatgccaatggcctaccact |
214 |
Q |
| |
|
| ||||| |||||||||||||||||| ||| | |||| ||| || |||| || |||| ||| ||| | ||||||| | ||| |||||||| |
|
|
| T |
33402282 |
agttattttgtcgaaaagctttcaaagctgagaaaattattatgagtaattatcaaaatttggcaaataagatattgaattatgctagtggtctaccact |
33402183 |
T |
|
| Q |
215 |
tgcaattaaagtattgggttcatttttgtttggtcgggatatatctgaatggagaagtgcattggctagactcaaagaaagtccagagaaggatgttatg |
314 |
Q |
| |
|
|||||||||||||||||| ||||||||||| ||||| || | ||||||||| ||||||||||||| | | | |||||||||| | || ||||| ||| |
|
|
| T |
33402182 |
tgcaattaaagtattgggctcatttttgttcggtcgtaatgtgactgaatggaagagtgcattggctaaattgagagaaagtccaaataaagatgtcatg |
33402083 |
T |
|
| Q |
315 |
gatgtgttgcgattaagttttgatg |
339 |
Q |
| |
|
|||||| ||| |||||||||||||| |
|
|
| T |
33402082 |
gatgtgctgcaattaagttttgatg |
33402058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 187 - 340
Target Start/End: Original strand, 33643086 - 33643239
Alignment:
| Q |
187 |
tactacattatgccaatggcctaccacttgcaattaaagtattgggttcatttttgtttggtcgggatatatctgaatggagaagtgcattggctagact |
286 |
Q |
| |
|
|||||| |||||| ||||| |||||||| ||||||| | ||||| | ||||||||||||||||| || || ||||||||| |||||||||||||| | |
|
|
| T |
33643086 |
tactacgttatgctaatggtctaccactagcaattacaatattgagctcatttttgtttggtcgtaatgtaactgaatggaatggtgcattggctagatt |
33643185 |
T |
|
| Q |
287 |
caaagaaagtccagagaaggatgttatggatgtgttgcgattaagttttgatgt |
340 |
Q |
| |
|
| |||| ||||||| || ||||||||||||||| || | ||||| |||||||| |
|
|
| T |
33643186 |
gagagaaggtccagataatgatgttatggatgtgctgagtttaagctttgatgt |
33643239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 18 - 339
Target Start/End: Complemental strand, 33411721 - 33411397
Alignment:
| Q |
18 |
agtaaaatcattataatttctagagatgagcatatattgaagaattatggagtagatgaagtttacaaagttcctctcttggattggactaactctcttc |
117 |
Q |
| |
|
|||| |||| |||| |||||||||||||||||||||||||| | || ||||| |||| ||||||||||||||| || || || | || | ||| |
|
|
| T |
33411721 |
agtagaatcgttatcatttctagagatgagcatatattgaaagagtacggagtggatgtagtttacaaagttccacttatgaatagtacagattcttacg |
33411622 |
T |
|
| Q |
118 |
aattattgtgtcgaaaagctttcaaacttgatca---tattttgaatagttatgaagggttggttaatggcatactacattatgccaatggcctaccact |
214 |
Q |
| |
|
| ||||| |||||||||||||||||| |||| | |||| ||| | |||| || |||| |||| |||||| ||||||| || || |||||||| |
|
|
| T |
33411621 |
agttattttgtcgaaaagctttcaaagttgagaaaattattatgagtgattatcaaaatttggcaaatgagatactagattatgctaaaggtctaccact |
33411522 |
T |
|
| Q |
215 |
tgcaattaaagtattgggttcatttttgtttggtcgggatatatctgaatggagaagtgcattggctagactcaaagaaagtccagagaaggatgttatg |
314 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| | | ||||||||| ||||||||||||||| | | ||||||||| | || ||||| ||| |
|
|
| T |
33411521 |
agcaattaaagtattgggctcatttttgtttggtcatagtgtggctgaatggaagagtgcattggctagattgagagaaagtccgcataatgatgtcatg |
33411422 |
T |
|
| Q |
315 |
gatgtgttgcgattaagttttgatg |
339 |
Q |
| |
|
|||||| ||| ||||||||||||| |
|
|
| T |
33411421 |
gatgtgctgcacttaagttttgatg |
33411397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 33 - 339
Target Start/End: Complemental strand, 33306239 - 33305930
Alignment:
| Q |
33 |
atttctagagatgagcatatattgaagaattatggagtagatgaagtttacaaagttcctctcttggat-tggactaactctcttcaattattgtgtcga |
131 |
Q |
| |
|
||||||||||||||||||||||||||| | |||||||| |||| | ||||||||||||| |||||| || ||| | || |||| | ||||| |||||| |
|
|
| T |
33306239 |
atttctagagatgagcatatattgaaggagtatggagtggatgtattttacaaagttccactcttgaatatggccgaa-tctcacaagttattttgtcga |
33306141 |
T |
|
| Q |
132 |
aaagctttcaaacttgatcatatt---ttgaatagttatgaagggttggttaatggcatactacattatgccaatggcctaccacttgcaattaaagtat |
228 |
Q |
| |
|
||||||||||||||||| | ||| ||| || |||| || |||| ||| ||| | |||||| ||||| ||||| || ||||||| | ||| |
|
|
| T |
33306140 |
aaagctttcaaacttgagaacattatattgggtaattatcaaaatttggcagatgagatattgagttatgctaatggtctacccctagcaattacaatat |
33306041 |
T |
|
| Q |
229 |
tgggttcatttttgtttggtcgggatatatctgaatggagaagtgcattggctagactcaaagaaagtccagagaaggatgttatggatgtgttgcgatt |
328 |
Q |
| |
|
|||| ||||||||||||||||| || | ||||||||| ||||||||||||||| | | |||||||||| | || ||||| ||| ||||| ||| || |
|
|
| T |
33306040 |
tgggctcatttttgtttggtcgtaatgtgactgaatggaagagtgcattggctagattgagagaaagtccaaataaagatgtcatgaatgtgctgcattt |
33305941 |
T |
|
| Q |
329 |
aagttttgatg |
339 |
Q |
| |
|
||||||||||| |
|
|
| T |
33305940 |
aagttttgatg |
33305930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 193 - 339
Target Start/End: Complemental strand, 9168361 - 9168215
Alignment:
| Q |
193 |
attatgccaatggcctaccacttgcaattaaagtattgggttcatttttgtttggtcgggatatatctgaatggagaagtgcattggctagactcaaaga |
292 |
Q |
| |
|
||||||| || || |||||| | ||||||||||||||||| ||||||||||||||||| || | ||||||| | ||||||||||||||| | | | | |
|
|
| T |
9168361 |
attatgcgaaaggtctaccattagcaattaaagtattgggctcatttttgtttggtcgtaatgtgactgaatgcaagagtgcattggctagattgagaca |
9168262 |
T |
|
| Q |
293 |
aagtccagagaaggatgttatggatgtgttgcgattaagttttgatg |
339 |
Q |
| |
|
|| ||||| || ||||| ||||||||||||| | |||||||||||| |
|
|
| T |
9168261 |
aatcccagataaagatgtcatggatgtgttgcaactaagttttgatg |
9168215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 18 - 91
Target Start/End: Original strand, 31561121 - 31561194
Alignment:
| Q |
18 |
agtaaaatcattataatttctagagatgagcatatattgaagaattatggagtagatgaagtttacaaagttcc |
91 |
Q |
| |
|
|||| ||| ||||| |||||||||||||||||||||||||| | |||||||| |||| ||||||||||||||| |
|
|
| T |
31561121 |
agtagaattattatcatttctagagatgagcatatattgaaagagtatggagtggatgtagtttacaaagttcc |
31561194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 210 - 280
Target Start/End: Original strand, 13609637 - 13609707
Alignment:
| Q |
210 |
ccacttgcaattaaagtattgggttcatttttgtttggtcgggatatatctgaatggagaagtgcattggc |
280 |
Q |
| |
|
||||| |||||| |||| ||||| |||||||||| |||||| ||| | ||||||||||||||||||||||| |
|
|
| T |
13609637 |
ccactagcaattgaagtgttgggctcatttttgtatggtcgagatgtctctgaatggagaagtgcattggc |
13609707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 193 - 339
Target Start/End: Original strand, 28869261 - 28869407
Alignment:
| Q |
193 |
attatgccaatggcctaccacttgcaattaaagtattgggttcatttttgtttggtcgggatatatctgaatggagaagtgcattggctagactcaaaga |
292 |
Q |
| |
|
||||||| || || ||||| || ||||||| | ||||| |||| |||||||||||| || | ||||||||| ||||||||||||||| | | ||| |
|
|
| T |
28869261 |
attatgctaaaggtctaccgctagcaattacaatattgtactcatatttgtttggtcgtaatgtgactgaatggaagagtgcattggctagattgagaga |
28869360 |
T |
|
| Q |
293 |
aagtccagagaaggatgttatggatgtgttgcgattaagttttgatg |
339 |
Q |
| |
|
||||||||| || ||||| ||||||||| ||| ||||||||||||| |
|
|
| T |
28869361 |
aagtccagataatgatgtcatggatgtgctgcagttaagttttgatg |
28869407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 193 - 339
Target Start/End: Original strand, 31561299 - 31561445
Alignment:
| Q |
193 |
attatgccaatggcctaccacttgcaattaaagtattgggttcatttttgtttggtcgggatatatctgaatggagaagtgcattggctagactcaaaga |
292 |
Q |
| |
|
||||||| || || ||||| || ||||||| ||||||||| ||||||||||||||||| || | ||||||||| ||||||||| | ||| | | ||| |
|
|
| T |
31561299 |
attatgctaaaggtctaccgctagcaattacagtattgggctcatttttgtttggtcgtaatgtgactgaatggaagagtgcattgtccagattgagaga |
31561398 |
T |
|
| Q |
293 |
aagtccagagaaggatgttatggatgtgttgcgattaagttttgatg |
339 |
Q |
| |
|
||||||||| || |||| ||||||||| ||| |||||||||||| |
|
|
| T |
31561399 |
aagtccagataataatgtcatggatgtgctgcagataagttttgatg |
31561445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 27 - 91
Target Start/End: Original strand, 33642923 - 33642987
Alignment:
| Q |
27 |
attataatttctagagatgagcatatattgaagaattatggagtagatgaagtttacaaagttcc |
91 |
Q |
| |
|
||||| |||||||||||||||||||||||||| |||||||| |||| ||||||||||||||| |
|
|
| T |
33642923 |
attatcatttctagagatgagcatatattgaaagtgtatggagtggatgtagtttacaaagttcc |
33642987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 40 - 148
Target Start/End: Complemental strand, 9168520 - 9168409
Alignment:
| Q |
40 |
gagatgagcatatattgaagaattatggagta---gatgaagtttacaaagttcctctcttggattggactaactctcttcaattattgtgtcgaaaagc |
136 |
Q |
| |
|
||||||||||||||||||| | ||||||||| |||| ||||||||||||||| |||||| || |||| | |||| | ||||| | ||||||||| |
|
|
| T |
9168520 |
gagatgagcatatattgaaagagtatggagtactggatgtagtttacaaagttccactcttgaatcagactgaatctcactagttattttatcgaaaagc |
9168421 |
T |
|
| Q |
137 |
tttcaaacttga |
148 |
Q |
| |
|
|||||||||||| |
|
|
| T |
9168420 |
tttcaaacttga |
9168409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0428 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: scaffold0428
Description:
Target: scaffold0428; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 18 - 339
Target Start/End: Complemental strand, 8528 - 8204
Alignment:
| Q |
18 |
agtaaaatcattataatttctagagatgagcatatattgaagaattatggagtagatgaagtttacaaagttcctctcttggattggactaactctcttc |
117 |
Q |
| |
|
|||| |||| |||| ||||| |||||||| ||||||||||| | ||| ||| |||| ||||||||||||||| || ||||||||||| | |||| |
|
|
| T |
8528 |
agtagaatcgttatcatttcaagagatgaacatatattgaaagaatataaagtggatgtagtttacaaagttccactgttggattggaccgagtctcaca |
8429 |
T |
|
| Q |
118 |
aattattgtgtcgaaaagctttcaaacttgatcatatttt---gaatagttatgaagggttggttaatggcatactacattatgccaatggcctaccact |
214 |
Q |
| |
|
| ||||| |||| |||||||||||||||||| | ||| | ||| | |||| || |||| ||| ||||| |||| || ||||| |||||||| |
|
|
| T |
8428 |
agttattttgtcaaaaagctttcaaacttgagaaaattatcatgaaaaattatcaaaatttggcatatgagatactgaattacgctaatggtctaccact |
8329 |
T |
|
| Q |
215 |
tgcaattaaagtattgggttcatttttgtttggtcgggatatatctgaatggagaagtgcattggctagactcaaagaaagtccagagaaggatgttatg |
314 |
Q |
| |
|
||||||| ||||||||| |||||||||| |||||| || | ||||||||| ||||||||||||||||| | | |||||||| | || ||||| ||| |
|
|
| T |
8328 |
agcaattacagtattgggctcatttttgtctggtcgtaatgtgactgaatggaagagtgcattggctagactgagacaaagtccaaataaagatgtcatg |
8229 |
T |
|
| Q |
315 |
gatgtgttgcgattaagttttgatg |
339 |
Q |
| |
|
|||||| | | |||||||| ||||| |
|
|
| T |
8228 |
gatgtgcttcaattaagttatgatg |
8204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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