View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8911_low_85 (Length: 343)

Name: NF8911_low_85
Description: NF8911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8911_low_85
NF8911_low_85
[»] chr1 (2 HSPs)
chr1 (158-329)||(3305400-3305573)
chr1 (21-87)||(3305298-3305364)


Alignment Details
Target: chr1 (Bit Score: 114; Significance: 9e-58; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 158 - 329
Target Start/End: Original strand, 3305400 - 3305573
Alignment:
Q  158 gttttataaacttggc--aacaactaaatgcaaaaacaacacctgcaatagtaaccaaaagaaatgtgcaaagaatagctgatgcattctagtggtaaag 255  Q
    ||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  3305400 gttttataaacttggcgcaacaactaaatgcaaaaacaacacctgcaatagtaaccaaaagaaatgtgcaaagaatagttgatgcattctagtggtaaag 3305499  T
Q  256 aagcactagnnnnnnnnnnnnnnngaatctgcattaaaagtccacaatcacatttgacaaatagatcaataata 329  Q
    |||||||||               ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3305500 aagcactagaaaaaaaatcaaaaagaatctgcattaaaagtccacaatcacatttgacaaatagatcaataata 3305573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 21 - 87
Target Start/End: Original strand, 3305298 - 3305364
Alignment:
Q  21 ggtccaaaacctgagcaaggatnnnnnnnctgaattttaaaaaggagaaacaatctcgtgaacgaac 87  Q
    ||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||    
T  3305298 ggtccaaaacctgagcaaggataaaaaaactgaattttaaaaaggagaaacaatctcgtgaacgaac 3305364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University