View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8911_low_87 (Length: 338)
Name: NF8911_low_87
Description: NF8911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8911_low_87 |
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Alignment Details
Target: chr5 (Bit Score: 274; Significance: 1e-153; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 12 - 330
Target Start/End: Original strand, 2201029 - 2201347
Alignment:
| Q |
12 |
atggacatcattgtgttcctttatacgataccttaggtatgtgtaaacgtttagcatgtttgtacacagtgatggtgctttaacttaactgcaattgagt |
111 |
Q |
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| T |
2201029 |
atggacttcattgtgttcctttatacgataccttaggtatgtgtaaacgtttagcatgtttgtacacagtgatggtgctttaacttaactgcaattgagt |
2201128 |
T |
|
| Q |
112 |
tttggtttccaaacctactgtacatgagattttacactttgatgttgttagaaaagttgcaacatttttgtcaatatggcattttttgttaactttcacc |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
2201129 |
tttggtttccaaacctactgtacatgagattttacactttgatgttgttagaaaagttgcaacatttttgtcaatatggcattttttgctaactttcacc |
2201228 |
T |
|
| Q |
212 |
caagttcaccaatttatgcgaaaaacttacctgttttattaacaaagttccttatatttgatnnnnnnntatatgcaggctctcaattcacactttatta |
311 |
Q |
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| T |
2201229 |
caagttcactaatttatgcgaaaaacttacctgttttattaacaaagttccttatatttgataaaaaaaaaaatgcaggctctcaattcacactttatta |
2201328 |
T |
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| Q |
312 |
agaactttgatgtccatct |
330 |
Q |
| |
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|||||||||||||| |||| |
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| T |
2201329 |
agaactttgatgtctatct |
2201347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 12 - 330
Target Start/End: Original strand, 2213705 - 2214025
Alignment:
| Q |
12 |
atggacatcattgtgttcctttatacgataccttaggtatgtgtaaacgtttagcatgtttgtacacagtgatggtgctttaacttaact--gcaattga |
109 |
Q |
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|||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | | |||||||| |
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| T |
2213705 |
atggacttcattgtgttcctttatatgataccttaggtatgtgtaaacgtttagcatgtttgtacacagtgatggtgctttgtccgcaattagcaattga |
2213804 |
T |
|
| Q |
110 |
gttttggtttccaaacctactgtacatgagattttacactttgatgttgttagaaaagttgcaacatttttgtcaatatggcattttttgttaactttca |
209 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| | ||||||| |
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| T |
2213805 |
attttggtttccaaacctgttgtacatgagattttacactttgatgttattagaaaagttgcaacgtttttgtcaatatggcattttttgctgactttca |
2213904 |
T |
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| Q |
210 |
cccaagttcaccaatttatgcgaaaaacttacctgttttattaacaaagttccttata-tttgatnnnnnnntatatgcaggctctcaattcacacttta |
308 |
Q |
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|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| ||||||| | ||| ||||||||| ||| |
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| T |
2213905 |
cccaagctcaccaatttatgcgaaaaacttacctgtactattaacaaagttccttatattttgataaaaaaa-atatgcaagttctaaattcacacatta |
2214003 |
T |
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| Q |
309 |
ttaagaactttgatgtccatct |
330 |
Q |
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||||||||||||||||| |||| |
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| T |
2214004 |
ttaagaactttgatgtctatct |
2214025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 12 - 52
Target Start/End: Complemental strand, 41932180 - 41932140
Alignment:
| Q |
12 |
atggacatcattgtgttcctttatacgataccttaggtatg |
52 |
Q |
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|||||| | |||||||||||||||| ||||||||||||||| |
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| T |
41932180 |
atggactttattgtgttcctttatatgataccttaggtatg |
41932140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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