View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8911_low_93 (Length: 331)
Name: NF8911_low_93
Description: NF8911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8911_low_93 |
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Alignment Details
Target: chr3 (Bit Score: 91; Significance: 5e-44; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 196 - 298
Target Start/End: Original strand, 37841719 - 37841821
Alignment:
| Q |
196 |
atagtaatgtgtatgagaataaatgatgattgaaagaaaagaaattagttgcatggaacaaagaaatgtaaatagaagagaacaaatacaaattcattct |
295 |
Q |
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| T |
37841719 |
atagtaatgtgtatgagaataaatgatgattgaaatgaaagaaattagttgcatggaacaaagaaatgtatatagaagagaacaaatacaaattcattct |
37841818 |
T |
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| Q |
296 |
ctc |
298 |
Q |
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| T |
37841819 |
ctc |
37841821 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 37841509 - 37841588
Alignment:
| Q |
1 |
cttaatagcagtgcatctgttttggtcgttcaacaacaactctcatgtccgaatgacctcaaagggtgggttttgtagtt |
80 |
Q |
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| T |
37841509 |
cttaatagtagtgcatctgttttggttgttcaacaacaactctcatgttcgaatgacctcaaagggtgggttttgtagtt |
37841588 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 10 - 81
Target Start/End: Original strand, 37845294 - 37845365
Alignment:
| Q |
10 |
agtgcatctgttttggtcgttcaacaacaactctcatgtccgaatgacctcaaagggtgggttttgtagttg |
81 |
Q |
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| T |
37845294 |
agtgcatttgttttggttgtgcaacaacaactctcacacacgaatgaccttaaagggtggattttgtagttg |
37845365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 38380750 - 38380666
Alignment:
| Q |
1 |
cttaatagcagtgcatctgttttggtcgttcaacaacaactctcatgtccgaatgacctcaaagggtgggttttgtagttgtcaa |
85 |
Q |
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| T |
38380750 |
cttaatagtagtgcatctgttttggttgtgcaacaacaactctcacgcacgaatgaccttaaagggtggattttgtagttgtcaa |
38380666 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 38389616 - 38389532
Alignment:
| Q |
1 |
cttaatagcagtgcatctgttttggtcgttcaacaacaactctcatgtccgaatgacctcaaagggtgggttttgtagttgtcaa |
85 |
Q |
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| T |
38389616 |
cttaatagtaatgcatctgttttggttgtgcagcaacaactctcacgcgcaaatgaccttaaaaggtggattttgtagttgtcaa |
38389532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 38398379 - 38398339
Alignment:
| Q |
1 |
cttaatagcagtgcatctgttttggtcgttcaacaacaact |
41 |
Q |
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| T |
38398379 |
cttaatagtagtgcatctgttttggttgtgcaacaacaact |
38398339 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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