View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8911_low_95 (Length: 328)

Name: NF8911_low_95
Description: NF8911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8911_low_95
NF8911_low_95
[»] chr2 (8 HSPs)
chr2 (1-182)||(43011069-43011250)
chr2 (1-182)||(43013366-43013547)
chr2 (1-182)||(35075112-35075293)
chr2 (200-317)||(43011395-43011512)
chr2 (200-317)||(43013692-43013809)
chr2 (3-182)||(25203243-25203422)
chr2 (203-317)||(25202979-25203093)
chr2 (245-317)||(35075408-35075480)
[»] chr1 (2 HSPs)
chr1 (1-182)||(25676118-25676299)
chr1 (200-317)||(25675856-25675973)
[»] chr8 (2 HSPs)
chr8 (1-182)||(15090430-15090611)
chr8 (203-317)||(15090163-15090275)


Alignment Details
Target: chr2 (Bit Score: 182; Significance: 2e-98; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 182
Target Start/End: Complemental strand, 43011250 - 43011069
Alignment:
Q  1 attctcccaaagtcggaaccacatgtccgtcacccaatctgatacgtctaacaggagtctcggtaattcgcaaacccaaagccaaagctagacgccttga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43011250 attctcccaaagtcggaaccacatgtccgtcacccaatctgatacgtctaacaggagtctcggtaattcgcaaacccaaagccaaagctagacgccttga 43011151  T
Q  101 catgaaatttttgtttgctccactgtcaaccaacatcagcaccggtatctccctcactttcccttgaaatctgatgcattga 182  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43011150 catgaaatttttgtttgctccactgtcaaccaacatcagcaccggtatctccctcactttcccttgaaatctgatgcattga 43011069  T

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Target: chr2; HSP #2
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 182
Target Start/End: Complemental strand, 43013547 - 43013366
Alignment:
Q  1 attctcccaaagtcggaaccacatgtccgtcacccaatctgatacgtctaacaggagtctcggtaattcgcaaacccaaagccaaagctagacgccttga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43013547 attctcccaaagtcggaaccacatgtccgtcacccaatctgatacgtctaacaggagtctcggtaattcgcaaacccaaagccaaagctagacgccttga 43013448  T
Q  101 catgaaatttttgtttgctccactgtcaaccaacatcagcaccggtatctccctcactttcccttgaaatctgatgcattga 182  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43013447 catgaaatttttgtttgctccactgtcaaccaacatcagcaccggtatctccctcactttcccttgaaatctgatgcattga 43013366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 1 - 182
Target Start/End: Complemental strand, 35075293 - 35075112
Alignment:
Q  1 attctcccaaagtcggaaccacatgtccgtcacccaatctgatacgtctaacaggagtctcggtaattcgcaaacccaaagccaaagctagacgccttga 100  Q
    ||||||||||||| ||| |||||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||    
T  35075293 attctcccaaagttggagccacatgttcgtcacccaatctgatacgtctagcaggagtctcgataattcgcaaacccaaagccaaagctagacgccttga 35075194  T
Q  101 catgaaatttttgtttgctccactgtcaaccaacatcagcaccggtatctccctcactttcccttgaaatctgatgcattga 182  Q
    |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| ||| |||||| ||||||||||||    
T  35075193 catgaaatttttgtttgctccactgtcaaccaacatcaacaccgatatctccctcactgtcctttgaaacctgatgcattga 35075112  T

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Target: chr2; HSP #4
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 200 - 317
Target Start/End: Original strand, 43011395 - 43011512
Alignment:
Q  200 tgcgtttcgactatcaaggcgaatggatagagatcagaggaattcgtactagagagtgcactccattacaaaactatgttgatgaaaatcattttggcca 299  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43011395 tgcgtttcgactatcaaggcgaatggatagagatcagaggaattcgtactagagagtgcactccattacaaaactatgttgatgaaaatcattttggcca 43011494  T
Q  300 gttgcattgtgatgtcca 317  Q
    ||||||||||||||||||    
T  43011495 gttgcattgtgatgtcca 43011512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 200 - 317
Target Start/End: Original strand, 43013692 - 43013809
Alignment:
Q  200 tgcgtttcgactatcaaggcgaatggatagagatcagaggaattcgtactagagagtgcactccattacaaaactatgttgatgaaaatcattttggcca 299  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43013692 tgcgtttcgactatcaaggcgaatggatagagatcagaggaattcgtactagagagtgcactccattacaaaactatgttgatgaaaatcattttggcca 43013791  T
Q  300 gttgcattgtgatgtcca 317  Q
    ||||||||||||||||||    
T  43013792 gttgcattgtgatgtcca 43013809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 3 - 182
Target Start/End: Original strand, 25203243 - 25203422
Alignment:
Q  3 tctcccaaagtcggaaccacatgtccgtcacccaatctgatacgtctaacaggagtctcggtaattcgcaaacccaaagccaaagctagacgccttgaca 102  Q
    ||||||| ||||||| | |||||| ||||||||||||||||| ||||| |||||||||||||||| |||||||| ||||||||| ||| || ||||| ||    
T  25203243 tctcccatagtcggagctacatgttcgtcacccaatctgatatgtctagcaggagtctcggtaatgcgcaaacctaaagccaaacctatacaccttggca 25203342  T
Q  103 tgaaatttttgtttgctccactgtcaaccaacatcagcaccggtatctccctcactttcccttgaaatctgatgcattga 182  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||| |||| ||| ||| ||  |||||||||||    
T  25203343 tgaaatttttgtttgctccactatcaaccaacatcagcaccggtatctcccccactgtcctttgcaacttgatgcattga 25203422  T

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Target: chr2; HSP #7
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 203 - 317
Target Start/End: Complemental strand, 25203093 - 25202979
Alignment:
Q  203 gtttcgactatcaaggcgaatggatagagatcagaggaattcgtactagagagtgcactccattacaaaactatgttgatgaaaatcattttggccagtt 302  Q
    ||||||||||||| || |||||||| ||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||    
T  25203093 gtttcgactatcagggtgaatggattgagatcataggtattcgtactagagagtgcactccattacaaaactatgttgatgaaaatcattttggttagtt 25202994  T
Q  303 gcattgtgatgtcca 317  Q
    |||||||||||||||    
T  25202993 gcattgtgatgtcca 25202979  T

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Target: chr2; HSP #8
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 245 - 317
Target Start/End: Original strand, 35075408 - 35075480
Alignment:
Q  245 gtactagagagtgcactccattacaaaactatgttgatgaaaatcattttggccagttgcattgtgatgtcca 317  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  35075408 gtactagagagtgcactccattacaaaactatgttgatgaaaatcattttggtcagttgcattgtgatgtcca 35075480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 182; Significance: 2e-98; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 182
Target Start/End: Original strand, 25676118 - 25676299
Alignment:
Q  1 attctcccaaagtcggaaccacatgtccgtcacccaatctgatacgtctaacaggagtctcggtaattcgcaaacccaaagccaaagctagacgccttga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25676118 attctcccaaagtcggaaccacatgtccgtcacccaatctgatacgtctaacaggagtctcggtaattcgcaaacccaaagccaaagctagacgccttga 25676217  T
Q  101 catgaaatttttgtttgctccactgtcaaccaacatcagcaccggtatctccctcactttcccttgaaatctgatgcattga 182  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25676218 catgaaatttttgtttgctccactgtcaaccaacatcagcaccggtatctccctcactttcccttgaaatctgatgcattga 25676299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 200 - 317
Target Start/End: Complemental strand, 25675973 - 25675856
Alignment:
Q  200 tgcgtttcgactatcaaggcgaatggatagagatcagaggaattcgtactagagagtgcactccattacaaaactatgttgatgaaaatcattttggcca 299  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25675973 tgcgtttcgactatcaaggcgaatggatagagatcagaggaattcgtactagagagtgcactccattacaaaactatgttgatgaaaatcattttggcca 25675874  T
Q  300 gttgcattgtgatgtcca 317  Q
    ||||||||||||||||||    
T  25675873 gttgcattgtgatgtcca 25675856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 146; Significance: 7e-77; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 1 - 182
Target Start/End: Original strand, 15090430 - 15090611
Alignment:
Q  1 attctcccaaagtcggaaccacatgtccgtcacccaatctgatacgtctaacaggagtctcggtaattcgcaaacccaaagccaaagctagacgccttga 100  Q
    ||||||||||||||||| |||| || | |||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||    
T  15090430 attctcccaaagtcggagccacgtgactgtcacccaatctgatacgtctagcaggagtctcgataattcgcaaacccaaagccaaagctagacgccttga 15090529  T
Q  101 catgaaatttttgtttgctccactgtcaaccaacatcagcaccggtatctccctcactttcccttgaaatctgatgcattga 182  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| |||||    
T  15090530 catgaaatttttgtttgctccactgtcaaccaacatcagcaccggtatctccctcactgtcccttgaaacctgatgtattga 15090611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 203 - 317
Target Start/End: Complemental strand, 15090275 - 15090163
Alignment:
Q  203 gtttcgactatcaaggcgaatggatagagatcagaggaattcgtactagagagtgcactccattacaaaactatgttgatgaaaatcattttggccagtt 302  Q
    ||||||||||||| || |||||||| |||||||||||||||||||||||||  |||| ||||||||||||||||||||||||||||||||||||||||||    
T  15090275 gtttcgactatcagggtgaatggattgagatcagaggaattcgtactagag--tgcaatccattacaaaactatgttgatgaaaatcattttggccagtt 15090178  T
Q  303 gcattgtgatgtcca 317  Q
    |||||||||||||||    
T  15090177 gcattgtgatgtcca 15090163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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