View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8911_low_96 (Length: 312)
Name: NF8911_low_96
Description: NF8911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8911_low_96 |
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| [»] chr3 (4 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 268; Significance: 1e-149; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 9 - 312
Target Start/End: Complemental strand, 1072118 - 1071815
Alignment:
| Q |
9 |
gacatcacaattatcttttggtactgactcaataccactccaagtattgtcctctggactccatataacgcgttcatgaagactaagcgtttggttcaaa |
108 |
Q |
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||||||||||| || |||||||||||||| |||| | |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1072118 |
gacatcacaatcattttttggtactgactgaatatcgctccaagtgttgtcctctggactccatataacgcgttcatgaagactaagcgtttggttcaaa |
1072019 |
T |
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| Q |
109 |
taagttattgaaaccatactcttgtttacaagactatatctgaaataaacttcatttgaattgatcacaggtgttgtagctataacacttgacgtaataa |
208 |
Q |
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| T |
1072018 |
taagttattgaaaccatactcttgtttacaagactatatgtgaaataaacttcatttgaattgatcacaggtgttgtagctataacacttgacgtaataa |
1071919 |
T |
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| Q |
209 |
tctccataggcgctccactaaatccaactccattccaaggaccactcctgtgaatctcaactgatccttttttcaatacaatttctggattactatgaag |
308 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1071918 |
tctccataggtgctccactaaatccaactccattccaaggaccactcctgtgaatttcaactgatccttttttcaatacaatttctggattactatgaag |
1071819 |
T |
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| Q |
309 |
gaca |
312 |
Q |
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|||| |
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| T |
1071818 |
gaca |
1071815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 9 - 312
Target Start/End: Complemental strand, 1047305 - 1047002
Alignment:
| Q |
9 |
gacatcacaattatcttttggtactgactcaataccactccaagtattgtcctctggactccatataacgcgttcatgaagactaagcgtttggttcaaa |
108 |
Q |
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| T |
1047305 |
gacatcacaatcatcttttggtactgactcaataccactccaagtattgtcctctggactccatataatgcgttcgtgaagactaagcgtttggttcaaa |
1047206 |
T |
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| Q |
109 |
taagttattgaaaccatactcttgtttacaagactatatctgaaataaacttcatttgaattgatcacaggtgttgtagctataacacttgacgtaataa |
208 |
Q |
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| T |
1047205 |
taagttattgaaacattactcttgtttacaagactatatgagtaataaacctcatttgaattgttcacagatcttgcaacaacaacagttgatgtaacaa |
1047106 |
T |
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| Q |
209 |
tctccataggcgctccactaaatccaactccattccaaggaccactcctgtgaatctcaactgatccttttttcaatacaatttctggattactatgaag |
308 |
Q |
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| T |
1047105 |
tctccataggcgctccactaaatccaactccattccaaggaccactcctatgaatttcaactgatcctcttttcaaaacaatttctggattactacgaag |
1047006 |
T |
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| Q |
309 |
gaca |
312 |
Q |
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|||| |
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| T |
1047005 |
gaca |
1047002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 9 - 312
Target Start/End: Complemental strand, 1087779 - 1087476
Alignment:
| Q |
9 |
gacatcacaattatcttttggtactgactcaataccactccaagtattgtcctctggactccatataacgcgttcatgaagactaagcgtttggttcaaa |
108 |
Q |
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| T |
1087779 |
gacatcacaatcatcttttggcaacgactcaataacactccaagtatcgtcttctggaatccaattaacacgttcgcgatgactagttgtttggttcaaa |
1087680 |
T |
|
| Q |
109 |
taagttattgaaaccatactcttgtttacaagactatatctgaaataaacttcatttgaattgatcacaggtgttgtagctataacacttgacgtaataa |
208 |
Q |
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| T |
1087679 |
taagttattgaaacattactcttgtttacaagactatatatgtaataaacttcatttgaattgttcaccgacgttgtaattacaacaattgaagtaacaa |
1087580 |
T |
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| Q |
209 |
tctccataggcgctccactaaatccaactccattccaaggaccactcctgtgaatctcaactgatccttttttcaatacaatttctggattactatgaag |
308 |
Q |
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|||||| ||| ||||||||||||||||||||||||||||| ||| | || ||||||||||||||||||||||||||||||| ||||||||||||| ||| |
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| T |
1087579 |
tctccacaggtgctccactaaatccaactccattccaagggccagttctatgaatctcaactgatccttttttcaatacaacttctggattactactaag |
1087480 |
T |
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| Q |
309 |
gaca |
312 |
Q |
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|||| |
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| T |
1087479 |
gaca |
1087476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 97 - 312
Target Start/End: Complemental strand, 1104244 - 1104032
Alignment:
| Q |
97 |
gtttggttcaaataagttattgaaaccatactcttgtttacaagactatatctgaaataaacttcatttgaattgatcacaggtgttgtagctataacac |
196 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||| || | ||||||||||||| |||| ||||| | |||| | | || |
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| T |
1104244 |
gtttggttcaaataagttattgaaacattactcttgtttacaagactatatgtgtagtaaacttcatttgtattgttcacaaattttgtttcgacaat-- |
1104147 |
T |
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| Q |
197 |
ttgacgtaataatctccataggcgctccactaaatccaactccattccaaggaccactcctgtgaatctcaactgatccttttttcaatacaatttctgg |
296 |
Q |
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| T |
1104146 |
ttga-gtaacagtcaccgcgggtgctccactaaatccaactccattccaaggaccactcctatgaatctcaactgatccttttttcaatacaatttctgg |
1104048 |
T |
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| Q |
297 |
attactatgaaggaca |
312 |
Q |
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||||||| |||||||| |
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| T |
1104047 |
attactacgaaggaca |
1104032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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