View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8911_low_98 (Length: 304)

Name: NF8911_low_98
Description: NF8911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8911_low_98
NF8911_low_98
[»] chr5 (3 HSPs)
chr5 (18-290)||(28532493-28532765)
chr5 (157-212)||(29021558-29021613)
chr5 (156-209)||(28673512-28673565)
[»] chr6 (2 HSPs)
chr6 (101-286)||(6588466-6588648)
chr6 (103-214)||(6416827-6416938)
[»] chr3 (4 HSPs)
chr3 (103-214)||(13469859-13469970)
chr3 (92-214)||(51763574-51763696)
chr3 (253-286)||(514011-514044)
chr3 (164-209)||(513925-513970)
[»] chr1 (2 HSPs)
chr1 (92-203)||(19467621-19467732)
chr1 (253-286)||(19467779-19467812)
[»] chr4 (6 HSPs)
chr4 (103-203)||(21833493-21833593)
chr4 (115-204)||(532589-532681)
chr4 (254-286)||(1601193-1601225)
chr4 (252-286)||(21833639-21833673)
chr4 (116-214)||(53761012-53761110)
chr4 (253-286)||(53761152-53761185)
[»] chr7 (1 HSPs)
chr7 (109-203)||(10615459-10615553)
[»] chr8 (1 HSPs)
chr8 (156-209)||(18314876-18314929)


Alignment Details
Target: chr5 (Bit Score: 245; Significance: 1e-136; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 18 - 290
Target Start/End: Complemental strand, 28532765 - 28532493
Alignment:
Q  18 cgacctcgacctcatacttaaataccccttaaattatatctctatgatagagactcggactcgtagttataacaatgggatagaggctctctcactttca 117  Q
    |||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||    
T  28532765 cgacctcgacctcagactaaaataccccttaaattatatctctatgatagagactcgaactcgtagttataacaatggggtagaggctctctcactttca 28532666  T
Q  118 cttctcaaactccgcaaggttaatctttcttcctttcccatcaacaaccaatcacttttccacttgttcagcaactgtaagcttctccaagaagtcaaca 217  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28532665 cttcacaaactccgcaaggttaatctttcttcctttcccatcaacaaccaatcacttttccacttgttcagcaactgtaagcttctccaagaagtcaaca 28532566  T
Q  218 ttgatggttataagcaattattaaccgatgcagtcattgcttctgctctccgtgagagaccaacattgatgtc 290  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||    
T  28532565 ttgatggttataagcaattattaaccgatgcaggcattgcttctgctctccgtgagagaccgacattgatgtc 28532493  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 157 - 212
Target Start/End: Complemental strand, 29021613 - 29021558
Alignment:
Q  157 atcaacaaccaatcacttttccacttgttcagcaactgtaagcttctccaagaagt 212  Q
    |||||| |||||||||||||||||||  | | |||||||||||||||| |||||||    
T  29021613 atcaacgaccaatcacttttccactttataaacaactgtaagcttctcgaagaagt 29021558  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 209
Target Start/End: Original strand, 28673512 - 28673565
Alignment:
Q  156 catcaacaaccaatcacttttccacttgttcagcaactgtaagcttctccaaga 209  Q
    ||||||| |||||||||||||||| ||| | | |||||||||||||||| ||||    
T  28673512 catcaacgaccaatcacttttccatttgataaacaactgtaagcttctcgaaga 28673565  T

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Target: chr6 (Bit Score: 88; Significance: 3e-42; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 101 - 286
Target Start/End: Original strand, 6588466 - 6588648
Alignment:
Q  101 aggctctctcactttcacttctcaaactccgcaaggttaatctttcttcctttcccatcaacaaccaatcacttttccacttgttcagcaactgtaagct 200  Q
    |||||||||||||  ||||| ||||||| ||||||||||||||||||| ||||||||||||||| ||||| |||||||||||||||| ||| ||||||||    
T  6588466 aggctctctcactcgcacttttcaaacttcgcaaggttaatctttcttactttcccatcaacaatcaatcgcttttccacttgttcaacaattgtaagct 6588565  T
Q  201 tctccaagaagtcaacattgatggttataagcaattattaaccgatgcagtcattgcttctgctctccgtgagagaccaacattga 286  Q
    |||||| |||||||||||   ||||| |   |    ||||||| |||||| ||||||||||||||||||||||||||||| |||||    
T  6588566 tctccaggaagtcaacatatttggttgt---cgtgaattaaccaatgcaggcattgcttctgctctccgtgagagaccaaaattga 6588648  T

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Target: chr6; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 103 - 214
Target Start/End: Complemental strand, 6416938 - 6416827
Alignment:
Q  103 gctctctcactttcacttctcaaactccgcaaggttaatctttcttcctttcccatcaacaaccaatcacttttccacttgttcagcaactgtaagcttc 202  Q
    ||||| |||||| ||||| | ||||||||||| ||||||||||||   |||||  | ||||||||||| |||||||| || |||  ||||||||||||||    
T  6416938 gctctatcacttgcactttttaaactccgcaaagttaatctttctagatttcctgtaaacaaccaatcccttttccagttattccacaactgtaagcttc 6416839  T
Q  203 tccaagaagtca 214  Q
    || |||||||||    
T  6416838 tcgaagaagtca 6416827  T

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Target: chr3 (Bit Score: 56; Significance: 3e-23; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 103 - 214
Target Start/End: Original strand, 13469859 - 13469970
Alignment:
Q  103 gctctctcactttcacttctcaaactccgcaaggttaatctttcttcctttcccatcaacaaccaatcacttttccacttgttcagcaactgtaagcttc 202  Q
    ||||| |||||| ||||| | ||||||||||||||||||||||||   ||||| || ||||||| ||||||||||||||| |||  ||||||||||||||    
T  13469859 gctctatcacttgcactttttaaactccgcaaggttaatctttctagttttcctataaacaacctatcacttttccacttattccacaactgtaagcttc 13469958  T
Q  203 tccaagaagtca 214  Q
    || |||||||||    
T  13469959 tcgaagaagtca 13469970  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 92 - 214
Target Start/End: Original strand, 51763574 - 51763696
Alignment:
Q  92 atgggatagaggctctctcactttcacttctcaaactccgcaaggttaatctttcttcctttcccatcaacaaccaatcacttttccacttgttcagcaa 191  Q
    |||||||| | || || |||||| | ||| ||||||| || ||||||||| |||||  || |||||| ||||| ||||| ||||||||| |  |  ||||    
T  51763574 atgggatacaagcactttcacttgctcttttcaaactgcgtaaggttaatttttctggctgtcccataaacaatcaatcgcttttccaccttctatgcaa 51763673  T
Q  192 ctgtaagcttctccaagaagtca 214  Q
    |||||||||||||||||| ||||    
T  51763674 ctgtaagcttctccaagatgtca 51763696  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 253 - 286
Target Start/End: Original strand, 514011 - 514044
Alignment:
Q  253 attgcttctgctctccgtgagagaccaacattga 286  Q
    ||||||||||||||||||||||||||||||||||    
T  514011 attgcttctgctctccgtgagagaccaacattga 514044  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 209
Target Start/End: Original strand, 513925 - 513970
Alignment:
Q  164 accaatcacttttccacttgttcagcaactgtaagcttctccaaga 209  Q
    ||||||| ||||||||||||||||  |||||||||||||| |||||    
T  513925 accaatcgcttttccacttgttcaaaaactgtaagcttcttcaaga 513970  T

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Target: chr1 (Bit Score: 52; Significance: 8e-21; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 92 - 203
Target Start/End: Original strand, 19467621 - 19467732
Alignment:
Q  92 atgggatagaggctctctcactttcacttctcaaactccgcaaggttaatctttcttcctttcccatcaacaaccaatcacttttccacttgttcagcaa 191  Q
    ||||| |||||||||| |||||| ||||||||||||||||||||||||||||||||  ||||||||| | | || ||||  |||| |||||||| | |||    
T  19467621 atggggtagaggctctttcacttgcacttctcaaactccgcaaggttaatctttctggctttcccatgagcgacaaatcgatttttcacttgtttaacaa 19467720  T
Q  192 ctgtaagcttct 203  Q
     |||||||||||    
T  19467721 ttgtaagcttct 19467732  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 286
Target Start/End: Original strand, 19467779 - 19467812
Alignment:
Q  253 attgcttctgctctccgtgagagaccaacattga 286  Q
    |||||||||||| |||||||||||||||||||||    
T  19467779 attgcttctgctatccgtgagagaccaacattga 19467812  T

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Target: chr4 (Bit Score: 49; Significance: 5e-19; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 103 - 203
Target Start/End: Original strand, 21833493 - 21833593
Alignment:
Q  103 gctctctcactttcacttctcaaactccgcaaggttaatctttcttcctttcccatcaacaaccaatcacttttccacttgttcagcaactgtaagcttc 202  Q
    ||||| |||||| ||||| ||||||||||||||||||||||||||  ||||||||| ||||| ||||| |||||||||||| | |  || ||||||||||    
T  21833493 gctctttcacttgcacttatcaaactccgcaaggttaatctttctggctttcccataaacaatcaatctcttttccacttgctaaagaattgtaagcttc 21833592  T
Q  203 t 203  Q
    |    
T  21833593 t 21833593  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 115 - 204
Target Start/End: Complemental strand, 532681 - 532589
Alignment:
Q  115 tcacttctcaaactccgcaaggttaatctttcttc-ctttcc--catcaacaaccaatcacttttccacttgttcagcaactgtaagcttctc 204  Q
    |||||| |||||||||||||||||||||||||| | | |  |  ||||||| ||||||| ||||||||||||||||  || ||||||||||||    
T  532681 tcacttttcaaactccgcaaggttaatctttctactcatgactacatcaacgaccaatcgcttttccacttgttcaaaaattgtaagcttctc 532589  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 254 - 286
Target Start/End: Complemental strand, 1601225 - 1601193
Alignment:
Q  254 ttgcttctgctctccgtgagagaccaacattga 286  Q
    |||||||||||||||||||||||||||||||||    
T  1601225 ttgcttctgctctccgtgagagaccaacattga 1601193  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 252 - 286
Target Start/End: Original strand, 21833639 - 21833673
Alignment:
Q  252 cattgcttctgctctccgtgagagaccaacattga 286  Q
    ||||||||| |||||||||||||||||||||||||    
T  21833639 cattgcttcagctctccgtgagagaccaacattga 21833673  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 116 - 214
Target Start/End: Original strand, 53761012 - 53761110
Alignment:
Q  116 cacttctcaaactccgcaaggttaatctttcttcctttcccatcaacaaccaatcacttttccacttgttcagcaactgtaagcttctccaagaagtca 214  Q
    ||||| |||||||||| |||||||||||||||  |||  |||| | | | |||||||||||||||||||| |  || ||||| ||||| ||||| ||||    
T  53761012 cacttttcaaactccgtaaggttaatctttctggcttaaccataatcgaacaatcacttttccacttgttgaagaattgtaatcttcttcaagaggtca 53761110  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 286
Target Start/End: Original strand, 53761152 - 53761185
Alignment:
Q  253 attgcttctgctctccgtgagagaccaacattga 286  Q
    |||||||||||||||||||| |||||||||||||    
T  53761152 attgcttctgctctccgtgaaagaccaacattga 53761185  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 109 - 203
Target Start/End: Complemental strand, 10615553 - 10615459
Alignment:
Q  109 tcactttcacttctcaaactccgcaaggttaatctttcttcctttcccatcaacaaccaatcacttttccacttgttcagcaactgtaagcttct 203  Q
    |||||||||||| | ||||||||||||||||||||||||   |||| ||| ||||| ||||| ||| |||||||| ||  |||||||||||||||    
T  10615553 tcactttcactttttaaactccgcaaggttaatctttctagttttctcataaacaatcaatcccttctccacttgctcgacaactgtaagcttct 10615459  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 209
Target Start/End: Original strand, 18314876 - 18314929
Alignment:
Q  156 catcaacaaccaatcacttttccacttgttcagcaactgtaagcttctccaaga 209  Q
    ||||||| | ||||| ||||||||||||||||  ||||||||||||||| ||||    
T  18314876 catcaacgatcaatcgcttttccacttgttcaagaactgtaagcttctcgaaga 18314929  T

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