View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8911_low_99 (Length: 280)
Name: NF8911_low_99
Description: NF8911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8911_low_99 |
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Alignment Details
Target: chr7 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 262
Target Start/End: Original strand, 39615519 - 39615780
Alignment:
| Q |
1 |
acattgatattttctgaactatatgaaaattcaatacattgatacagagaagtaaattttcaaaaaactgcaacatatggaaaatcaaattcctaggttc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39615519 |
acattgatattttctgaactatatgaaaattcaatacattgatacagagaagtaaattttcaaaaaactgcaacatatggaaaatcaaattcctaggttc |
39615618 |
T |
|
| Q |
101 |
cttctcatgctaatacaacacatgaacaggggtaaatagccaaaaccaaagccagaaacgcataaacaaagtactagttaaatgcagaaagaaataaaca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39615619 |
cttctcatgctaatacaacacatgaacaggggtaaatagccaaaaccaaagccagaaacgcataaacaaagtactagttaaatgcagaaagaaataaaca |
39615718 |
T |
|
| Q |
201 |
agtttatagctattacctaattaatgttgagtacaaactgcaacttgtccttgaccctaaat |
262 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39615719 |
agtttatagctattacctaattaatgttgagtacaaactgcaacttgtccttgaccctaaat |
39615780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 63; Significance: 2e-27; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 152 - 262
Target Start/End: Complemental strand, 1581305 - 1581196
Alignment:
| Q |
152 |
ccagaaacgcataaacaaagtactagttaaatgcagaaagaaataaacaagtttatagctattacctaattaatgttgagtacaaactgcaacttgtcct |
251 |
Q |
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|||||| |||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| ||| ||||| ||| ||||||||| | |
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| T |
1581305 |
ccagaatcgcataaacaaagtac-agttaaatgcagaaacaaataaacaagtttatagctattacctaatttttgtcgagtagaaagtgcaacttgctat |
1581207 |
T |
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| Q |
252 |
tgaccctaaat |
262 |
Q |
| |
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||||||||||| |
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| T |
1581206 |
tgaccctaaat |
1581196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 152 - 262
Target Start/End: Original strand, 1603510 - 1603619
Alignment:
| Q |
152 |
ccagaaacgcataaacaaagtactagttaaatgcagaaagaaataaacaagtttatagctattacctaattaatgttgagtacaaactgcaacttgtcct |
251 |
Q |
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|||||| |||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| ||| ||||| ||| ||||||||| | |
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| T |
1603510 |
ccagaatcgcataaacaaagtac-agttaaatgcagaaacaaataaacaagtttatagctattacctaatttttgtcgagtagaaagtgcaacttgctat |
1603608 |
T |
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| Q |
252 |
tgaccctaaat |
262 |
Q |
| |
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||||||||||| |
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| T |
1603609 |
tgaccctaaat |
1603619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 101 - 261
Target Start/End: Complemental strand, 1587842 - 1587679
Alignment:
| Q |
101 |
cttctcatgctaatacaacacatgaacaggggtaaatagccaaaaccaaagccagaaacgcataaacaaa----gtactagttaaatgcagaaagaaata |
196 |
Q |
| |
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||||||| | ||| ||| ||||| |||| || |||||| |||||||||||||| ||||||||||||||| |||||||||||||||||||| |||| |
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| T |
1587842 |
cttctcaagttaacacagcacattaacatggtaaaataggcaaaaccaaagccataaacgcataaacaaagtacgtactagttaaatgcagaaaataata |
1587743 |
T |
|
| Q |
197 |
aacaagtttatagctattacctaattaatgttgagtacaaactgcaacttgtccttgaccctaaa |
261 |
Q |
| |
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||| |||||||| | || |||| ||| ||| |||||||| ||||||||||| ||||||||||| |
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| T |
1587742 |
aacgagtttataac-atcacctggttattgtcaagtacaaagtgcaacttgtcattgaccctaaa |
1587679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 75 - 169
Target Start/End: Original strand, 1614898 - 1614991
Alignment:
| Q |
75 |
atatggaaaatcaaattcctaggttccttctcatgctaatacaacacatgaacaggggtaaatagccaaaaccaaagccagaaacgcataaacaa |
169 |
Q |
| |
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|||||||||||| ||||||| || ||||| | | |||||| || |||||||||||||| |||||| ||||| |||||||| |||| ||||||||| |
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| T |
1614898 |
atatggaaaatctaattcctggggtccttttgaagctaatgcagcacatgaacaggggaaaatagacaaaaacaaagcca-aaacacataaacaa |
1614991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 152 - 204
Target Start/End: Original strand, 1614995 - 1615047
Alignment:
| Q |
152 |
ccagaaacgcataaacaaagtactagttaaatgcagaaagaaataaacaagtt |
204 |
Q |
| |
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|||||||| || |||||||| ||||||||||| |||||| ||| ||||||||| |
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| T |
1614995 |
ccagaaacacagaaacaaagcactagttaaatacagaaacaaagaaacaagtt |
1615047 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 141 - 181
Target Start/End: Original strand, 19269823 - 19269863
Alignment:
| Q |
141 |
caaaaccaaagccagaaacgcataaacaaagtactagttaa |
181 |
Q |
| |
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|||||||||||||| |||||||||||||||||||||||||| |
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| T |
19269823 |
caaaaccaaagccataaacgcataaacaaagtactagttaa |
19269863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 261
Target Start/End: Original strand, 19270025 - 19270106
Alignment:
| Q |
179 |
taaatgcagaaagaaataaacaagtttatagctattacctaattaatgttgagtacaaactgcaacttgtccttgaccctaaa |
261 |
Q |
| |
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|||||||||||| ||||||| ||||||| | || |||| |||| ||| ||||||||| ||||||||||| ||||||||||| |
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| T |
19270025 |
taaatgcagaaaataataaacgcgtttataac-atcacctgattattgtcgagtacaaagtgcaacttgtcattgaccctaaa |
19270106 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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