View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8912A_high_4 (Length: 434)
Name: NF8912A_high_4
Description: NF8912A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8912A_high_4 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 413; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 6 - 434
Target Start/End: Complemental strand, 48484626 - 48484198
Alignment:
| Q |
6 |
agtatcaaagatatagtcctgtagtgttgtgtgtaccgtgtcttcatatctccataatacttctgcgcttctttctcatttttgaaataacaaaacaaat |
105 |
Q |
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| T |
48484626 |
agtatcaaagatatagtcctgcagtgttgtgtgtaccgtgtcttcatatctccataatatttctgcgcttctttctcatttttgaaataacaaaacaaat |
48484527 |
T |
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| Q |
106 |
ttcttcagatcacggaacacaatccccaagctggaattcccatgaagttaaatcagaaacaggtgttttcctttttgcaaggtaagcatgcatttcatat |
205 |
Q |
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| T |
48484526 |
ttcttcagatcacggaacacaatccccaagctggaattcccatgaagttaaatcagaaacaggtgttttcctttttgcaaggtaagcatgcatttcatat |
48484427 |
T |
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| Q |
206 |
gaacttttacatactgaaacttccatttcttgtacatgatcaggtcttatggtgcatttcagtctcatgttctctttcaaatacatttttgaaatggaga |
305 |
Q |
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| T |
48484426 |
gaacttttacatactgaaacttccatttcttgtacatgatcaggtcttatggtacatttcagtcttatgttctctttcaaatacatttttgaaatggaga |
48484327 |
T |
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| Q |
306 |
aacttagtttacttttactttattgcctcagaaaaatatgaaccagtttatgcaaaatggacaacagagagatgtgcgatttgcagatgggtagaagatt |
405 |
Q |
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| T |
48484326 |
aacttagtttacttttactttattgcctcagaaaaatatgaaccagtttatgcaaaatggacaacagagagatgtgcgatttgcagatgggtagaagatt |
48484227 |
T |
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| Q |
406 |
gggaagataacaagattattatatgtaac |
434 |
Q |
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| T |
48484226 |
gggaagataacaagattattatatgtaac |
48484198 |
T |
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Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 342 - 424
Target Start/End: Original strand, 10036323 - 10036405
Alignment:
| Q |
342 |
tatgaaccagtttatgcaaaatggacaacagagagatgtgcgatttgcagatgggtagaagattgggaagataacaagattat |
424 |
Q |
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| T |
10036323 |
tatgagccagttcatgcaaaatggacgacagaaagatgtgctatttgtagatggatcgaagactatgaggataacaaaattat |
10036405 |
T |
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