View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8912A_low_1 (Length: 670)
Name: NF8912A_low_1
Description: NF8912A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8912A_low_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 628; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 628; E-Value: 0
Query Start/End: Original strand, 7 - 658
Target Start/End: Complemental strand, 37157964 - 37157313
Alignment:
| Q |
7 |
agatggacatcatggaagagaaaaacctctgcttataaagaggccgcatcgtggcatgaaattttcggttcaaacaatcttcagcatcactcataagaac |
106 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37157964 |
agatgggcatcatggaagagaaaaacctctgcttataaagaggccgcatcgtggcatgaaattttcggttcaaacaatcttcagcatcactcataagaac |
37157865 |
T |
|
| Q |
107 |
atgaaaagcgtccgctgcacattttcttgccagatgatcccctttatgctcttcattattttcatctaaaccttcaatcaaaggcaaggaactatttctg |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37157864 |
atgaaaagcgtccgctgcacattttcttgccaaatgatcccctttatgctcttcattattttcatctaaaccttcaatcaaaggcaaggaactatttctg |
37157765 |
T |
|
| Q |
207 |
tctgatattaagcactctgtaagtatcttagtgatgtctttaatcttttcatgaccacgcaacagtaaaccttttccaatccatgagagcccacaaactg |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37157764 |
tctgatattaagcactctgtaagtatcttagtgatgtctttaatcttttcatgaccacgcaacagtaaaccttttccaatccatgagagcccacaaactg |
37157665 |
T |
|
| Q |
307 |
cattggtttgaagtagtctatcatttgtcatgccgcgacatacgtcagtaagaacaatttcattcccattaattgatccatcacatatctgcagcatatt |
406 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| |
|
|
| T |
37157664 |
cattggtttgaagtagtctatcatttgtcatgccgagacatacgtcagtaagaacaatttcattcctattaattgatccatcacatatctgcaacatatt |
37157565 |
T |
|
| Q |
407 |
atcagaagcaaagcatatttttgtgttgaatataatatgaagagcttcttccaaggtaagttcatcagacttctctgcaccattggattttgaaatgagt |
506 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37157564 |
atcagaagaaaagcatatttttgtgttgaatataatatgaagagcttcttccaaggtaagttcatcagacttctctgcaccattggattttgaaatgagt |
37157465 |
T |
|
| Q |
507 |
ttgttgaccatagagcccaaagcctgtgcaactggaacaacacccttgaggagggttattataaaaagatgcaaaatccctcttatatttggaacgtgtg |
606 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37157464 |
ttgttgaccatagagcccaaagcctgtgcaactggaacaacacccttgaggagggttattataaaaagatgcaaaatccctcttatatttggaacgtgtg |
37157365 |
T |
|
| Q |
607 |
ttttggggcgaagtgcaataattactgatgcaaataataaaagtatcccttc |
658 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37157364 |
ttttggggcgaagtgcaataattactgatgcaaataataaaagtatcccttc |
37157313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 413; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 7 - 658
Target Start/End: Complemental strand, 43391093 - 43390439
Alignment:
| Q |
7 |
agatggacatcatggaagagaaaaacctctgcttataaagaggccgcatcgtggcatgaaattttcggttcaaacaatcttcagcatcactcataagaac |
106 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||| |||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43391093 |
agatgggcatcatggaagagaaaaacctctgcttatatagaggccgtactgtggcatgaaattttcggttcaaacaatcttcagcatcactcataagaac |
43390994 |
T |
|
| Q |
107 |
atgaaaagcgtccgctgcacattttcttgccagatgatcccctttatgctcttcattattttcatctaaaccttcaatcaaaggcaaggaactat---tt |
203 |
Q |
| |
|
||||||||| |||| |||||||| ||||||||| |||| | ||| |||| |||| |||||||| | | ||||||| ||||||| |||| | | || |
|
|
| T |
43390993 |
atgaaaagcttccgtggcacatttccttgccagaggatcacatttctgcttttcagtattttcaagtgagccttcaactaaaggcacggaagtctttctt |
43390894 |
T |
|
| Q |
204 |
ctgtctgatattaagcactctgtaagtatcttagtgatgtctttaatcttttcatgaccacgcaacagtaaaccttttccaatccatgagagcccacaaa |
303 |
Q |
| |
|
||||||||||||||||||||||||| |||| | ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
43390893 |
ctgtctgatattaagcactctgtaaatatcattgtgatatctttaatcttttcatgaccacgcaacagcaaaccttttccaatccatgagagcccacaaa |
43390794 |
T |
|
| Q |
304 |
ctgcattggtttgaagtagtctatcatttgtcatgccgcgacatacgtcagtaagaacaatttcattcccattaattgatccatcacatatctgcagcat |
403 |
Q |
| |
|
|||||| ||||||| | |||||||||||| |||||| |||||| |||||||||||||| || |||||||| ||||||||| | ||||||| | ||| |
|
|
| T |
43390793 |
tggcattgctttgaagcaatctatcatttgtgatgccgagacataaatcagtaagaacaatgtcgctcccattacttgatccattatatatctgtaacat |
43390694 |
T |
|
| Q |
404 |
attatcagaagcaaagcatatttttgtgttgaatataatatgaagagcttcttccaaggtaagttcatcagacttctctgcaccattggattttgaaatg |
503 |
Q |
| |
|
||||| ||||| ||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| || |
|
|
| T |
43390693 |
attattagaagaaaaccatatttttgtgttgaatataatatcaagagcttcttccaaggtaagttcatcagacttctctgctccattggatttcgaagtg |
43390594 |
T |
|
| Q |
504 |
agtttgttgaccatagagcccaaagcctgtgcaactggaacaacacccttgaggagggttattataaaaagatgcaaaatccctcttatatttggaacgt |
603 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| || |
|
|
| T |
43390593 |
agtttgttgagcatagagcccaaagcctgtgcaactggaacaacacccttgaggagggttattataaaaagatgcagaagccctcttatatttggaatgt |
43390494 |
T |
|
| Q |
604 |
gtgttttggggcgaagtgcaataattactgatgcaaataataaaagtatcccttc |
658 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43390493 |
gtgttttggggcgaagtgcaataattactgatgcaaataataaaagtatcccttc |
43390439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 84; Significance: 1e-39; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 7 - 138
Target Start/End: Complemental strand, 28908992 - 28908861
Alignment:
| Q |
7 |
agatggacatcatggaagagaaaaacctctgcttataaagaggccgcatcgtggcatgaaattttcggttcaaacaatcttcagcatcactcataagaac |
106 |
Q |
| |
|
|||||| |||| ||||||||||||||||| ||||||| |||||| | | |||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
28908992 |
agatgggcatcgtggaagagaaaaacctcggcttatatagaggctgtactgtggcatgaaattttcagttcaaacaatcttcagcatcactcataagaac |
28908893 |
T |
|
| Q |
107 |
atgaaaagcgtccgctgcacattttcttgcca |
138 |
Q |
| |
|
||||||||| ||||| ||||||||||||||| |
|
|
| T |
28908892 |
atgaaaagcttccgcgacacattttcttgcca |
28908861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University