View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8912A_low_107 (Length: 322)
Name: NF8912A_low_107
Description: NF8912A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8912A_low_107 |
 | |
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| [»] scaffold0029 (1 HSPs) |
| |
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| [»] scaffold0002 (2 HSPs) |
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|
| [»] chr4 (11 HSPs) |
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| [»] chr5 (4 HSPs) |
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| [»] chr1 (7 HSPs) |
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| [»] chr3 (11 HSPs) |
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| [»] chr7 (8 HSPs) |
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| [»] chr8 (5 HSPs) |
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| [»] chr2 (13 HSPs) |
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| [»] scaffold0131 (1 HSPs) |
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| [»] scaffold0418 (1 HSPs) |
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| [»] chr6 (9 HSPs) |
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| [»] scaffold0112 (1 HSPs) |
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Alignment Details
Target: scaffold0029 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: scaffold0029
Description:
Target: scaffold0029; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 6 - 322
Target Start/End: Original strand, 134449 - 134765
Alignment:
| Q |
6 |
gtttcgtgttggtggagggaggtgagtcgtcttaggggtagtgttggggccggagagagtggatggtttggtgatcttgtggctaggagggttggaggtg |
105 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||| ||| || |||||||| || |||||||||||||||||||||||||||||||||| || |
|
|
| T |
134449 |
gtttcatgttggtggagggaggtgagtcgtcttaggggtagtgatggtgctggagagaggggttggtttggtgatcttgtggctaggagggttggagatg |
134548 |
T |
|
| Q |
106 |
gagctaattcgttgttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtc |
205 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
134549 |
gagctaatacgttgttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtc |
134648 |
T |
|
| Q |
206 |
tgtggcagacttgttatctgttgattcggagcagtggggcgttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgt |
305 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
134649 |
tgtggcagacttgttatctattgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgt |
134748 |
T |
|
| Q |
306 |
agggctttacttcttga |
322 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
134749 |
agggctttacttcttga |
134765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 277; Significance: 1e-155; HSPs: 2)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 6 - 322
Target Start/End: Original strand, 312276 - 312592
Alignment:
| Q |
6 |
gtttcgtgttggtggagggaggtgagtcgtcttaggggtagtgttggggccggagagagtggatggtttggtgatcttgtggctaggagggttggaggtg |
105 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||| ||| || |||||||| || |||||||||||||||||||||||||||||||||| || |
|
|
| T |
312276 |
gtttcatgttggtggagggaggtgagtcgtcttaggggtagtgatggtgctggagagaggggttggtttggtgatcttgtggctaggagggttggagatg |
312375 |
T |
|
| Q |
106 |
gagctaattcgttgttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtc |
205 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
312376 |
gagctaatacgttgttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtc |
312475 |
T |
|
| Q |
206 |
tgtggcagacttgttatctgttgattcggagcagtggggcgttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgt |
305 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
312476 |
tgtggcagacttgttatctattgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgt |
312575 |
T |
|
| Q |
306 |
agggctttacttcttga |
322 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
312576 |
agggctttacttcttga |
312592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #2
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 6 - 322
Target Start/End: Original strand, 327730 - 328046
Alignment:
| Q |
6 |
gtttcgtgttggtggagggaggtgagtcgtcttaggggtagtgttggggccggagagagtggatggtttggtgatcttgtggctaggagggttggaggtg |
105 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||| ||| || |||||||| || |||||||||||||||||||||||||||||||||| || |
|
|
| T |
327730 |
gtttcatgttggtggagggaggtgagtcgtcttaggggtagtgatggtgctggagagaggggttggtttggtgatcttgtggctaggagggttggagatg |
327829 |
T |
|
| Q |
106 |
gagctaattcgttgttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtc |
205 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
327830 |
gagctaatacgttgttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtc |
327929 |
T |
|
| Q |
206 |
tgtggcagacttgttatctgttgattcggagcagtggggcgttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgt |
305 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
327930 |
tgtggcagacttgttatctattgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgt |
328029 |
T |
|
| Q |
306 |
agggctttacttcttga |
322 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
328030 |
agggctttacttcttga |
328046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 268; Significance: 1e-149; HSPs: 11)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 35 - 322
Target Start/End: Original strand, 8654697 - 8654984
Alignment:
| Q |
35 |
tcttaggggtagtgttggggccggagagagtggatggtttggtgatcttgtggctaggagggttggaggtggagctaattcgttgttttggttggatagg |
134 |
Q |
| |
|
|||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| |
|
|
| T |
8654697 |
tcttaggggtagtgttggtgctggagagagtggatggtttggtgatcttgtggctaggagggttggagatggagctaatacgttgttttggttggatagg |
8654796 |
T |
|
| Q |
135 |
tggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttgattcgg |
234 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8654797 |
tggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttgattcgg |
8654896 |
T |
|
| Q |
235 |
agcagtggggcgttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttcttga |
322 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8654897 |
agcagtggggggttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttcttga |
8654984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 6 - 322
Target Start/End: Original strand, 3129577 - 3129890
Alignment:
| Q |
6 |
gtttcgtgttggtggagggaggtgagtcgtcttaggggtagtgttggggccggagagagtggatggtttggtgatcttgtggctaggagggttggaggtg |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||| ||| | |||||| | || ||||||| ||||| |||||||||||||||||||| || |
|
|
| T |
3129577 |
gtttcgtgttggtggagggaggtgagtcgttttaggggtagtgatggtgatggagagggcggctggtttgttgatcatgtggctaggagggttggagatg |
3129676 |
T |
|
| Q |
106 |
gagctaattcgttgttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtc |
205 |
Q |
| |
|
||||| || | ||||||||||| | |||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
3129677 |
gagctgatacattgttttggtttggtaggtggttaggggatgttcctttttgtgtccgttttagtagactgtttgagttaacagagaataagttcatgtc |
3129776 |
T |
|
| Q |
206 |
tgtggcagacttgttatctgttgattcggagcagtggggcgttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgt |
305 |
Q |
| |
|
||||||||||||||| ||| |||||||||||||| || ||| |||||||||||||||| | |||||||||||||||||| |||||||||||||| |
|
|
| T |
3129777 |
tgtggcagacttgttctctattgattcggagcagctaggggttacgtggaggtggagacgttgtttgtggcagtgggaggag---atgttagcggagtgt |
3129873 |
T |
|
| Q |
306 |
agggctttacttcttga |
322 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
3129874 |
agggctttacttcttga |
3129890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 69 - 322
Target Start/End: Complemental strand, 47541406 - 47541154
Alignment:
| Q |
69 |
tggtttggtgatcttgtggctaggagggttggaggtggagctaattcgttgttttggttggataggtggttaggggatgttcctttttgtgtccgtttcc |
168 |
Q |
| |
|
||||||| ||||| ||||||||| ||| |||||| ||||| | || ||||||||||||| |||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
47541406 |
tggtttgttgatcatgtggctagaagg-ttggagatggagatgatacgttgttttggtttgataggtggttaggggatgttcctttttgtgttcgttttt |
47541308 |
T |
|
| Q |
169 |
gtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggcgttttgtggaggtggagacgtag |
268 |
Q |
| |
|
|||| |||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| ||| ||| ||||||||||||||||| | |
|
|
| T |
47541307 |
gtagactgtttgagttaacagagaataagttcatgtctgtggcagacttgttttctgttgattcggagcagccgggagttatgtggaggtggagacgtcg |
47541208 |
T |
|
| Q |
269 |
gttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttcttga |
322 |
Q |
| |
|
|||||||||||| ||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
47541207 |
tttgtggcagtggaaggaggagatgttagcggagtgtagggctttacttcttga |
47541154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 138 - 322
Target Start/End: Original strand, 7662966 - 7663150
Alignment:
| Q |
138 |
ttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttgattcggagc |
237 |
Q |
| |
|
|||||||||||||| || ||||||||||| ||||| |||||||||||| |||||||||| | |||||| ||||||||||||| |||||||||| ||||| |
|
|
| T |
7662966 |
ttaggggatgttccgttctgtgtccgttttcgtagattgtttgagttaatagagaataagctcatgtctatggcagacttgttctctgttgatttggagc |
7663065 |
T |
|
| Q |
238 |
agtggggcgttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttcttga |
322 |
Q |
| |
|
|| ||| |||| ||||||||||| ||||| |||||||||||||||||||| |||||| |||||||| ||||||||||||||| |
|
|
| T |
7663066 |
agcaggggtttttttggaggtggaggcgtagattgtggcagtgggaggaggagatgttagtggagtgtatggctttacttcttga |
7663150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 120 - 322
Target Start/End: Complemental strand, 2631829 - 2631627
Alignment:
| Q |
120 |
ttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgt |
219 |
Q |
| |
|
||||||| ||||||||| ||||||| | |||| ||||||| || || | || |||||||||||||||||||||||| |||||||||||| |||||| |
|
|
| T |
2631829 |
ttttggtctgataggtggataggggaggctcctctttgtgtgcggtttaggcggttgtttgagttaacagagaataagtctatgtctgtggccgacttgc |
2631730 |
T |
|
| Q |
220 |
tatctgttgattcggagcagtggggcgttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttct |
319 |
Q |
| |
|
| |||||||||||||||| |||||| | |||||||||||||||||||||| ||||||||||||||||| ||| ||| |||||||||||||||||||| |
|
|
| T |
2631729 |
tctctgttgattcggagcggtggggggaggtgtggaggtggagacgtaggttatggcagtgggaggaggagttgctagatgagtgtagggctttacttct |
2631630 |
T |
|
| Q |
320 |
tga |
322 |
Q |
| |
|
||| |
|
|
| T |
2631629 |
tga |
2631627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 119 - 322
Target Start/End: Complemental strand, 20675454 - 20675251
Alignment:
| Q |
119 |
gttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttg |
218 |
Q |
| |
|
|||||||| ||||||||||||||||| | |||| ||||||| || || | || |||||||||||||||||||||||| ||| || ||||| |||||| |
|
|
| T |
20675454 |
gttttggtctgataggtggttaggggaggctcctctttgtgtgcggtttaggcggttgtttgagttaacagagaataagtctatatccgtggccgacttg |
20675355 |
T |
|
| Q |
219 |
ttatctgttgattcggagcagtggggcgttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttc |
318 |
Q |
| |
|
| | |||||||||||||| |||||| | |||||||||||||||||||||| ||||||||||||||||| ||| | | ||||||||| ||||||||| |
|
|
| T |
20675354 |
ctctttgttgattcggagcggtggggggaggtgtggaggtggagacgtaggttatggcagtgggaggaggagttgcttgatgagtgtaggactttacttc |
20675255 |
T |
|
| Q |
319 |
ttga |
322 |
Q |
| |
|
|||| |
|
|
| T |
20675254 |
ttga |
20675251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 175 - 322
Target Start/End: Original strand, 23873240 - 23873387
Alignment:
| Q |
175 |
tgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggcgttttgtggaggtggagacgtaggttgtg |
274 |
Q |
| |
|
|||||||||||||||||||||||| |||||| || || |||||| | |||||||||||||||| |||||| | ||||||||||||||||||||| || |
|
|
| T |
23873240 |
tgtttgagttaacagagaataagtctatgtccgttgccgacttgctctctgttgattcggagcggtggggggaggtgtggaggtggagacgtaggtaatg |
23873339 |
T |
|
| Q |
275 |
gcagtgggaggaggacttgttagcggagtgtagggctttacttcttga |
322 |
Q |
| |
|
||||||||||||||| ||| ||| ||||||||||||||||||||||| |
|
|
| T |
23873340 |
gcagtgggaggaggagttgctagatgagtgtagggctttacttcttga |
23873387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 175 - 322
Target Start/End: Complemental strand, 55298996 - 55298849
Alignment:
| Q |
175 |
tgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggcgttttgtggaggtggagacgtaggttgtg |
274 |
Q |
| |
|
|||||||||||||||||||||||| |||||| || || |||||| | |||||||||||||||| |||||| | ||||||||||||||||||| || || |
|
|
| T |
55298996 |
tgtttgagttaacagagaataagtctatgtccgttgccgacttgctctctgttgattcggagcggtggggggaggtgtggaggtggagacgtagtttatg |
55298897 |
T |
|
| Q |
275 |
gcagtgggaggaggacttgttagcggagtgtagggctttacttcttga |
322 |
Q |
| |
|
||||||||||||||| ||| ||| ||||||||||||||||||||||| |
|
|
| T |
55298896 |
gcagtgggaggaggagttgctagatgagtgtagggctttacttcttga |
55298849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 129 - 322
Target Start/End: Original strand, 8486699 - 8486892
Alignment:
| Q |
129 |
gataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttg |
228 |
Q |
| |
|
||||||||| ||||||| | |||| ||||||| || || | || |||||||||||||||||||||||| |||||| || | |||||| | ||||||| |
|
|
| T |
8486699 |
gataggtggataggggaggctcctctttgtgtgcggtttaggcggttgtttgagttaacagagaataagtctatgtccgtcgtcgacttgctctctgttg |
8486798 |
T |
|
| Q |
229 |
attcggagcagtggggcgttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttcttga |
322 |
Q |
| |
|
||||||| | |||||| | |||||||||||||||||||||| |||||||||||| |||| ||| ||| |||||||||||||||||||||| |
|
|
| T |
8486799 |
attcggaccggtggggggaggtgtggaggtggagacgtaggttatggcagtgggagaaggagttgctagattagtgtagggctttacttcttga |
8486892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 48
Target Start/End: Original strand, 7662904 - 7662946
Alignment:
| Q |
6 |
gtttcgtgttggtggagggaggtgagtcgtcttaggggtagtg |
48 |
Q |
| |
|
||||||||||||||| |||||||||||||| |||||| ||||| |
|
|
| T |
7662904 |
gtttcgtgttggtggggggaggtgagtcgtattagggatagtg |
7662946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 322
Target Start/End: Original strand, 49926112 - 49926177
Alignment:
| Q |
257 |
gtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttcttga |
322 |
Q |
| |
|
|||||| || || |||||| |||||||||||| ||||||| ||||||||||||||| || ||||| |
|
|
| T |
49926112 |
gtggaggcggagattgtgggcgtgggaggaggagttgttagtggagtgtagggcttttctgcttga |
49926177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 229; Significance: 1e-126; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 6 - 322
Target Start/End: Original strand, 10486515 - 10486831
Alignment:
| Q |
6 |
gtttcgtgttggtggagggaggtgagtcgtcttaggggtagtgttggggccggagagagtggatggtttggtgatcttgtggctaggagggttggaggtg |
105 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||| | |||||| | | ||||||| ||||| |||||||||||||||||||| || |
|
|
| T |
10486515 |
gtttcgtgttggtggagggaggtgagtcgtcttaggggtagtgatggtgatggagagtgcagctggtttgttgatcatgtggctaggagggttggagatg |
10486614 |
T |
|
| Q |
106 |
gagctaattcgttgttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtc |
205 |
Q |
| |
|
||||| || |||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| |||||||||| ||||| |
|
|
| T |
10486615 |
gagctgatacgttgttttggttggataggtggttaggggatcttcctttttgtgtccgttttcgtaggctgtttgagttaacatagaataagttcatgtc |
10486714 |
T |
|
| Q |
206 |
tgtggcagacttgttatctgttgattcggagcagtggggcgttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgt |
305 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| |||| ||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
10486715 |
tgtggcagacttgttctctgttgattcggagcagcggggggttatgtggaggtggagacgtaggttgtggcagtgggaggaggacatgttagcggagtgt |
10486814 |
T |
|
| Q |
306 |
agggctttacttcttga |
322 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
10486815 |
agggctttacttcttga |
10486831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 119 - 322
Target Start/End: Complemental strand, 34481379 - 34481176
Alignment:
| Q |
119 |
gttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttg |
218 |
Q |
| |
|
|||||||| ||||||||||||||||| |||||| ||||||| | || || || |||||||||||||||||||||||| ||||||||||||| | ||| |
|
|
| T |
34481379 |
gttttggtccgataggtggttaggggaggttcctctttgtgtgaggtttagtcggttgtttgagttaacagagaataagtctatgtctgtggcatatttg |
34481280 |
T |
|
| Q |
219 |
ttatctgttgattcggagcagtggggcgttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttc |
318 |
Q |
| |
|
| |||||||||||||||| |||||| | |||||||||||||||||||||| |||||||||||||||| ||| ||| |||||||||||||||||||| |
|
|
| T |
34481279 |
ctctctgttgattcggagcggtggggggaagtgtggaggtggagacgtaggttatggcagtgggaggaggggttgctagaggagtgtagggctttacttc |
34481180 |
T |
|
| Q |
319 |
ttga |
322 |
Q |
| |
|
|||| |
|
|
| T |
34481179 |
ttga |
34481176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 208 - 322
Target Start/End: Complemental strand, 587859 - 587745
Alignment:
| Q |
208 |
tggcagacttgttatctgttgattcggagcagtggggcgttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtag |
307 |
Q |
| |
|
||||| ||||||| ||||| ||||||||| ||||| | | | ||||||||||| |||||| | ||| |||||||||||| |||||| ||||||||| |
|
|
| T |
587859 |
tggcaaacttgttctctgtgagttcggagcattggggggatgtctggaggtggaggcgtaggctatggatgtgggaggaggatatgttagaggagtgtag |
587760 |
T |
|
| Q |
308 |
ggctttacttcttga |
322 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
587759 |
ggctttacttcttga |
587745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 278 - 314
Target Start/End: Complemental strand, 27795756 - 27795720
Alignment:
| Q |
278 |
gtgggaggaggacttgttagcggagtgtagggcttta |
314 |
Q |
| |
|
|||||||||||||||| ||| |||||||||||||||| |
|
|
| T |
27795756 |
gtgggaggaggacttggtagaggagtgtagggcttta |
27795720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 183; Significance: 6e-99; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 31 - 322
Target Start/End: Complemental strand, 21528685 - 21528390
Alignment:
| Q |
31 |
gtcgtcttaggggtagtgttggggccggagagagtggatggtttggtgatcttgtggctaggagggttggaggtggagctaattcgttgttttggttgga |
130 |
Q |
| |
|
|||||||||||||||||| ||| | |||||||| |||||||||| ||||| |||||||||||||||||||| || |||| || |||||||||||||||| |
|
|
| T |
21528685 |
gtcgtcttaggggtagtgatggtgatggagagagcggatggtttgttgatcatgtggctaggagggttggagatgaagctgatacgttgttttggttgga |
21528586 |
T |
|
| Q |
131 |
taggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttgat |
230 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| | ||||||||| ||||||||| |
|
|
| T |
21528585 |
taggtggttaggggatgttcctttttgtgtccgttttcgtaggctgtttgagttaacagagaataagttcatgtctgttggagacttgttctctgttgat |
21528486 |
T |
|
| Q |
231 |
tcggagcagtggggcgttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggag----tgtagggctttacttcttga |
322 |
Q |
| |
|
|||||||| ||||| ||| |||||||||||||||||||||| ||| |||||||||||||| ||||||||| | ||||||||||||||||||| |
|
|
| T |
21528485 |
tcggagcaatggggggttatgtggaggtggagacgtaggttatggtagtgggaggaggacatgttagcggtggagacgtagggctttacttcttga |
21528390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 14 - 322
Target Start/End: Complemental strand, 36306321 - 36306013
Alignment:
| Q |
14 |
ttggtggagggaggtgagtcgtcttaggggtagtgttggggccggagagagtggatggtttggtgatcttgtggctaggagggttggaggtggagctaat |
113 |
Q |
| |
|
||||||||||||||||||||||||||| | ||||||| | | || || |||| ||||||| | | ||||||||||||||||||| ||| || || |
|
|
| T |
36306321 |
ttggtggagggaggtgagtcgtcttagtgatagtgttagtgagggtgattgtgggtggtttgtcggccacgtggctaggagggttggagatggttctgat |
36306222 |
T |
|
| Q |
114 |
tcgttgttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtctgtggcag |
213 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||| ||||||| ||| ||||| |||||||||||||| ||||||||| | |||| |||||||| |
|
|
| T |
36306221 |
acgttgttttggtatgataggtggttaggggatgttcctttctgtgtcctttttcgtagactgtttgagttaacggagaataagctcatgtatgtggcag |
36306122 |
T |
|
| Q |
214 |
acttgttatctgttgattcggagcagtggggcgttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggcttt |
313 |
Q |
| |
|
||||||| |||||||||| ||||||| ||| ||| | ||||||||||| ||||| |||||||||||| ||||||| |||||| ||||||||||||||| |
|
|
| T |
36306121 |
acttgttctctgttgatttggagcagcagggggttgtttggaggtggaggcgtagattgtggcagtggaaggaggagatgttagaggagtgtagggcttt |
36306022 |
T |
|
| Q |
314 |
acttcttga |
322 |
Q |
| |
|
||||||||| |
|
|
| T |
36306021 |
acttcttga |
36306013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 119 - 322
Target Start/End: Complemental strand, 37530998 - 37530795
Alignment:
| Q |
119 |
gttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttg |
218 |
Q |
| |
|
|||||||| ||||||||||||||||| |||||| ||||||| | | || || ||||||||||||||||||||||| ||||| ||||||||||||| |
|
|
| T |
37530998 |
gttttggtctgataggtggttaggggaggttcctctttgtgtgagacttagtcggttgtttgagttaacagagaataagactatgtatgtggcagacttg |
37530899 |
T |
|
| Q |
219 |
ttatctgttgattcggagcagtggggcgttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttc |
318 |
Q |
| |
|
| |||||||||||||||| |||||| | |||||||||||||||||||||| |||||||||||||||| ||| ||| |||||||||||||||||||| |
|
|
| T |
37530898 |
ctctctgttgattcggagcggtggggggaagtgtggaggtggagacgtaggttatggcagtgggaggaggggttgctagaggagtgtagggctttacttc |
37530799 |
T |
|
| Q |
319 |
ttga |
322 |
Q |
| |
|
|||| |
|
|
| T |
37530798 |
ttga |
37530795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 175 - 322
Target Start/End: Original strand, 32353061 - 32353208
Alignment:
| Q |
175 |
tgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggcgttttgtggaggtggagacgtaggttgtg |
274 |
Q |
| |
|
|||||||||||||||||||||||| |||||| ||||| |||||| | |||||||||||||||| |||||| | |||||||||||||||||||||| || |
|
|
| T |
32353061 |
tgtttgagttaacagagaataagtctatgtccgtggccgacttgctctctgttgattcggagcggtggggggaggtgtggaggtggagacgtaggttatg |
32353160 |
T |
|
| Q |
275 |
gcagtgggaggaggacttgttagcggagtgtagggctttacttcttga |
322 |
Q |
| |
|
||||||| ||||||| ||| ||| ||||||||||||||||||||||| |
|
|
| T |
32353161 |
gcagtggaaggaggagttgctagatgagtgtagggctttacttcttga |
32353208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 119 - 322
Target Start/End: Original strand, 48073139 - 48073342
Alignment:
| Q |
119 |
gttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttg |
218 |
Q |
| |
|
|||||||| ||||||||| ||||||| | |||| ||||||| || || | || |||||||||||||||||||||||| |||||| || || |||||| |
|
|
| T |
48073139 |
gttttggtctgataggtggataggggaggctcctctttgtgtgcggtttaggcggttgtttgagttaacagagaataagtctatgtccgttgccgacttg |
48073238 |
T |
|
| Q |
219 |
ttatctgttgattcggagcagtggggcgttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttc |
318 |
Q |
| |
|
| |||||||||||||||| |||||| | |||||||||||||||||||||| ||| ||||||||||||| ||| ||| |||||| |||||||||||| |
|
|
| T |
48073239 |
ctctctgttgattcggagcggtggggggaggtgtggaggtggagacgtaggttatgggagtgggaggaggagttgctagatgagtgtggggctttacttc |
48073338 |
T |
|
| Q |
319 |
ttga |
322 |
Q |
| |
|
|||| |
|
|
| T |
48073339 |
ttga |
48073342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 241 - 322
Target Start/End: Original strand, 48265548 - 48265629
Alignment:
| Q |
241 |
ggggcgttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttcttga |
322 |
Q |
| |
|
|||| ||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
48265548 |
ggggggttatgtggaggtggagacgtaggttgtggcagtgggaggaggagttgttagcggagtgtagggctttacttcttga |
48265629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 250 - 322
Target Start/End: Original strand, 30970447 - 30970519
Alignment:
| Q |
250 |
tgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttcttga |
322 |
Q |
| |
|
||||||||||||| ||||| |||||| |||||||||||| || | |||||||||||||| ||||||||||| |
|
|
| T |
30970447 |
tgtggaggtggaggcgtagattgtgggcgtgggaggaggagatggtggcggagtgtagggccttacttcttga |
30970519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 177; Significance: 2e-95; HSPs: 11)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 38 - 322
Target Start/End: Original strand, 49731559 - 49731843
Alignment:
| Q |
38 |
taggggtagtgttggggccggagagagtggatggtttggtgatcttgtggctaggagggttggaggtggagctaattcgttgttttggttggataggtgg |
137 |
Q |
| |
|
||||||||||| ||| | |||||| | || ||||||| ||||| |||||||||||||||||||| ||||||| | | ||||||||||| ||||||||| |
|
|
| T |
49731559 |
taggggtagtgatggtgatggagagtgcggctggtttgttgatcatgtggctaggagggttggagatggagctgacacattgttttggtttgataggtgg |
49731658 |
T |
|
| Q |
138 |
ttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttgattcggagc |
237 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |||| ||||||||||||||| ||||||||| |||||| |
|
|
| T |
49731659 |
ttaggggatgttcctttttgtgtccgttttcgtagactgtttgagttaacagagaataagttcatgtatgtggcagacttgttctctgttgatccggagc |
49731758 |
T |
|
| Q |
238 |
agtggggcgttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttcttga |
322 |
Q |
| |
|
|| |||| ||| ||||||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
49731759 |
agcggggggttatgtggaggtggagacgtagtttgtggcagtgggaggaggagttgttggcggagtgtagggctttacttcttga |
49731843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 9 - 322
Target Start/End: Original strand, 30166942 - 30167255
Alignment:
| Q |
9 |
tcgtgttggtggagggaggtgagtcgtcttaggggtagtgttggggccggagagagtggatggtttggtgatcttgtggctaggagggttggaggtggag |
108 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| ||||| ||| | || || |||| |||||||||| || ||||||||||||||||| | ||| |
|
|
| T |
30166942 |
tcgtgttggtggagggaggtgagtcgtattagggatagtgctggtgagggtgactgtgggtggtttggtggtcacgtggctaggagggttggtgatggtt |
30167041 |
T |
|
| Q |
109 |
ctaattcgttgttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtctgt |
208 |
Q |
| |
|
|| || ||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||| ||||||||||||||||||||||| | |||| ||| |
|
|
| T |
30167042 |
ctgatacgttgttttggttggataggtggttaggggatgttccgttctgtgtccgttttcgtagattgtttgagttaacagagaataagctcatgtttgt |
30167141 |
T |
|
| Q |
209 |
ggcagacttgttatctgttgattcggagcagtggggcgttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagg |
308 |
Q |
| |
|
|||||||||||| ||||||||| ||||||| ||| ||||| ||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
30167142 |
ggcagacttgttctctgttgatctggagcagcagggtgttttttggaggtggaggcgtagattgtggcagtgggaggaggagatgttagcggagtgtagg |
30167241 |
T |
|
| Q |
309 |
gctttacttcttga |
322 |
Q |
| |
|
||||||||||||| |
|
|
| T |
30167242 |
actttacttcttga |
30167255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 119 - 322
Target Start/End: Original strand, 2813208 - 2813411
Alignment:
| Q |
119 |
gttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttg |
218 |
Q |
| |
|
|||||||| ||||||||| ||||||| | |||| ||||||| || || | || |||||||||||||||||||||||| |||||| || || |||||| |
|
|
| T |
2813208 |
gttttggtctgataggtggataggggaggctcctctttgtgtgcggtttaggcggttgtttgagttaacagagaataagtctatgtccgttgccgacttg |
2813307 |
T |
|
| Q |
219 |
ttatctgttgattcggagcagtggggcgttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttc |
318 |
Q |
| |
|
| |||||||||||||||| |||||| | |||||||||||||||||||||| ||||||||||||||||| ||| ||| ||||||||||||||||||| |
|
|
| T |
2813308 |
ctctctgttgattcggagcggtggggggaggtgtggaggtggagacgtaggttatggcagtgggaggaggagttgctagatgagtgtagggctttacttc |
2813407 |
T |
|
| Q |
319 |
ttga |
322 |
Q |
| |
|
|||| |
|
|
| T |
2813408 |
ttga |
2813411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 119 - 322
Target Start/End: Complemental strand, 29309840 - 29309637
Alignment:
| Q |
119 |
gttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttg |
218 |
Q |
| |
|
|||||||| ||||||||| ||||||| | |||| ||||||| || || | || |||||||||||||||||||||||| |||||| ||||| |||||| |
|
|
| T |
29309840 |
gttttggtctgataggtggataggggaggctcctctttgtgtgcggtttaggcggttgtttgagttaacagagaataagtctatgtccgtggccgacttg |
29309741 |
T |
|
| Q |
219 |
ttatctgttgattcggagcagtggggcgttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttc |
318 |
Q |
| |
|
| ||||| |||||||||| |||||| | |||||||||||||||||||||| ||||||||||||||||| ||| ||| ||||||||||| ||||||| |
|
|
| T |
29309740 |
ctctctgtcgattcggagcggtggggggaggtgtggaggtggagacgtaggttatggcagtgggaggaggagttgctagatgagtgtagggcgttacttc |
29309641 |
T |
|
| Q |
319 |
ttga |
322 |
Q |
| |
|
|||| |
|
|
| T |
29309640 |
ttga |
29309637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 119 - 322
Target Start/End: Original strand, 6176186 - 6176389
Alignment:
| Q |
119 |
gttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttg |
218 |
Q |
| |
|
|||||||| ||||||||| ||||||| | |||| ||||||| || || | || |||||||||||| ||||||||||| |||||| || || |||||| |
|
|
| T |
6176186 |
gttttggtctgataggtggataggggaggctcctctttgtgtgcggtttagacggttgtttgagttaatagagaataagtctatgtccgtcgccgacttg |
6176285 |
T |
|
| Q |
219 |
ttatctgttgattcggagcagtggggcgttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttc |
318 |
Q |
| |
|
| |||||||||||||||| |||||| | |||||||||||||||||||||| | ||||||||||||||| ||| ||| ||||||||||||||||||| |
|
|
| T |
6176286 |
ctctctgttgattcggagcggtggggggaggtgtggaggtggagacgtaggttatagcagtgggaggaggagttgctagatgagtgtagggctttacttc |
6176385 |
T |
|
| Q |
319 |
ttga |
322 |
Q |
| |
|
|||| |
|
|
| T |
6176386 |
ttga |
6176389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 201 - 322
Target Start/End: Complemental strand, 9379447 - 9379326
Alignment:
| Q |
201 |
atgtctgtggcagacttgttatctgttgattcggagcagtggggcgttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcgg |
300 |
Q |
| |
|
|||| ||||||| ||||||| | ||||||||| ||||||||||| | ||||||||||||||| || ||||| |||||||||||||||| ||||||||| |
|
|
| T |
9379447 |
atgtatgtggcaaacttgttctatgttgattcagagcagtggggggatttgtggaggtggaggcgcaggttatggcagtgggaggaggggatgttagcgg |
9379348 |
T |
|
| Q |
301 |
agtgtagggctttacttcttga |
322 |
Q |
| |
|
|||||||||| ||||| ||||| |
|
|
| T |
9379347 |
agtgtagggcattactacttga |
9379326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 250 - 322
Target Start/End: Complemental strand, 23602074 - 23602002
Alignment:
| Q |
250 |
tgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttcttga |
322 |
Q |
| |
|
||||||||||||||| |||||| ||||||||||||||||| ||| ||| ||||||||||||||||||||||| |
|
|
| T |
23602074 |
tgtggaggtggagacataggttatggcagtgggaggaggagttgctagatgagtgtagggctttacttcttga |
23602002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 258 - 322
Target Start/End: Original strand, 25872955 - 25873019
Alignment:
| Q |
258 |
tggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttcttga |
322 |
Q |
| |
|
|||||||||||||| |||||||||||||||| ||| ||| ||||||||||||||||||| |||| |
|
|
| T |
25872955 |
tggagacgtaggttatggcagtgggaggaggggttgctagaggagtgtagggctttactttttga |
25873019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 250 - 307
Target Start/End: Complemental strand, 8943653 - 8943596
Alignment:
| Q |
250 |
tgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtag |
307 |
Q |
| |
|
|||||| ||||||||||||||||||| ||||||||| || |||| |||||||||||| |
|
|
| T |
8943653 |
tgtggaagtggagacgtaggttgtgggcgtgggaggaagatttgtaagcggagtgtag |
8943596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 279 - 317
Target Start/End: Original strand, 46248738 - 46248776
Alignment:
| Q |
279 |
tgggaggaggacttgttagcggagtgtagggctttactt |
317 |
Q |
| |
|
|||||||| |||||||||| ||||||||||||||||||| |
|
|
| T |
46248738 |
tgggaggaagacttgttaggggagtgtagggctttactt |
46248776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 278 - 316
Target Start/End: Original strand, 48569906 - 48569944
Alignment:
| Q |
278 |
gtgggaggaggacttgttagcggagtgtagggctttact |
316 |
Q |
| |
|
|||||||||||||||| ||| |||||||||||||||||| |
|
|
| T |
48569906 |
gtgggaggaggacttggtagaggagtgtagggctttact |
48569944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 174; Significance: 1e-93; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 9 - 322
Target Start/End: Original strand, 15653303 - 15653616
Alignment:
| Q |
9 |
tcgtgttggtggagggaggtgagtcgtcttaggggtagtgttggggccggagagagtggatggtttggtgatcttgtggctaggagggttggaggtggag |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||| | || || |||| ||||||| || | ||||||||||||||||||| |||| |
|
|
| T |
15653303 |
tcgtgttggtggagggaggtgagtcgtcttagggatagtgttggtgagggtgattgtgggtggtttgttggccacgtggctaggagggttggagatggat |
15653402 |
T |
|
| Q |
109 |
ctaattcgttgttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtctgt |
208 |
Q |
| |
|
|| || ||||||||||||| ||||||||||||||||||||||||||||||| |||||| ||||| |||||||||||||| ||||||||| | |||||| | |
|
|
| T |
15653403 |
ctgatacgttgttttggtttgataggtggttaggggatgttcctttttgtgcccgttttcgtagactgtttgagttaacggagaataagctcatgtctat |
15653502 |
T |
|
| Q |
209 |
ggcagacttgttatctgttgattcggagcagtggggcgttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagg |
308 |
Q |
| |
|
|||||||||||| |||||||||| ||||||| ||| ||||| ||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
15653503 |
ggcagacttgttctctgttgatttggagcagcagggggttttctggaggtggaggcgtagattgtggcagtgggaggaggagatgttagcggagtgtagg |
15653602 |
T |
|
| Q |
309 |
gctttacttcttga |
322 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
15653603 |
gctttacttcttga |
15653616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 9 - 278
Target Start/End: Complemental strand, 46624235 - 46623966
Alignment:
| Q |
9 |
tcgtgttggtggagggaggtgagtcgtcttaggggtagtgttggggccggagagagtggatggtttggtgatcttgtggctaggagggttggaggtggag |
108 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| ||||||||| | || || |||| ||||||| || || ||||||||||||||| ||| ||| |
|
|
| T |
46624235 |
tcgtgttggtggagggaggtgagtcgtattagggatagtgttggcgagggtgactgtgggtggtttgttggtcacgtggctaggagggttagagatggtt |
46624136 |
T |
|
| Q |
109 |
ctaattcgttgttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtctgt |
208 |
Q |
| |
|
|| || ||||||||||||| |||||||||||||||||||||||||| ||||||||||| || || |||||||||||||| ||||||||| | |||||||| |
|
|
| T |
46624135 |
ctgatacgttgttttggtttgataggtggttaggggatgttcctttctgtgtccgttttcgcagactgtttgagttaacggagaataagctcatgtctgt |
46624036 |
T |
|
| Q |
209 |
ggcagacttgttatctgttgattcggagcagtggggcgttttgtggaggtggagacgtaggttgtggcag |
278 |
Q |
| |
|
|||||||||||| |||||||||| ||||||| ||| |||| ||||||||||| ||||| ||||||||| |
|
|
| T |
46624035 |
ggcagacttgttctctgttgatttggagcagcagggatttttttggaggtggaggcgtagtttgtggcag |
46623966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 119 - 322
Target Start/End: Complemental strand, 13440485 - 13440282
Alignment:
| Q |
119 |
gttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttg |
218 |
Q |
| |
|
|||||||| ||||||||| ||||||| | |||| ||||||| || || | || |||||||||||||||||||||||| |||||| || || |||||| |
|
|
| T |
13440485 |
gttttggtctgataggtggataggggaggctcctctttgtgtgcggtttaggcggttgtttgagttaacagagaataagtctatgtccgttgccgacttg |
13440386 |
T |
|
| Q |
219 |
ttatctgttgattcggagcagtggggcgttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttc |
318 |
Q |
| |
|
| |||||||||||||||| |||||| | ||||||||||||||||||| || ||| ||||||||||||| ||| ||| |||||| |||||||||||| |
|
|
| T |
13440385 |
ctctctgttgattcggagcggtggggggaggtgtggaggtggagacgtagtttatggtagtgggaggaggagttgctagatgagtgttgggctttacttc |
13440286 |
T |
|
| Q |
319 |
ttga |
322 |
Q |
| |
|
|||| |
|
|
| T |
13440285 |
ttga |
13440282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 119 - 310
Target Start/End: Original strand, 12378436 - 12378627
Alignment:
| Q |
119 |
gttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttg |
218 |
Q |
| |
|
|||||||| ||||||||| |||||||||||||| | |||| || | | ||| ||||||||||||| ||||||||| | |||||||||||| | ||| |
|
|
| T |
12378436 |
gttttggtatgataggtggataggggatgttcctctctgtgagcggtatcatagactgtttgagttaatggagaataagatcatgtctgtggcaaatttg |
12378535 |
T |
|
| Q |
219 |
ttatctgttgattcggagcagtggggcgttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggc |
310 |
Q |
| |
|
|| | |||| | ||| ||| |||||| | ||||| |||| |||| || ||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
12378536 |
ttctttgttaagtcgaagcggtggggggatttgttgaggcggaggcgcaggttgtggcagtgggaggaggagatgttagcggagtgtagggc |
12378627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 250 - 322
Target Start/End: Complemental strand, 45943152 - 45943080
Alignment:
| Q |
250 |
tgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttcttga |
322 |
Q |
| |
|
|||||||||||||| |||| || ||||||||||||||||| ||| ||| |||||||||||||||||||||||| |
|
|
| T |
45943152 |
tgtggaggtggagatgtagattatggcagtgggaggaggagttgctagaggagtgtagggctttacttcttga |
45943080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 193 - 316
Target Start/End: Complemental strand, 43105669 - 43105546
Alignment:
| Q |
193 |
ataagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggcgttttgtggaggtggagacgtaggttgtggcagtgggaggaggactt |
292 |
Q |
| |
|
|||||| | |||| |||||||||||||| ||| | |||| | || ||||| | ||||||||||||||| || ||||||||||| ||||||||||| | |
|
|
| T |
43105669 |
ataagtctttgtcggtggcagacttgttctctactagttcgcaacaatggggagatttgtggaggtggaggcgcaggttgtggcaatgggaggaggagat |
43105570 |
T |
|
| Q |
293 |
gttagcggagtgtagggctttact |
316 |
Q |
| |
|
|||||| ||||||||||| ||||| |
|
|
| T |
43105569 |
gttagcagagtgtagggcgttact |
43105546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 279 - 317
Target Start/End: Original strand, 27723973 - 27724011
Alignment:
| Q |
279 |
tgggaggaggacttgttagcggagtgtagggctttactt |
317 |
Q |
| |
|
|||||||| |||||||||| ||||||||||||||||||| |
|
|
| T |
27723973 |
tgggaggaagacttgttaggggagtgtagggctttactt |
27724011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 316
Target Start/End: Complemental strand, 41339825 - 41339760
Alignment:
| Q |
251 |
gtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggctttact |
316 |
Q |
| |
|
|||||||||| || | ||||||||| |||||||||||| || |||| |||||||||| ||||||| |
|
|
| T |
41339825 |
gtggaggtggcgatgcaggttgtgggcgtgggaggaggaattattagaggagtgtaggactttact |
41339760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 157; Significance: 2e-83; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 6 - 322
Target Start/End: Complemental strand, 7452897 - 7452581
Alignment:
| Q |
6 |
gtttcgtgttggtggagggaggtgagtcgtcttaggggtagtgttggggccggagagagtggatggtttggtgatcttgtggctaggagggttggaggtg |
105 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||| | || || |||| |||||| | | ||||||||||||||||||| || |
|
|
| T |
7452897 |
gtttcgtgttggtggagggaggtgagtcgtcttagggatagtgttggtgagggtgattgtgggtggtttctcgcccacgtggctaggagggttggagatg |
7452798 |
T |
|
| Q |
106 |
gagctaattcgttgttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtc |
205 |
Q |
| |
|
| || || |||||||||||| |||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||| ||||||||| ||||||| |
|
|
| T |
7452797 |
gttctgatacgttgttttggtatgataggtggttaggggatgttcctttctgtgtccgttttcgtagactgtttgagttaacggagaataagcttatgtc |
7452698 |
T |
|
| Q |
206 |
tgtggcagacttgttatctgttgattcggagcagtggggcgttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgt |
305 |
Q |
| |
|
||||||||||||||| |||||||||| ||||||| ||| ||| | ||||||||||| ||||| ||||||||||||||||||| || |||| ||||||| |
|
|
| T |
7452697 |
tgtggcagacttgttctctgttgatttggagcagcagggggttgtttggaggtggaggcgtagattgtggcagtgggaggaggtgttattagaggagtgt |
7452598 |
T |
|
| Q |
306 |
agggctttacttcttga |
322 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
7452597 |
agggctttacttcttga |
7452581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 120 - 319
Target Start/End: Original strand, 16420719 - 16420918
Alignment:
| Q |
120 |
ttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgt |
219 |
Q |
| |
|
||||||| ||||||||| ||||||| | |||| ||||||| || || | || |||||||||||||||||||||||| |||||||||||| |||||| |
|
|
| T |
16420719 |
ttttggtctgataggtggataggggaggctcctctttgtgtgcggtttaggcggttgtttgagttaacagagaataagtctatgtctgtggccgacttgc |
16420818 |
T |
|
| Q |
220 |
tatctgttgattcggagcagtggggcgttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttct |
319 |
Q |
| |
|
| |||||||||||||||| |||||| | |||||||||||||||||||||| ||||||||||||||||| ||| ||| ||| |||||||||||||||| |
|
|
| T |
16420819 |
tctctgttgattcggagcggtggggggaggtgtggaggtggagacgtaggttatggcagtgggaggaggagttgctagatgagcgtagggctttacttct |
16420918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 251 - 316
Target Start/End: Complemental strand, 12134628 - 12134563
Alignment:
| Q |
251 |
gtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggctttact |
316 |
Q |
| |
|
|||||||||| | |||| ||||||| |||||||||||||||| ||| |||||||||||||||||| |
|
|
| T |
12134628 |
gtggaggtggcggcgtacgttgtgggcgtgggaggaggacttggtagaggagtgtagggctttact |
12134563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 273 - 322
Target Start/End: Original strand, 19384572 - 19384621
Alignment:
| Q |
273 |
tggcagtgggaggaggacttgttagcggagtgtagggctttacttcttga |
322 |
Q |
| |
|
||||||||||||||||| |||||| |||||||||||||||||||||||| |
|
|
| T |
19384572 |
tggcagtgggaggaggagatgttagtggagtgtagggctttacttcttga |
19384621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 278 - 314
Target Start/End: Original strand, 13879354 - 13879390
Alignment:
| Q |
278 |
gtgggaggaggacttgttagcggagtgtagggcttta |
314 |
Q |
| |
|
|||||||||||||||| ||| |||||||||||||||| |
|
|
| T |
13879354 |
gtgggaggaggacttggtagaggagtgtagggcttta |
13879390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 147; Significance: 2e-77; HSPs: 13)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 9 - 322
Target Start/End: Complemental strand, 45422062 - 45421748
Alignment:
| Q |
9 |
tcgtgttggtggagggaggtgagtcgtcttaggggtagtgttggggccggagagagtggatggtttggtgatcttgtggctaggagggttggaggtggag |
108 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| ||||| ||| | || || |||| |||||||||| || ||||||||||||||||| | ||| |
|
|
| T |
45422062 |
tcgtgttggtggagggaggtgagtcgtattagggatagtgctggtgagggtgactgtgggtggtttggtggtcacgtggctaggagggttggtgatggtt |
45421963 |
T |
|
| Q |
109 |
ctaattcgttgttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtctgt |
208 |
Q |
| |
|
|| || ||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||| ||||||||||||||||||||||| | |||| ||| |
|
|
| T |
45421962 |
ctgatacgttgttttggttggataggtggttaggggatgttccgttctgtgtccgttttcgtagattgtttgagttaacagagaataagctcatgtatgt |
45421863 |
T |
|
| Q |
209 |
ggcagacttgttatctgttgattcggagcag-tggggcgttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtag |
307 |
Q |
| |
|
|||||||||||| ||||||||| ||||||| |||| |||| ||||||||||| ||||| |||| ||||||||||||||| |||||||||||||||| |
|
|
| T |
45421862 |
ggcagacttgttctctgttgatctggagcagcaggggttttttttggaggtggaggcgtagattgtcgcagtgggaggaggagatgttagcggagtgtag |
45421763 |
T |
|
| Q |
308 |
ggctttacttcttga |
322 |
Q |
| |
|
|||||| |||||||| |
|
|
| T |
45421762 |
ggcttttcttcttga |
45421748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 4 - 322
Target Start/End: Complemental strand, 13550671 - 13550353
Alignment:
| Q |
4 |
gagtttcgtgttggtggagggaggtgagtcgtcttaggggtagtgttggggccggagagagtggatggtttggtgatcttgtggctaggagggttggagg |
103 |
Q |
| |
|
||||||| ||||||||| |||||||||||||||||||||||| ||||| | || | || || ||||||| |||| ||| ||||| ||||| | |
|
|
| T |
13550671 |
gagtttcttgttggtggtcggaggtgagtcgtcttaggggtagggttggtgttggtggtagcggctggtttgaggatcaggtgttgaggagagttggtga |
13550572 |
T |
|
| Q |
104 |
tggagctaattcgttgttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatg |
203 |
Q |
| |
|
||| || || | | |||||||| ||||||||| ||||||| | |||| || |||| | || || || |||||||||||||||||||||||| ||| |
|
|
| T |
13550571 |
tggggcagatacatcattttggttcgataggtggataggggaggctcctcttcgtgtgaggtttagtcggttgtttgagttaacagagaataagtctata |
13550472 |
T |
|
| Q |
204 |
tctgtggcagacttgttatctgttgattcggagcagtggggcgttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagt |
303 |
Q |
| |
|
| ||||| |||||| | ||||||||||||||||||||||| | | |||||||||||||||||||||| ||||||||||| ||||||||| ||| ||||| |
|
|
| T |
13550471 |
ttcgtggcggacttgctttctgttgattcggagcagtggggggatgtgtggaggtggagacgtaggttatggcagtgggatgaggacttgctagaggagt |
13550372 |
T |
|
| Q |
304 |
gtagggctttacttcttga |
322 |
Q |
| |
|
| ||||||||| ||||||| |
|
|
| T |
13550371 |
gcagggctttaattcttga |
13550353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 119 - 321
Target Start/End: Original strand, 26894320 - 26894522
Alignment:
| Q |
119 |
gttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttg |
218 |
Q |
| |
|
|||||||| ||||||||| ||||||| | |||| ||||||| || || | || |||||||||||||||||||||||| ||||||||| | |||||| |
|
|
| T |
26894320 |
gttttggtctgataggtggataggggaggctcctctttgtgtgcggtttaggcggttgtttgagttaacagagaataagtctatgtctgtcaccgacttg |
26894419 |
T |
|
| Q |
219 |
ttatctgttgattcggagcagtggggcgttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttc |
318 |
Q |
| |
|
| ||||||| |||||||| |||||| |||||||||||||||||||||| ||||||||||||||||| ||| ||| ||||||||||||||||||| |
|
|
| T |
26894420 |
ctctctgttgcttcggagcggtgggggaaggtgtggaggtggagacgtaggttatggcagtgggaggaggagttgctagatgagtgtagggctttacttc |
26894519 |
T |
|
| Q |
319 |
ttg |
321 |
Q |
| |
|
||| |
|
|
| T |
26894520 |
ttg |
26894522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 119 - 321
Target Start/End: Original strand, 26899759 - 26899961
Alignment:
| Q |
119 |
gttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttg |
218 |
Q |
| |
|
|||||||| ||||||||| ||||||| | |||| ||||||| || || | || |||||||||||||||||||||||| ||||||||| | |||||| |
|
|
| T |
26899759 |
gttttggtctgataggtggataggggaggctcctctttgtgtgcggtttaggcggttgtttgagttaacagagaataagtctatgtctgtcaccgacttg |
26899858 |
T |
|
| Q |
219 |
ttatctgttgattcggagcagtggggcgttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttc |
318 |
Q |
| |
|
| ||||||| |||||||| |||||| |||||||||||||||||||||| ||||||||||||||||| ||| ||| ||||||||||||||||||| |
|
|
| T |
26899859 |
ctctctgttgcttcggagcggtgggggaaggtgtggaggtggagacgtaggttatggcagtgggaggaggagttgctagatgagtgtagggctttacttc |
26899958 |
T |
|
| Q |
319 |
ttg |
321 |
Q |
| |
|
||| |
|
|
| T |
26899959 |
ttg |
26899961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 175 - 322
Target Start/End: Complemental strand, 43627875 - 43627728
Alignment:
| Q |
175 |
tgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggcgttttgtggaggtggagacgtaggttgtg |
274 |
Q |
| |
|
|||||||||||||||||||||||| ||||| ||||| |||||| | ||| ||||||||||| |||||| | |||||||||||||||||||||| || |
|
|
| T |
43627875 |
tgtttgagttaacagagaataagtctatgttcgtggccgacttgctctctattgattcggagaggtggggggaggtgtggaggtggagacgtaggttatg |
43627776 |
T |
|
| Q |
275 |
gcagtgggaggaggacttgttagcggagtgtagggctttacttcttga |
322 |
Q |
| |
|
||||||||||||||| ||| ||| ||||||||||||||||||||||| |
|
|
| T |
43627775 |
gcagtgggaggaggagttgctagatgagtgtagggctttacttcttga |
43627728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 226 - 322
Target Start/End: Original strand, 31085452 - 31085548
Alignment:
| Q |
226 |
ttgattcggagcagtggggcgttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttcttga |
322 |
Q |
| |
|
||||||| ||||||||||| | | |||||||||||||| | |||||||| |||||||||||||| ||||||| ||||||||||||||||||||||| |
|
|
| T |
31085452 |
ttgattcagagcagtggggggatgtgtggaggtggagatgcaggttgtgacagtgggaggaggagctgttagcagagtgtagggctttacttcttga |
31085548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 226 - 322
Target Start/End: Complemental strand, 33548197 - 33548101
Alignment:
| Q |
226 |
ttgattcggagcagtggggcgttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttcttga |
322 |
Q |
| |
|
|||||||||||| |||||| | |||||||||||||||||||||| ||||||||||||||||| ||| ||| ||||||||||||||||||||||| |
|
|
| T |
33548197 |
ttgattcggagcggtggggggaggtgtggaggtggagacgtaggttatggcagtgggaggaggagttgctagatgagtgtagggctttacttcttga |
33548101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 4 - 244
Target Start/End: Complemental strand, 13551124 - 13550884
Alignment:
| Q |
4 |
gagtttcgtgttggtggagggaggtgagtcgtcttaggggtagtgttggggccggagagagtggatggtttggtgatcttgtggctaggagggttggagg |
103 |
Q |
| |
|
||||||| ||||||||| |||||||||||||||||||||||| ||||| | || | || || ||||||| |||| ||| ||||| ||||| | |
|
|
| T |
13551124 |
gagtttcttgttggtggtcggaggtgagtcgtcttaggggtagggttggtgttggtggtagcggctggtttgaggatcaggtgttgaggagagttggtga |
13551025 |
T |
|
| Q |
104 |
tggagctaattcgttgttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatg |
203 |
Q |
| |
|
||| || || | | |||||||| ||||||||| ||||||| | |||| || |||| | || || || |||||||||||||||||||||||| ||| |
|
|
| T |
13551024 |
tggggcagatacatcattttggttcgataggtggataggggaggctcctcttcgtgtgaggtttagtcggttgtttgagttaacagagaataagtctata |
13550925 |
T |
|
| Q |
204 |
tctgtggcagacttgttatctgttgattcggagcagtgggg |
244 |
Q |
| |
|
| ||||| |||||| | ||||||||||||||||||||||| |
|
|
| T |
13550924 |
ttcgtggcggacttgctttctgttgattcggagcagtgggg |
13550884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 267 - 322
Target Start/End: Complemental strand, 22052911 - 22052856
Alignment:
| Q |
267 |
aggttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttcttga |
322 |
Q |
| |
|
||||| ||||||||||||||||| ||| ||| |||||||||||||||||||||||| |
|
|
| T |
22052911 |
aggttatggcagtgggaggaggagttgctagaggagtgtagggctttacttcttga |
22052856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 267 - 316
Target Start/End: Complemental strand, 36804196 - 36804147
Alignment:
| Q |
267 |
aggttgtggcagtgggaggaggacttgttagcggagtgtagggctttact |
316 |
Q |
| |
|
||||||||| |||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
36804196 |
aggttgtgggcgtgggaggaggacttgttagaggagtgtagggctttact |
36804147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 278 - 316
Target Start/End: Complemental strand, 36804400 - 36804362
Alignment:
| Q |
278 |
gtgggaggaggacttgttagcggagtgtagggctttact |
316 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
36804400 |
gtgggaggaggacttgttagaggagtgtagggctttact |
36804362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 161
Target Start/End: Complemental strand, 26679266 - 26679225
Alignment:
| Q |
120 |
ttttggttggataggtggttaggggatgttcctttttgtgtc |
161 |
Q |
| |
|
|||||||||||||||||| | || |||||||||||||||||| |
|
|
| T |
26679266 |
ttttggttggataggtgggttggtgatgttcctttttgtgtc |
26679225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 278 - 314
Target Start/End: Complemental strand, 40176941 - 40176905
Alignment:
| Q |
278 |
gtgggaggaggacttgttagcggagtgtagggcttta |
314 |
Q |
| |
|
|||||||||||||||| ||| |||||||||||||||| |
|
|
| T |
40176941 |
gtgggaggaggacttggtagaggagtgtagggcttta |
40176905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0131 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: scaffold0131
Description:
Target: scaffold0131; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 6 - 199
Target Start/End: Original strand, 4144 - 4337
Alignment:
| Q |
6 |
gtttcgtgttggtggagggaggtgagtcgtcttaggggtagtgttggggccggagagagtggatggtttggtgatcttgtggctaggagggttggaggtg |
105 |
Q |
| |
|
|||||||| ||||||||||||||||||||| |||||||||||| ||| | |||||||| || ||||||| ||||| ||||||| |||||||||||| || |
|
|
| T |
4144 |
gtttcgtggtggtggagggaggtgagtcgtattaggggtagtgatggtgatggagagagcggttggtttgttgatcatgtggctcggagggttggagatg |
4243 |
T |
|
| Q |
106 |
gagctaattcgttgttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtt |
199 |
Q |
| |
|
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| |
|
|
| T |
4244 |
gagctcatacgttgttttggttggataggtggttaggggatgttcctttttgtgtccgttttcgtaggctgtttgagttaatagagaataagtt |
4337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0418 (Bit Score: 97; Significance: 1e-47; HSPs: 1)
Name: scaffold0418
Description:
Target: scaffold0418; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 138 - 322
Target Start/End: Complemental strand, 8088 - 7904
Alignment:
| Q |
138 |
ttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttgattcggagc |
237 |
Q |
| |
|
|||||||||||||| || ||||||||||| ||||| |||||||||||| |||||||||| | |||||| ||||||||||||| |||||||||| ||||| |
|
|
| T |
8088 |
ttaggggatgttccgttctgtgtccgttttcgtagattgtttgagttaatagagaataagctcatgtctatggcagacttgttctctgttgatttggagc |
7989 |
T |
|
| Q |
238 |
agtggggcgttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttcttga |
322 |
Q |
| |
|
|| ||| |||| ||||||||||| ||||| |||||||||||||||||||| |||||| |||||||| ||||||||||||||| |
|
|
| T |
7988 |
agcaggggtttttttggaggtggaggcgtagattgtggcagtgggaggaggagatgttagtggagtgtatggctttacttcttga |
7904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 92; Significance: 1e-44; HSPs: 9)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 175 - 322
Target Start/End: Complemental strand, 25318230 - 25318083
Alignment:
| Q |
175 |
tgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggcgttttgtggaggtggagacgtaggttgtg |
274 |
Q |
| |
|
|||||||||||||| |||||||||||||||| ||||| |||||| ||||||||||||| ||| |||||| | |||||||||||||| ||||||||| || |
|
|
| T |
25318230 |
tgtttgagttaacaaagaataagtttatgtccgtggcggacttgctatctgttgattcaaagcggtggggggatttgtggaggtggatacgtaggttatg |
25318131 |
T |
|
| Q |
275 |
gcagtgggaggaggacttgttagcggagtgtagggctttacttcttga |
322 |
Q |
| |
|
||||||||||||||| ||| ||| |||||||||||||||||||||||| |
|
|
| T |
25318130 |
gcagtgggaggaggagttgctagaggagtgtagggctttacttcttga |
25318083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 175 - 322
Target Start/End: Complemental strand, 26205724 - 26205577
Alignment:
| Q |
175 |
tgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggcgttttgtggaggtggagacgtaggttgtg |
274 |
Q |
| |
|
|||||||||||||| |||||||||||||||| ||||| |||||| ||||||||||||| ||| |||||| | |||||||||||||| ||||||||| || |
|
|
| T |
26205724 |
tgtttgagttaacaaagaataagtttatgtccgtggcggacttgctatctgttgattcaaagcggtggggggatttgtggaggtggatacgtaggttatg |
26205625 |
T |
|
| Q |
275 |
gcagtgggaggaggacttgttagcggagtgtagggctttacttcttga |
322 |
Q |
| |
|
||||||||||||||| ||| ||| |||||||||||||||||||||||| |
|
|
| T |
26205624 |
gcagtgggaggaggagttgctagaggagtgtagggctttacttcttga |
26205577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 119 - 322
Target Start/End: Original strand, 23347175 - 23347378
Alignment:
| Q |
119 |
gttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttg |
218 |
Q |
| |
|
|||||||| ||||||||| ||||||| | |||| ||||||| || || | || |||||||||||||||||||||||| |||||| || || |||||| |
|
|
| T |
23347175 |
gttttggtctgataggtggataggggaggctcctctttgtgtgcggtttaggcggttgtttgagttaacagagaataagtctatgtccgtcgccgacttg |
23347274 |
T |
|
| Q |
219 |
ttatctgttgattcggagcagtggggcgttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttc |
318 |
Q |
| |
|
| |||||||||||||||| |||||| | |||||||||||||||||||||| ||||||||||||||||| ||| ||| ||||||||||||||||||| |
|
|
| T |
23347275 |
ctctctgttgattcggagcggtggggggaggtgtggaggtggagacgtaggttatggcagtgggaggaggagttgctagatgagtgtagggctttacttc |
23347374 |
T |
|
| Q |
319 |
ttga |
322 |
Q |
| |
|
|||| |
|
|
| T |
23347375 |
ttga |
23347378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 175 - 322
Target Start/End: Complemental strand, 15674205 - 15674054
Alignment:
| Q |
175 |
tgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggc----gttttgtggaggtggagacgtaggt |
270 |
Q |
| |
|
||||||||||||| |||||||||| |||||||||||| ||||| | ||||||||||| |||| |||||| | ||||||||||||||||||||| |
|
|
| T |
15674205 |
tgtttgagttaacggagaataagtctatgtctgtggccgacttactctctgttgattcagagcgttggggccggggaggtgtggaggtggagacgtaggt |
15674106 |
T |
|
| Q |
271 |
tgtggcagtgggaggaggacttgttagcggagtgtagggctttacttcttga |
322 |
Q |
| |
|
||||||||||||||||||| ||| ||| ||||| ||||||||||||||||| |
|
|
| T |
15674105 |
tgtggcagtgggaggaggagttgctagatgagtgcagggctttacttcttga |
15674054 |
T |
|
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Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 270 - 314
Target Start/End: Complemental strand, 33630378 - 33630334
Alignment:
| Q |
270 |
ttgtggcagtgggaggaggacttgttagcggagtgtagggcttta |
314 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
33630378 |
ttgtggcagtgggaggaggagatgttagcggagtgtagggcttta |
33630334 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 52
Target Start/End: Complemental strand, 26205895 - 26205847
Alignment:
| Q |
4 |
gagtttcgtgttggtggagggaggtgagtcgtcttaggggtagtgttgg |
52 |
Q |
| |
|
||||||| ||||||||| |||||||||||||||||||||||| ||||| |
|
|
| T |
26205895 |
gagtttcttgttggtggtcggaggtgagtcgtcttaggggtagggttgg |
26205847 |
T |
|
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Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 251 - 314
Target Start/End: Complemental strand, 4474998 - 4474935
Alignment:
| Q |
251 |
gtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggcttta |
314 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||| | || |||| ||||| |||| ||||| |
|
|
| T |
4474998 |
gtggaggtggagacgtaggttgtgggcgtgggaggagaatttattagaggagtttaggacttta |
4474935 |
T |
|
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Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 292 - 322
Target Start/End: Complemental strand, 1683299 - 1683269
Alignment:
| Q |
292 |
tgttagcggagtgtagggctttacttcttga |
322 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
1683299 |
tgttagcggagtgtagggctttacttcttga |
1683269 |
T |
|
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Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 52
Target Start/End: Complemental strand, 25318401 - 25318353
Alignment:
| Q |
4 |
gagtttcgtgttggtggagggaggtgagtcgtcttaggggtagtgttgg |
52 |
Q |
| |
|
||||||| ||||||||| ||||||||||||||||||| |||| ||||| |
|
|
| T |
25318401 |
gagtttcttgttggtggtcggaggtgagtcgtcttaggtgtagggttgg |
25318353 |
T |
|
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Target: scaffold0112 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0112
Description:
Target: scaffold0112; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 316
Target Start/End: Original strand, 15490 - 15555
Alignment:
| Q |
251 |
gtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggctttact |
316 |
Q |
| |
|
|||||||||| | || || |||||| |||||||||||| |||||| |||||||||||||||||| |
|
|
| T |
15490 |
gtggaggtggcgtcgcagattgtgggcgtgggaggaggatatgttagaggagtgtagggctttact |
15555 |
T |
|
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