View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8912A_low_112 (Length: 313)
Name: NF8912A_low_112
Description: NF8912A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8912A_low_112 |
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Alignment Details
Target: chr3 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 4 - 312
Target Start/End: Original strand, 9215039 - 9215347
Alignment:
| Q |
4 |
atagatcatatttagtttgcttaaatgtagcattatacatctttatatgtgatttttaaacttgttgaatcaaagatgtatgacaattgacgtgcatact |
103 |
Q |
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| T |
9215039 |
atagagcatatttagtttgcttaaatgtagcattgtacatctttttatgtgatttttaaacttgttgaatcaaagatgtatgacaattgacgtgcatact |
9215138 |
T |
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| Q |
104 |
ttacttataggtattaacgagtacagtgatcctacactatcagtccaagaatcgctcatggacacttttcggattgattaccattatcgtcatctatact |
203 |
Q |
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| T |
9215139 |
ttacttataggtattaacgagtacagtgatcctacactatcagtccaagaatcgctcatggacacttttcggattgattaccattatcgtcatctatact |
9215238 |
T |
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| Q |
204 |
atcttcgatccgcacttgagtaagtagtcttttacatctataaaaggtttctctatttttcgccaatcaatttaacgatgttctaaaccattttcattta |
303 |
Q |
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|||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |
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| T |
9215239 |
atcttcgatccgcaattgagtaagtagtcttttacatctctaaaaggtttctctatttttcgccaatcaatttaacgattttctaaaccattttccttta |
9215338 |
T |
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| Q |
304 |
aatatgtat |
312 |
Q |
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| T |
9215339 |
aatatgtat |
9215347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 152 - 213
Target Start/End: Complemental strand, 25159163 - 25159102
Alignment:
| Q |
152 |
gaatcgctcatggacacttttcggattgattaccattatcgtcatctatactatcttcgatc |
213 |
Q |
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| T |
25159163 |
gaatcactcttggatacttttcgaattgattaccattaccgtcatctattttatcttcgatc |
25159102 |
T |
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