View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8912A_low_113 (Length: 311)
Name: NF8912A_low_113
Description: NF8912A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8912A_low_113 |
 | |
|
| [»] scaffold0491 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 188; Significance: 1e-102; HSPs: 15)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 14 - 305
Target Start/End: Original strand, 2338377 - 2338668
Alignment:
| Q |
14 |
atggttgtgagcgaaaagggtgatgtatatagctttggagtagtggcacttgaaactttaataggaagacaccctggtgatatactgtcatcacttcagt |
113 |
Q |
| |
|
||||||||||| |||||| | ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| ||||||| |
|
|
| T |
2338377 |
atggttgtgagtgaaaagtgcgatgtatatagttttggagtagtggcacttgaaactttaatgggaagacaccctggtgatatactatcatagcttcagt |
2338476 |
T |
|
| Q |
114 |
tagcatcgactcaaggcatgaaattatgtgaagtattagaccagcgtctcccacttccaaataatgtgaaggttttacttgacataattcgtgttgctgt |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
2338477 |
tagcatcgactcaaggcatgaaattatgtgaagtattagaccagcgtctcccacttccaaataatgtgaaggttttacttgacataattcgtgttgccgt |
2338576 |
T |
|
| Q |
214 |
agtcgcatttacatgcttaaatctcaaccctcgctctcgaccagaaatgaagtgtgtgttgaagagtttcgtcacagagcttacaccgttaa |
305 |
Q |
| |
|
||| |||||| ||||||||||||||||||| || |||||||| |||||| |||||| ||||||| ||| ||||| || |||| |||| |
|
|
| T |
2338577 |
agtagcatttggatgcttaaatctcaacccttgcgctcgaccatcaatgaaaagtgtgtcacagagttttgtcccagagattgcaccattaa |
2338668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 14 - 300
Target Start/End: Original strand, 2330521 - 2330807
Alignment:
| Q |
14 |
atggttgtgagcgaaaagggtgatgtatatagctttggagtagtggcacttgaaactttaataggaagacaccctggtgatatactgtcatcacttcagt |
113 |
Q |
| |
|
||||||||||| |||||| | ||||||||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2330521 |
atggttgtgagtgaaaagtgcgatgtatatagttttggagttgtggcacttgaaactttaatgggaagacaccctggtgatatactgtcatcacttcagt |
2330620 |
T |
|
| Q |
114 |
tagcatcgactcaaggcatgaaattatgtgaagtattagaccagcgtctcccacttccaaataatgtgaaggttttacttgacataattcgtgttgctgt |
213 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||| || |
|
|
| T |
2330621 |
tagcatcgactcaagggatgaaattatgtgaagtattagaccaacgtctcccacttccaaataatgtaaaggttttactggacataattcgtgttgccgt |
2330720 |
T |
|
| Q |
214 |
agtcgcatttacatgcttaaatctcaaccctcgctctcgaccagaaatgaagtgtgtgttgaagagtttcgtcacagagcttacacc |
300 |
Q |
| |
|
||| |||||| ||||||||||||||||||| || |||||||| |||||| |||||| ||||||| |||| ||||||| |||| |
|
|
| T |
2330721 |
agtagcatttggatgcttaaatctcaacccttgcgctcgaccatcaatgaaaagtgtgtcacagagttttgtcatagagcttgcacc |
2330807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 9 - 269
Target Start/End: Original strand, 2321902 - 2322162
Alignment:
| Q |
9 |
atactatggttgtgagcgaaaagggtgatgtatatagctttggagtagtggcacttgaaactttaataggaagacaccctggtgatatactgtcatcact |
108 |
Q |
| |
|
|||||||||||||||| |||||| | |||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
2321902 |
atactatggttgtgagtgaaaagtgcgatgtatatagctttggagttgtggcacttgaaactttaatgggaagacaccctggtgatatactgtcatcact |
2322001 |
T |
|
| Q |
109 |
tcagttagcatcgactcaaggcatgaaattatgtgaagtattagaccagcgtctcccacttccaaataatgtgaaggttttacttgacataattcgtgtt |
208 |
Q |
| |
|
|||||||||||| ||||||||||| || |||||||||||||||||||| ||||| | |||||| |||||||||| ||||||||||||||||||||||||| |
|
|
| T |
2322002 |
tcagttagcatcaactcaaggcattaagttatgtgaagtattagaccaacgtcttctacttccgaataatgtgatggttttacttgacataattcgtgtt |
2322101 |
T |
|
| Q |
209 |
gctgtagtcgcatttacatgcttaaatctcaaccctcgctctcgaccagaaatgaagtgtg |
269 |
Q |
| |
|
|| | | |||||| | |||||||||||||| ||| |||||||||| |||||| |||| |
|
|
| T |
2322102 |
gccacaatagcatttgcttgcttaaatctcaatcctttctctcgaccaacaatgaaatgtg |
2322162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 9 - 236
Target Start/End: Complemental strand, 3954727 - 3954500
Alignment:
| Q |
9 |
atactatggttgtgagcgaaaagggtgatgtatatagctttggagtagtggcacttgaaactttaataggaagacaccctggtgatatactgtcatcact |
108 |
Q |
| |
|
||||||||||||| || ||||| ||||||||||||| |||||||||||||||||||||| |||| | |||||| | || | || ||| |||||||||| |
|
|
| T |
3954727 |
atactatggttgtaagtgaaaaatgtgatgtatatagttttggagtagtggcacttgaaattttagtgggaagatatcccgaggaaatattgtcatcact |
3954628 |
T |
|
| Q |
109 |
tcagttagcatcgactcaaggcatgaaattatgtgaagtattagaccagcgtctcccacttccaaataatgtgaaggttttacttgacataattcgtgtt |
208 |
Q |
| |
|
||| ||| |||| ||||||| ||| ||||||||||||||||||||||| |||||||||||||||||| ||||||| ||||||||||||||||||| |||| |
|
|
| T |
3954627 |
tcaattaacatcaactcaagacatcaaattatgtgaagtattagaccaacgtctcccacttccaaatgatgtgaaagttttacttgacataattcatgtt |
3954528 |
T |
|
| Q |
209 |
gctgtagtcgcatttacatgcttaaatc |
236 |
Q |
| |
|
| |||||| |||| | |||||||||||| |
|
|
| T |
3954527 |
gttgtagtagcatctgcatgcttaaatc |
3954500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 9 - 256
Target Start/End: Original strand, 1089243 - 1089490
Alignment:
| Q |
9 |
atactatggttgtgagcgaaaagggtgatgtatatagctttggagtagtggcacttgaaactttaataggaagacaccctggtgatatactgtcatcact |
108 |
Q |
| |
|
||||||||| |||||| |||||| ||||||||||||| ||||| ||||||||||||||||||||| | ||||| ||||||| |||||| ||||||| || |
|
|
| T |
1089243 |
atactatggctgtgagtgaaaagtgtgatgtatatagttttggtgtagtggcacttgaaactttagttggaaggcaccctgaagatatattgtcatccct |
1089342 |
T |
|
| Q |
109 |
tcagttagcatcgactcaaggcatgaaattatgtgaagtattagaccagcgtctcccacttccaaataatgtgaaggttttacttgacataattcgtgtt |
208 |
Q |
| |
|
||| | | ||||||| ||| | || ||||||||| ||||||||||||| ||||| |||||||||| ||| | | | | | | ||||||||||| |||| |
|
|
| T |
1089343 |
tcaatcaacatcgacacaaagtatcaaattatgtcaagtattagaccaacgtcttccacttccaagtaaagaaatagctatccatgacataattcatgtt |
1089442 |
T |
|
| Q |
209 |
gctgtagtcgcatttacatgcttaaatctcaaccctcgctctcgacca |
256 |
Q |
| |
|
|| || || |||||| |||||||||||||||| ||||| ||||||||| |
|
|
| T |
1089443 |
gccgtggtagcatttgcatgcttaaatctcaatcctcgttctcgacca |
1089490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 9 - 305
Target Start/End: Complemental strand, 1556975 - 1556679
Alignment:
| Q |
9 |
atactatggttgtgagcgaaaagggtgatgtatatagctttggagtagtggcacttgaaactttaataggaagacaccctggtgatatactgtcatcact |
108 |
Q |
| |
|
||||||||||||||| |||||| |||||| |||||| ||||| || || ||||||||||||||| | ||||| || ||||| ||| ||||||||||||| |
|
|
| T |
1556975 |
atactatggttgtgaatgaaaagtgtgatgcatatagttttggtgttgtagcacttgaaactttagttggaaggcatcctggagatttactgtcatcact |
1556876 |
T |
|
| Q |
109 |
tcagttagcatcgactcaaggcatgaaattatgtgaagtattagaccagcgtctcccacttccaaataatgtgaaggttttacttgacataattcgtgtt |
208 |
Q |
| |
|
||||| | ||||||| | | | | ||| ||||| ||||||||||||||||||| |||||||||||||||| | ||| ||| ||||||||||| |||| |
|
|
| T |
1556875 |
tcagtcaacatcgacacgaagtgtcaaactatgtcaagtattagaccagcgtcttccacttccaaataatgacatagttatacgtgacataattcatgtt |
1556776 |
T |
|
| Q |
209 |
gctgtagtcgcatttacatgcttaaatctcaaccctcgctctcgaccagaaatgaagtgtgtgttgaagagtttcgtcacagagcttacaccgttaa |
305 |
Q |
| |
|
| || || |||||| ||||||||||| |||| |||| ||||||||| |||||| |||||| | ||||| ||||| || |||||||| |||| |
|
|
| T |
1556775 |
gtcgtggttgcatttgcatgcttaaatatcaatcctcattctcgaccaacaatgaaacgtgtgtcacaaagttttgtcactgaacttacaccattaa |
1556679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 9 - 305
Target Start/End: Original strand, 1596996 - 1597292
Alignment:
| Q |
9 |
atactatggttgtgagcgaaaagggtgatgtatatagctttggagtagtggcacttgaaactttaataggaagacaccctggtgatatactgtcatcact |
108 |
Q |
| |
|
||||||||| |||| |||||| ||||||||||||||||||| || |||||||||||||||||| | ||||| |||||||| ||| || |||||||||| |
|
|
| T |
1596996 |
atactatggcggtgaatgaaaagtgtgatgtatatagctttggcgtggtggcacttgaaactttagttggaaggcaccctggggatttattgtcatcact |
1597095 |
T |
|
| Q |
109 |
tcagttagcatcgactcaaggcatgaaattatgtgaagtattagaccagcgtctcccacttccaaataatgtgaaggttttacttgacataattcgtgtt |
208 |
Q |
| |
|
||| | | ||||||| ||| | | ||| ||||| ||||||||||||| ||||| |||||||||||||||| || ||| ||| | ||||||||| |||| |
|
|
| T |
1597096 |
tcaatcatcatcgacacaaagtctcaaactatgtcaagtattagaccaacgtcttccacttccaaataatgagatagttatacgtcacataattcatgtt |
1597195 |
T |
|
| Q |
209 |
gctgtagtcgcatttacatgcttaaatctcaaccctcgctctcgaccagaaatgaagtgtgtgttgaagagtttcgtcacagagcttacaccgttaa |
305 |
Q |
| |
|
|| |||| |||||| ||||||||| | | | ||||| ||||||||| |||||| |||||| | ||||| ||||| ||||||||||| |||| |
|
|
| T |
1597196 |
gccatagttgcatttgcatgcttaactattgatcctcgttctcgaccaacaatgaaacgtgtgtcacaaagttttgtcaccgagcttacaccattaa |
1597292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 9 - 272
Target Start/End: Complemental strand, 1550155 - 1549892
Alignment:
| Q |
9 |
atactatggttgtgagcgaaaagggtgatgtatatagctttggagtagtggcacttgaaactttaataggaagacaccctggtgatatactgtcatcact |
108 |
Q |
| |
|
||||||||| ||||| || ||| ||||||||||||| ||||| ||||||||||||||||| ||| | |||| ||||||| |||||| || ||||||| |
|
|
| T |
1550155 |
atactatggctgtgaatgagaagtgtgatgtatatagttttggtgtagtggcacttgaaacattagttggaaagcaccctgaggatatattggcatcact |
1550056 |
T |
|
| Q |
109 |
tcagttagcatcgactcaaggcatgaaattatgtgaagtattagaccagcgtctcccacttccaaataatgtgaaggttttacttgacataattcgtgtt |
208 |
Q |
| |
|
||| | ||||||| ||| | || ||||||||| ||||||||||||| ||| | |||||||||||||||| | ||| ||| ||||||||||| ||| |
|
|
| T |
1550055 |
tcaatctccatcgacacaaagtatcaaattatgtcaagtattagaccaacgtattccacttccaaataatgaaatagttatacgtgacataattcaagtt |
1549956 |
T |
|
| Q |
209 |
gctgtagtcgcatttacatgcttaaatctcaaccctcgctctcgaccagaaatgaagtgtgtgt |
272 |
Q |
| |
|
|| || || |||||| |||| ||||||||||| ||||||||||||||| |||||| ||||||| |
|
|
| T |
1549955 |
gccgtggtagcatttgcatgtttaaatctcaatcctcgctctcgaccaacaatgaaatgtgtgt |
1549892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 9 - 305
Target Start/End: Original strand, 1604970 - 1605266
Alignment:
| Q |
9 |
atactatggttgtgagcgaaaagggtgatgtatatagctttggagtagtggcacttgaaactttaataggaagacaccctggtgatatactgtcatcact |
108 |
Q |
| |
|
|||| |||| ||||| |||||| ||||||||||||| ||||| ||||||||||||||| ||||| | ||||| ||||||| |||||| |||||||||| |
|
|
| T |
1604970 |
atacaatggctgtgaatgaaaagtgtgatgtatatagttttggtgtagtggcacttgaagctttagttggaaggcaccctgaggatatattgtcatcact |
1605069 |
T |
|
| Q |
109 |
tcagttagcatcgactcaaggcatgaaattatgtgaagtattagaccagcgtctcccacttccaaataatg-tgaaggttttacttgacataattcgtgt |
207 |
Q |
| |
|
||| | | ||||| ||| | | ||| ||||| ||||||||||||||||||| |||||||||||||| | || | ||| ||| ||||||||||| ||| |
|
|
| T |
1605070 |
tcaatcaaattcgacacaaagtgtcaaactatgtcaagtattagaccagcgtcttccacttccaaataacgatgta-gttatacgtgacataattcatgt |
1605168 |
T |
|
| Q |
208 |
tgctgtagtcgcatttacatgcttaaatctcaaccctcgctctcgaccagaaatgaagtgtgtgttgaagagtttcgtcacagagcttacaccgttaa |
305 |
Q |
| |
|
||| || || |||||| ||||||||||| |||| ||||| ||||||||| |||||| |||||| | ||||| ||||| ||||| ||||| |||| |
|
|
| T |
1605169 |
tgccgtggttgcatttgcatgcttaaatatcaatcctcgttctcgaccaacaatgaaacgtgtgtcacaaagttttgtcacggagctcacaccattaa |
1605266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 9 - 234
Target Start/End: Original strand, 3853224 - 3853449
Alignment:
| Q |
9 |
atactatggttgtgagcgaaaagggtgatgtatatagctttggagtagtggcacttgaaactttaataggaagacaccctggtgatatactgtcatcact |
108 |
Q |
| |
|
||||||||||||| || |||||| ||||||||||||| ||||| ||| |||||||||||| |||| | |||||||| |||| || ||| |||||||||| |
|
|
| T |
3853224 |
atactatggttgtaagtgaaaagtgtgatgtatatagttttggggtaatggcacttgaaattttattgggaagacatcctgaggaaatattgtcatcact |
3853323 |
T |
|
| Q |
109 |
tcagttagcatcgactcaaggcatgaaattatgtgaagtattagaccagcgtctcccacttccaaataatgtgaaggttttacttgacataattcgtgtt |
208 |
Q |
| |
|
||| ||| |||| ||||||| ||| ||| || |||||||| ||||| | ||||||| || ||||||||||| || ||||| |||| |||| |||| ||| |
|
|
| T |
3853324 |
tcaattaacatcaactcaagacatcaaactacgtgaagtactagacaaacgtctccaacgtccaaataatgagatggtttcacttcacattattcaggtt |
3853423 |
T |
|
| Q |
209 |
gctgtagtcgcatttacatgcttaaa |
234 |
Q |
| |
|
||||| || |||||| |||| ||||| |
|
|
| T |
3853424 |
gctgtcgtagcatttgcatgtttaaa |
3853449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 9 - 303
Target Start/End: Complemental strand, 1540930 - 1540636
Alignment:
| Q |
9 |
atactatggttgtgagcgaaaagggtgatgtatatagctttggagtagtggcacttgaaactttaataggaagacaccctggtgatatactgtcatcact |
108 |
Q |
| |
|
||||||||| ||||| |||||| ||||||||||||| ||||| |||||| |||||||||||||| | ||||| |||||||| ||| || |||||||||| |
|
|
| T |
1540930 |
atactatggctgtgaatgaaaagtgtgatgtatatagttttggtgtagtgacacttgaaactttagttggaaggcaccctggggatttattgtcatcact |
1540831 |
T |
|
| Q |
109 |
tcagttagcatcgactcaaggcatgaaattatgtgaagtattagaccagcgtctcccacttccaaataatgtgaaggttttacttgacataattcgtgtt |
208 |
Q |
| |
|
||| | | ||||||| | | | ||| || || ||||||||||||| ||||| |||||||||||||||| | ||| ||| ||||||||||| |||| |
|
|
| T |
1540830 |
tcaatcaacatcgacaagaagtgtcaaactacgtcaagtattagaccaacgtcttccacttccaaataatgacatagttatacgtgacataattcatgtt |
1540731 |
T |
|
| Q |
209 |
gctgtagtcgcatttacatgcttaaatctcaaccctcgctctcgaccagaaatgaagtgtgtgttgaagagtttcgtcacagagcttacaccgtt |
303 |
Q |
| |
|
| | || |||||| ||||||||||| ||| ||||| ||||||||| |||||| |||||| | ||||| ||||| |||||||||||||| |
|
|
| T |
1540730 |
tccctggtagcatttgcatgcttaaatggcaatcctcgttctcgaccaacaatgaaacgtgtgtcacaaagttttgtcaccgagcttacaccgtt |
1540636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 9 - 256
Target Start/End: Original strand, 1106583 - 1106830
Alignment:
| Q |
9 |
atactatggttgtgagcgaaaagggtgatgtatatagctttggagtagtggcacttgaaactttaataggaagacaccctggtgatatactgtcatcact |
108 |
Q |
| |
|
|||| |||| ||||| |||||| ||||||||||||| ||||| ||||||||||||||| ||||| | ||||| ||||||| |||||| |||||||||| |
|
|
| T |
1106583 |
atacaatggctgtgaatgaaaagtgtgatgtatatagttttggtgtagtggcacttgaagctttagttggaaggcaccctgaggatatattgtcatcact |
1106682 |
T |
|
| Q |
109 |
tcagttagcatcgactcaaggcatgaaattatgtgaagtattagaccagcgtctcccacttccaaataatgtgaaggttttacttgacataattcgtgtt |
208 |
Q |
| |
|
||| | | ||| | ||| | | ||| ||||| ||||||||||||||||||| |||||||||||||| | ||| ||| ||||||||||| |||| |
|
|
| T |
1106683 |
tcaatcaaattcgccacaaagtgtcaaactatgtcaagtattagaccagcgtcttccacttccaaataacgacgtagttatacgtgacataattcatgtt |
1106782 |
T |
|
| Q |
209 |
gctgtagtcgcatttacatgcttaaatctcaaccctcgctctcgacca |
256 |
Q |
| |
|
|| || || |||||| ||||||||||| |||| ||||| ||||||||| |
|
|
| T |
1106783 |
gccgtggttgcatttgcatgcttaaatatcaatcctcgttctcgacca |
1106830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #13
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 40 - 270
Target Start/End: Complemental strand, 1564200 - 1563970
Alignment:
| Q |
40 |
atatagctttggagtagtggcacttgaaactttaataggaagacaccctggtgatatactgtcatcacttcagttagcatcgactcaaggcatgaaatta |
139 |
Q |
| |
|
|||||| ||||| |||||| |||||||||||||| | ||||| | ||||| |||||| ||||||||||||| | | ||||||| ||| | || |||||| |
|
|
| T |
1564200 |
atatagttttggtgtagtgacacttgaaactttagttggaaggaaacctggagatatattgtcatcacttcaatcaacatcgacacaaagtatcaaatta |
1564101 |
T |
|
| Q |
140 |
tgtgaagtattagaccagcgtctcccacttccaaataatgtgaaggttttacttgacataattcgtgttgctgtagtcgcatttacatgcttaaatctca |
239 |
Q |
| |
|
||| ||||||||||||| ||||| | |||||||||||| | | ||| ||| ||||||||||| |||||| || || |||||| || | |||||||||| |
|
|
| T |
1564100 |
tgtcaagtattagaccaacgtcttcgacttccaaataacgaaatagttatacgtgacataattcatgttgccgtggtagcatttgcaagtttaaatctca |
1564001 |
T |
|
| Q |
240 |
accctcgctctcgaccagaaatgaagtgtgt |
270 |
Q |
| |
|
| ||||| ||||||||| |||||| ||||| |
|
|
| T |
1564000 |
atcctcgttctcgaccaacaatgaaatgtgt |
1563970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #14
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 92 - 256
Target Start/End: Original strand, 2335141 - 2335308
Alignment:
| Q |
92 |
gatatactgtcatcacttcagttagcatcgactcaaggcatgaaatta---tgtgaagtattagaccagcgtctcccacttccaaataatgtgaaggttt |
188 |
Q |
| |
|
|||||| ||||||||||||| || ||||| |||| |||||||||||| |||||||||||||| || | || || | ||||||||||||||| ||||| |
|
|
| T |
2335141 |
gatatattgtcatcacttcaatttgcatcaactctcggcatgaaattattatgtgaagtattagaacaacatcccctatttccaaataatgtgatggttt |
2335240 |
T |
|
| Q |
189 |
tacttgacataattcgtgttgctgtagtcgcatttacatgcttaaatctcaaccctcgctctcgacca |
256 |
Q |
| |
|
||||||||||||||||||||| | || |||||| |||||||||||||||| ||| ||||| ||||| |
|
|
| T |
2335241 |
tacttgacataattcgtgttgtcattgtagcatttgcatgcttaaatctcaatccttgctcttgacca |
2335308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #15
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 132 - 272
Target Start/End: Original strand, 2326313 - 2326455
Alignment:
| Q |
132 |
tgaaattatgtgaagtattagaccagcgtctcccacttccaaataatgtgaaggttttacttgac--ataattcgtgttgctgtagtcgcatttacatgc |
229 |
Q |
| |
|
|||| |||||||||||||||||||| ||||||||||||| |||||| ||| ||||||||||||| |||||||||||||| |||| |||||| ||| | |
|
|
| T |
2326313 |
tgaagttatgtgaagtattagaccaacgtctcccacttctgaataatatgatggttttacttgacatataattcgtgttgccttagtagcatttgcatac |
2326412 |
T |
|
| Q |
230 |
ttaaatctcaaccctcgctctcgaccagaaatgaagtgtgtgt |
272 |
Q |
| |
|
||||||||||| ||| |||||||||| |||||| ||||||| |
|
|
| T |
2326413 |
ttaaatctcaatcctttctctcgaccaacaatgaaatgtgtgt |
2326455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0491 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: scaffold0491
Description:
Target: scaffold0491; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 9 - 295
Target Start/End: Complemental strand, 5582 - 5296
Alignment:
| Q |
9 |
atactatggttgtgagcgaaaagggtgatgtatatagctttggagtagtggcacttgaaactttaataggaagacaccctggtgatatactgtcatcact |
108 |
Q |
| |
|
||||||||| ||||| |||||| ||||||||||||| ||||| ||||||||||||||||||||| ||||| |||||||| ||| || |||||||||| |
|
|
| T |
5582 |
atactatggctgtgaatgaaaagtgtgatgtatatagttttggtgtagtggcacttgaaactttagctggaaggcaccctggggatttattgtcatcact |
5483 |
T |
|
| Q |
109 |
tcagttagcatcgactcaaggcatgaaattatgtgaagtattagaccagcgtctcccacttccaaataatgtgaaggttttacttgacataattcgtgtt |
208 |
Q |
| |
|
||| | | ||||||| ||| | | ||| ||||| ||||||||||||||||||| |||||||||||||||| | |||| ||| | ||||||||| | || |
|
|
| T |
5482 |
tcaatcaacatcgacacaaagtgtcaaactatgtcaagtattagaccagcgtcttccacttccaaataatgaaatggttatacgtaacataattcatttt |
5383 |
T |
|
| Q |
209 |
gctgtagtcgcatttacatgcttaaatctcaaccctcgctctcgaccagaaatgaagtgtgtgttgaagagtttcgtcacagagctt |
295 |
Q |
| |
|
|| || || || ||| ||||||||||| |||| ||||| ||||||||| |||||| ||||||| | | ||||| ||||| |||||| |
|
|
| T |
5382 |
gccgttgttgcctttgcatgcttaaatgtcaatcctcgttctcgaccaacaatgaaatgtgtgtcgcaaagttttgtcaccgagctt |
5296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 95; Significance: 2e-46; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 9 - 295
Target Start/End: Complemental strand, 18738810 - 18738524
Alignment:
| Q |
9 |
atactatggttgtgagcgaaaagggtgatgtatatagctttggagtagtggcacttgaaactttaataggaagacaccctggtgatatactgtcatcact |
108 |
Q |
| |
|
||||||||| ||| | |||||| ||||||||||||| ||||| ||||||||||||||||||||| | ||||| |||||||| ||| || |||||||||| |
|
|
| T |
18738810 |
atactatggctgttaatgaaaagtgtgatgtatatagttttggtgtagtggcacttgaaactttagttggaaggcaccctggggatttattgtcatcact |
18738711 |
T |
|
| Q |
109 |
tcagttagcatcgactcaaggcatgaaattatgtgaagtattagaccagcgtctcccacttccaaataatgtgaaggttttacttgacataattcgtgtt |
208 |
Q |
| |
|
||| | | ||||||| ||| | | ||| ||||| ||||||||||||| ||||| |||||||||||||||| | ||| ||| ||||||||||| || | |
|
|
| T |
18738710 |
tcaatcaacatcgacacaaagtctcaaactatgtcaagtattagaccaccgtcttccacttccaaataatgacatagttatacgtgacataattcatgct |
18738611 |
T |
|
| Q |
209 |
gctgtagtcgcatttacatgcttaaatctcaaccctcgctctcgaccagaaatgaagtgtgtgttgaagagtttcgtcacagagctt |
295 |
Q |
| |
|
|| || || |||||| ||||||||||| |||| ||||| ||||||||| |||||| ||||||| | | ||||| ||||| |||||| |
|
|
| T |
18738610 |
gccgtggtagcatttgcatgcttaaatgtcaatcctcgttctcgaccaacaatgaaatgtgtgtcgcaaagttttgtcaccgagctt |
18738524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 9 - 295
Target Start/End: Complemental strand, 18743774 - 18743488
Alignment:
| Q |
9 |
atactatggttgtgagcgaaaagggtgatgtatatagctttggagtagtggcacttgaaactttaataggaagacaccctggtgatatactgtcatcact |
108 |
Q |
| |
|
||||||||| ||| | |||||| ||||||||||||| ||||| ||||||||||||||||||||| | ||||| |||||||| ||| || |||||||||| |
|
|
| T |
18743774 |
atactatggctgttaatgaaaagtgtgatgtatatagttttggtgtagtggcacttgaaactttagttggaaggcaccctggggatttattgtcatcact |
18743675 |
T |
|
| Q |
109 |
tcagttagcatcgactcaaggcatgaaattatgtgaagtattagaccagcgtctcccacttccaaataatgtgaaggttttacttgacataattcgtgtt |
208 |
Q |
| |
|
||| | | ||||||| ||| | | ||| ||||| ||||||||||||| ||||| |||||||||||||||| | ||| ||| ||||||||||| || | |
|
|
| T |
18743674 |
tcaatcaacatcgacacaaagtctcaaactatgtcaagtattagaccaccgtcttccacttccaaataatgacatagttatacgtgacataattcatgct |
18743575 |
T |
|
| Q |
209 |
gctgtagtcgcatttacatgcttaaatctcaaccctcgctctcgaccagaaatgaagtgtgtgttgaagagtttcgtcacagagctt |
295 |
Q |
| |
|
|| || || |||||| ||||||||||| |||| ||||| ||||||||| |||||| ||||||| | | ||||| ||||| |||||| |
|
|
| T |
18743574 |
gccgtggtagcatttgcatgcttaaatgtcaatcctcgttctcgaccaacaatgaaatgtgtgtcgcaaagttttgtcaccgagctt |
18743488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 9 - 295
Target Start/End: Complemental strand, 18748741 - 18748455
Alignment:
| Q |
9 |
atactatggttgtgagcgaaaagggtgatgtatatagctttggagtagtggcacttgaaactttaataggaagacaccctggtgatatactgtcatcact |
108 |
Q |
| |
|
||||||||| ||||| |||||| ||||||||||||| ||||| ||||||||||||||||||||| ||||| |||||||| ||| || |||||||||| |
|
|
| T |
18748741 |
atactatggctgtgaatgaaaagtgtgatgtatatagttttggtgtagtggcacttgaaactttagctggaaggcaccctggggatttattgtcatcact |
18748642 |
T |
|
| Q |
109 |
tcagttagcatcgactcaaggcatgaaattatgtgaagtattagaccagcgtctcccacttccaaataatgtgaaggttttacttgacataattcgtgtt |
208 |
Q |
| |
|
||| | | ||||||| ||| | | ||| ||||| ||||||||||||||||||| |||||||||||||||| | |||| ||| | ||||||||| | || |
|
|
| T |
18748641 |
tcaatcaacatcgacacaaagtgtcaaactatgtcaagtattagaccagcgtcttccacttccaaataatgaaatggttatacgtaacataattcatttt |
18748542 |
T |
|
| Q |
209 |
gctgtagtcgcatttacatgcttaaatctcaaccctcgctctcgaccagaaatgaagtgtgtgttgaagagtttcgtcacagagctt |
295 |
Q |
| |
|
|| || || || ||| ||||||||||| |||| ||||| ||||||||| |||||| ||||||| | | ||||| ||||| |||||| |
|
|
| T |
18748541 |
gccgttgttgcctttgcatgcttaaatgtcaatcctcgttctcgaccaacaatgaaatgtgtgtcgcaaagttttgtcaccgagctt |
18748455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 9 - 272
Target Start/End: Complemental strand, 18723089 - 18722826
Alignment:
| Q |
9 |
atactatggttgtgagcgaaaagggtgatgtatatagctttggagtagtggcacttgaaactttaataggaagacaccctggtgatatactgtcatcact |
108 |
Q |
| |
|
||||||||| ||||| |||||| ||||||||||||| ||||| ||||||||||||||||||||| ||||| |||||||| ||| || |||||||||| |
|
|
| T |
18723089 |
atactatggctgtgaatgaaaagtgtgatgtatatagttttggtgtagtggcacttgaaactttagctggaaggcaccctggggatttattgtcatcact |
18722990 |
T |
|
| Q |
109 |
tcagttagcatcgactcaaggcatgaaattatgtgaagtattagaccagcgtctcccacttccaaataatgtgaaggttttacttgacataattcgtgtt |
208 |
Q |
| |
|
||| | | |||| || ||| | | ||| ||| | ||||||||||||||||||| |||||||||||||||| | |||| ||| | ||||||||| | || |
|
|
| T |
18722989 |
tcaatcaacatcaacacaaagtgtcaaactatatcaagtattagaccagcgtcttccacttccaaataatgaaatggttatacgtaacataattcatttt |
18722890 |
T |
|
| Q |
209 |
gctgtagtcgcatttacatgcttaaatctcaaccctcgctctcgaccagaaatgaagtgtgtgt |
272 |
Q |
| |
|
|| || || || ||| ||||||||||| |||| ||||| ||||||||| |||||| ||||||| |
|
|
| T |
18722889 |
gccgttgttgcctttgcatgcttaaatgtcaatcctcgttctcgaccaacaatgaaatgtgtgt |
18722826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University