View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8912A_low_122 (Length: 302)
Name: NF8912A_low_122
Description: NF8912A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8912A_low_122 |
 | |
|
| [»] scaffold0096 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 151; Significance: 6e-80; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 116 - 282
Target Start/End: Original strand, 32650608 - 32650774
Alignment:
| Q |
116 |
ggaatccaaaggaaaaagtaccagaacgtgaacaatcataatgattaactgaaatcatttcatgaggggtttgtttatatttgtgtaaatatcagaacaa |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32650608 |
ggaatccaaaggaaaaagtaccagaacgtgaacaatcataatgattaactgaaatcatttcatgaggggtttgtttatatttgtgtaaatatcagaacaa |
32650707 |
T |
|
| Q |
216 |
ttctgatccatttatcacggcgataatgcaaattaatgaaaggaaagagtaaacgaattgagatgct |
282 |
Q |
| |
|
|||||||||||| |||||||| |||||| |||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
32650708 |
ttctgatccattcatcacggccataatgaaaataaatgaaaggaaagagtaaacgaattgagatgct |
32650774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 15 - 120
Target Start/End: Original strand, 12537299 - 12537407
Alignment:
| Q |
15 |
gacatcataccaaaaatcctgagttgacatcagattttggcaaggacttctcaaatgtgtggtaaaacttccttggaagaaagta---aacatcaggggc |
111 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
12537299 |
gacatcataccaaaaaacctgagttgacatcagattttggcaactacttctcaaatgtgtggtaaaacttccttggaagaaagtaaacaacatcaggggc |
12537398 |
T |
|
| Q |
112 |
gttaggaat |
120 |
Q |
| |
|
||||||||| |
|
|
| T |
12537399 |
gttaggaat |
12537407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0096 (Bit Score: 79; Significance: 6e-37; HSPs: 1)
Name: scaffold0096
Description:
Target: scaffold0096; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 15 - 120
Target Start/End: Complemental strand, 29283 - 29175
Alignment:
| Q |
15 |
gacatcataccaaaaatcctgagttgacatcagattttggcaaggacttctcaaatgtgtggtaaaacttccttggaagaaagta---aacatcaggggc |
111 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| ||||||| |||| |
|
|
| T |
29283 |
gacatcataccaaaaaacctgagttgacatcagattttggcaacgacttctcaaatgagtggtaaaacttccttggaagaaagtaaacaacatcaagggc |
29184 |
T |
|
| Q |
112 |
gttaggaat |
120 |
Q |
| |
|
||||||||| |
|
|
| T |
29183 |
gttaggaat |
29175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University