View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8912A_low_123 (Length: 302)

Name: NF8912A_low_123
Description: NF8912A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8912A_low_123
NF8912A_low_123
[»] chr8 (2 HSPs)
chr8 (1-293)||(4146077-4146369)
chr8 (257-289)||(8018274-8018306)
[»] chr3 (1 HSPs)
chr3 (205-293)||(41430386-41430474)
[»] chr6 (1 HSPs)
chr6 (210-293)||(12734679-12734762)
[»] chr7 (1 HSPs)
chr7 (220-293)||(30269633-30269706)
[»] chr1 (2 HSPs)
chr1 (222-291)||(31525096-31525165)
chr1 (220-293)||(44269664-44269737)
[»] chr5 (2 HSPs)
chr5 (210-293)||(11106952-11107035)
chr5 (206-285)||(42367588-42367667)


Alignment Details
Target: chr8 (Bit Score: 272; Significance: 1e-152; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 293
Target Start/End: Original strand, 4146077 - 4146369
Alignment:
Q  1 tgtacaaataaaaacaaaagaacttagaagtcaactcgagtattgcttgcattcacgcttctttaatgtcaaaatttacattttcaatccttaagccctt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4146077 tgtacaaataaaaacaaaagaacttagaagtcaactcgagtattgcttgcattcacgcttctttaatgtcaaaatttacattttcaatccttaagccctt 4146176  T
Q  101 tagtctctttatgtgtatatataaatagttgttggagcaaaggaaatgttacgatatatcacactttccgagaagtgaatcgatgtatagannnnnnngt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||    
T  4146177 tagtctctttatgtgtatatataaatagttgttggagcaaaggaaatgttacgatatatcacactttccgagaagtgaatcgatgtatagatttttttgt 4146276  T
Q  201 taagtttgatgcctcgtcgaactttgagtttctttgtcacgtgtctacttcgacgaatcttttgaattttcttcggagtcatgcagctggaac 293  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4146277 taagtttgatgcctcgtcgaactttgagtttctttgtcacgtgtctacttcgacgaatcttttgaattttcttcggagtcatgcagctggaac 4146369  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 257 - 289
Target Start/End: Complemental strand, 8018306 - 8018274
Alignment:
Q  257 atcttttgaattttcttcggagtcatgcagctg 289  Q
    ||||||||||||||||||||||| |||||||||    
T  8018306 atcttttgaattttcttcggagtgatgcagctg 8018274  T

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Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 205 - 293
Target Start/End: Complemental strand, 41430474 - 41430386
Alignment:
Q  205 tttgatgcctcgtcgaactttgagtttctttgtcacgtgtctacttcgacgaatcttttgaattttcttcggagtcatgcagctggaac 293  Q
    |||| |||||| || |||||||||||||||||||||| |||| ||| | || ||||||||||||||||||||||| |||||||||||||    
T  41430474 tttgctgcctcatcaaactttgagtttctttgtcacgagtctcctttggcggatcttttgaattttcttcggagtgatgcagctggaac 41430386  T

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Target: chr6 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 210 - 293
Target Start/End: Original strand, 12734679 - 12734762
Alignment:
Q  210 tgcctcgtcgaactttgagtttctttgtcacgtgtctacttcgacgaatcttttgaattttcttcggagtcatgcagctggaac 293  Q
    |||||| || |||||||||||||||| ||||| |||| || | ||| ||||||||||| ||||||||||| |||||||||||||    
T  12734679 tgcctcatcaaactttgagtttctttatcacgagtctcctccaacggatcttttgaatcttcttcggagtgatgcagctggaac 12734762  T

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Target: chr7 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 220 - 293
Target Start/End: Complemental strand, 30269706 - 30269633
Alignment:
Q  220 aactttgagtttctttgtcacgtgtctacttcgacgaatcttttgaattttcttcggagtcatgcagctggaac 293  Q
    |||||||||||||||||||||| |||| || | || |||||||| || |||||||||||| |||||||||||||    
T  30269706 aactttgagtttctttgtcacgagtctcctccaacaaatcttttcaactttcttcggagtgatgcagctggaac 30269633  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 222 - 291
Target Start/End: Original strand, 31525096 - 31525165
Alignment:
Q  222 ctttgagtttctttgtcacgtgtctacttcgacgaatcttttgaattttcttcggagtcatgcagctgga 291  Q
    |||||||||||||||||||| |||| || | ||| ||||||||||| ||||||| ||| |||||||||||    
T  31525096 ctttgagtttctttgtcacgagtctcctccaacggatcttttgaatcttcttcgcagtgatgcagctgga 31525165  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 220 - 293
Target Start/End: Complemental strand, 44269737 - 44269664
Alignment:
Q  220 aactttgagtttctttgtcacgtgtctacttcgacgaatcttttgaattttcttcggagtcatgcagctggaac 293  Q
    |||||||||||||||||||||| |||| || |   | ||||||||||| ||||||| ||| |||||||||||||    
T  44269737 aactttgagtttctttgtcacgagtctcctccagtggatcttttgaatcttcttcgaagtgatgcagctggaac 44269664  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 210 - 293
Target Start/End: Original strand, 11106952 - 11107035
Alignment:
Q  210 tgcctcgtcgaactttgagtttctttgtcacgtgtctacttcgacgaatcttttgaattttcttcggagtcatgcagctggaac 293  Q
    |||||| || |||| ||||||||||||| ||| |||| || | ||| ||||||||||| ||||||||||| ||| || ||||||    
T  11106952 tgcctcatcaaactctgagtttctttgttacgagtctcctccaacggatcttttgaatcttcttcggagtgatgtagttggaac 11107035  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 206 - 285
Target Start/End: Complemental strand, 42367667 - 42367588
Alignment:
Q  206 ttgatgcctcgtcgaactttgagtttctttgtcacgtgtctacttcgacgaatcttttgaattttcttcggagtcatgca 285  Q
    |||||| ||| || |||||| ||||||||||||| | |||| |||||||| ||||||| | ||||||| ||||| |||||    
T  42367667 ttgatgactcatcaaactttaagtttctttgtcaagagtcttcttcgacggatcttttaagttttctttggagtgatgca 42367588  T

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