View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8912A_low_124 (Length: 301)
Name: NF8912A_low_124
Description: NF8912A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8912A_low_124 |
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Alignment Details
Target: chr7 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 5 - 292
Target Start/End: Complemental strand, 34338415 - 34338128
Alignment:
| Q |
5 |
gaacaagtagcattgggaccttctttggttgggcaatggcagttatatatttgggtggaagaatgcctcaaatatttttgaatgtaagttatatacatac |
104 |
Q |
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| T |
34338415 |
gaacaagtagcattgggaccttctttggttgggcaatggcagttatatatttgggtggaagaatgcctcaaatatttttgaatgtaagttatatacatac |
34338316 |
T |
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| Q |
105 |
attccgatagcttagtatggactacagataaaatttatgttacatgatattattgttgaactggtaatggactgtagtcattcatcacaccgtttatagc |
204 |
Q |
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| T |
34338315 |
attccgatagcttagtatggactacagataaaatttatgttacatgatattattgttgaactggtaatggactgtagtcattcatcacaccttttatagc |
34338216 |
T |
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| Q |
205 |
ctgttattcgttaaactaggaaatgtgtgctatatatttgaaaaactccatgtcatctaataagcagtttatattgatgtccatctca |
292 |
Q |
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| T |
34338215 |
ctgttattcgttaaactaggaaatgtgtgctatatatttgaaaaactccatgtcatctaataagcagtttatattgatgtctatctca |
34338128 |
T |
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Target: chr6 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 12 - 98
Target Start/End: Complemental strand, 9072940 - 9072854
Alignment:
| Q |
12 |
tagcattgggaccttctttggttgggcaatggcagttatatatttgggtggaagaatgcctcaaatatttttgaatgtaagttatat |
98 |
Q |
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||||||||| || | | |||||||||||||||||||||||||| ||||||||||| | |||||||| | |||||||||||||||||| |
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| T |
9072940 |
tagcattggaacttaccttggttgggcaatggcagttatatatatgggtggaagacttcctcaaatttgtttgaatgtaagttatat |
9072854 |
T |
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