View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8912A_low_132 (Length: 298)
Name: NF8912A_low_132
Description: NF8912A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8912A_low_132 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 4 - 298
Target Start/End: Complemental strand, 12603944 - 12603654
Alignment:
| Q |
4 |
gagtttggtgttgagggagatcaacacgaagaagagtttgcgaaacaaaaaacaacatggtgattcaactgcttagccaataaaagcccccggtgagtac |
103 |
Q |
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| T |
12603944 |
gagtttggtcttgagggagatcaacacgaagaagagtttgcgaaacaaaaaacaacatggtgattcaactgcttagccaataaaagcccccggtgagtag |
12603845 |
T |
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| Q |
104 |
catgaagctcaacatgaagaatctcagaggatcttgggatgaaccccgagaaccctgagagccgagacacacaagcaagggtgacgaagtaaaccaccaa |
203 |
Q |
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| T |
12603844 |
catgaagctcaacataaagaatctcagaggatcttgggatgaaccccgagaaccctgagagccgagacaca----caagggtgacgaagtaaaccaccaa |
12603749 |
T |
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| Q |
204 |
acccagctcttatagggttgttaaggcaaccttcatcaacgtttagaatggtgcaattttgattgaacgagttccattttacacatctatcatga |
298 |
Q |
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| T |
12603748 |
acccagctcttatagggttgttaaggcaaccttcatcaacgtttagaatggtgcaattttgattgaacgagttccattttacacatctatcatga |
12603654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 5 - 268
Target Start/End: Complemental strand, 12595023 - 12594762
Alignment:
| Q |
5 |
agtttggtgttgagggagatcaacacgaagaagag--tttgcgaaacaaaaaacaacatggtgattcaactgcttagccaataaaagcccccggtgagta |
102 |
Q |
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| T |
12595023 |
agtttggccttgagagagatcaacacaaagaagagagtttgtgaaacaaaaaacaacatggtgattcaacttcttagccaataaaagcccctaatgaatt |
12594924 |
T |
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| Q |
103 |
ccatgaagctcaacatgaagaatctcagaggatcttgggatgaaccccgagaaccctgagagccgagacacacaagcaagggtgacgaagtaaaccacca |
202 |
Q |
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| T |
12594923 |
gcatgaagctcgtcatgaaaaatctcagaggatcttgggataaccctcgagaagcccgagagccaagacata----gaagggtgacagagcaaaccacca |
12594828 |
T |
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| Q |
203 |
aacccagctcttatagggttgttaaggcaaccttcatcaacgtttagaatggtgcaattttgattg |
268 |
Q |
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| T |
12594827 |
aacctagctcttatagaattgttaaggaaaccgccatcaacgtttagaatggtgcaattttgattg |
12594762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 50 - 155
Target Start/End: Original strand, 1990652 - 1990757
Alignment:
| Q |
50 |
aaaaaacaacatggtgattcaactgcttagccaataaaagcccccggtgagtaccatgaagctcaacatgaagaatctcagaggatcttgggatgaaccc |
149 |
Q |
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| T |
1990652 |
aaaaaacaccatggtgattcaactacatagctaatgaaagcctctagtgaattacatgaagttcaacattaagaatctcatagaattttgggatgaacct |
1990751 |
T |
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| Q |
150 |
cgagaa |
155 |
Q |
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| T |
1990752 |
cgagaa |
1990757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 60 - 92
Target Start/End: Original strand, 6220130 - 6220162
Alignment:
| Q |
60 |
atggtgattcaactgcttagccaataaaagccc |
92 |
Q |
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| T |
6220130 |
atggtgattcaattgcttagccaataaaagccc |
6220162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 220
Target Start/End: Original strand, 992522 - 992562
Alignment:
| Q |
180 |
aagggtgacgaagtaaaccaccaaacccagctcttataggg |
220 |
Q |
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| T |
992522 |
aagggtgacgaagtaagccaccaaacccaactctaataggg |
992562 |
T |
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