View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8912A_low_133 (Length: 297)
Name: NF8912A_low_133
Description: NF8912A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8912A_low_133 |
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Alignment Details
Target: chr6 (Bit Score: 139; Significance: 9e-73; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 7 - 285
Target Start/End: Original strand, 34314390 - 34314667
Alignment:
| Q |
7 |
caaaagaggagtattatatcaagtgaacaatttgtttgtgagagttcacgatggttgatattgtaaatatgtttgagaatcagttaatttgtgatcattc |
106 |
Q |
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| T |
34314390 |
caaaagaggagtgttatatcaagcgaacaatttgtttgtgagagttcacgatggttgatattataaatatgtttcggaatcagctaatttgtgatcattc |
34314489 |
T |
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| Q |
107 |
tgtctgaatctctattgtaacttttctgctattttctcttacatactttatgttaaggaaatagtctctttgtttttaatatattccgttttgatttctn |
206 |
Q |
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||| ||||||||||| |||||||||| |||| |||||||||||| |||||| ||||| ||||| ||||| ||| |||||||||| | |||||||||| |
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| T |
34314490 |
tgtatgaatctctatcgtaacttttcgactatcttctcttacatattttatgctaagggaatagactcttagttcttaatatatttcattttgatttc-- |
34314587 |
T |
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| Q |
207 |
nnnnnnnnnnnntagaaattaata--atatatactactctcttgtatcgagttgtcattattattcaagactttgtatttt |
285 |
Q |
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||| |||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
34314588 |
-gtaaaaaaaaataggaattaataatatatatactactctcttgtatcaagttgtcattattattcaagactttgtatttt |
34314667 |
T |
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