View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8912A_low_137 (Length: 293)
Name: NF8912A_low_137
Description: NF8912A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8912A_low_137 |
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Alignment Details
Target: chr7 (Bit Score: 125; Significance: 2e-64; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 167 - 291
Target Start/End: Complemental strand, 5409043 - 5408919
Alignment:
| Q |
167 |
tttatactcatcaacaatttgcaagttcaacagcaatgatcatacacaaacaagctaaatcacgcaaaagcagaaaaacgcgaacacacataaattcatt |
266 |
Q |
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| T |
5409043 |
tttatactcatcaacaatttgcaagttcaacagcaatgatcatacacaaacaagctaaatcacgcaaaagcagaaaaacgcgaacacacataaattcatt |
5408944 |
T |
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| Q |
267 |
tccaaacactataagcaacaaaaat |
291 |
Q |
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| T |
5408943 |
tccaaacactataagcaacaaaaat |
5408919 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 17 - 142
Target Start/End: Complemental strand, 5409192 - 5409067
Alignment:
| Q |
17 |
ggacatctcgacacggacaaaaatttgaaaaatgaattcatttaagtaatcacgtgtgtcagtgtcagaacacaccggacacaccttccatcagaagttt |
116 |
Q |
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| T |
5409192 |
ggacacctcgacacggacaaaaatttgaaaaatgaattcatttaagtaatcacgtgtgtcagtgtcagaacacaccggacacaccttccatcagaagttt |
5409093 |
T |
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| Q |
117 |
cggtgctacagagtttccacacatcg |
142 |
Q |
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| T |
5409092 |
cggtgctacagagtttccacacatcg |
5409067 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 88 - 121
Target Start/End: Complemental strand, 31020670 - 31020637
Alignment:
| Q |
88 |
acaccggacacaccttccatcagaagtttcggtg |
121 |
Q |
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| T |
31020670 |
acaccggacacaccttccatcagaagtgtcggtg |
31020637 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 88 - 129
Target Start/End: Original strand, 4790778 - 4790819
Alignment:
| Q |
88 |
acaccggacacaccttccatcagaagtttcggtgctacagag |
129 |
Q |
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| T |
4790778 |
acaccgaacacaccttcaatcagaagtgtcggtgctacagag |
4790819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 90 - 126
Target Start/End: Original strand, 23253332 - 23253368
Alignment:
| Q |
90 |
accggacacaccttccatcagaagtttcggtgctaca |
126 |
Q |
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| T |
23253332 |
accgaacacaccttccatcagaagtgtcggtgctaca |
23253368 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 88 - 129
Target Start/End: Original strand, 894134 - 894175
Alignment:
| Q |
88 |
acaccggacacaccttccatcagaagtttcggtgctacagag |
129 |
Q |
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| T |
894134 |
acaccggacacaccttccatcaaaattgtcggtgctacagag |
894175 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 35 - 108
Target Start/End: Original strand, 13810507 - 13810578
Alignment:
| Q |
35 |
aaaaatttgaaaaatgaattcatttaa-gtaatcacgtgtgtcagtgtcagaacacaccggacacaccttccatc |
108 |
Q |
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| T |
13810507 |
aaaaaattgaaaaatgaatttattgaacgtaatcacatgtgtcggtgtcaga---caccggacacgccttccatc |
13810578 |
T |
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