View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8912A_low_141 (Length: 290)

Name: NF8912A_low_141
Description: NF8912A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8912A_low_141
NF8912A_low_141
[»] chr3 (5 HSPs)
chr3 (15-272)||(11897148-11897405)
chr3 (15-273)||(26432588-26432846)
chr3 (116-273)||(23424497-23424654)
chr3 (158-273)||(53608336-53608451)
chr3 (119-273)||(38647179-38647333)
[»] chr8 (4 HSPs)
chr8 (15-272)||(23132475-23132732)
chr8 (116-219)||(26587277-26587380)
chr8 (20-178)||(14760016-14760174)
chr8 (182-273)||(38348466-38348557)
[»] chr2 (11 HSPs)
chr2 (15-272)||(14653570-14653827)
chr2 (119-268)||(26791322-26791471)
chr2 (122-273)||(40328174-40328325)
chr2 (122-273)||(35135219-35135370)
chr2 (107-216)||(16322502-16322611)
chr2 (119-216)||(573245-573342)
chr2 (122-273)||(3779048-3779199)
chr2 (119-264)||(177504-177649)
chr2 (119-170)||(35062956-35063007)
chr2 (134-216)||(19265469-19265551)
chr2 (114-200)||(42403209-42403295)
[»] chr1 (4 HSPs)
chr1 (15-272)||(20284849-20285106)
chr1 (107-274)||(50236550-50236717)
chr1 (119-274)||(50451893-50452048)
chr1 (158-216)||(23465403-23465461)
[»] chr4 (6 HSPs)
chr4 (122-273)||(54477407-54477558)
chr4 (116-226)||(14307826-14307936)
chr4 (116-226)||(14291777-14291887)
chr4 (119-216)||(3881771-3881868)
chr4 (116-268)||(46784469-46784621)
chr4 (182-273)||(33803974-33804065)
[»] scaffold0036 (1 HSPs)
scaffold0036 (119-209)||(75967-76057)
[»] chr5 (2 HSPs)
chr5 (119-225)||(32874457-32874563)
chr5 (119-273)||(7817131-7817285)
[»] chr6 (4 HSPs)
chr6 (116-273)||(24893833-24893990)
chr6 (116-200)||(24990660-24990744)
chr6 (110-216)||(13599639-13599745)
chr6 (159-216)||(35233542-35233599)
[»] chr7 (3 HSPs)
chr7 (113-216)||(16769956-16770059)
chr7 (122-255)||(1353794-1353927)
chr7 (119-264)||(1579159-1579304)


Alignment Details
Target: chr3 (Bit Score: 234; Significance: 1e-129; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 15 - 272
Target Start/End: Complemental strand, 11897405 - 11897148
Alignment:
Q  15 ggacatcatctgcaaataggagatgggataaatgcggccccgtaggggtgatttggatgggtgcccatcttccttgggcgactgctgagtttatagcagc 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| |||    
T  11897405 ggacatcatctgcaaataggagatgggataaatgcggccccgtaggggtgatttggatgggtgcccatcttccttggacgactgctgagttgatagtagc 11897306  T
Q  115 tgaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaaggcggcaacttgttcccattc 214  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||    
T  11897305 tgaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttc 11897206  T
Q  215 caaagtatagagtaactcggagaagctacgcaatgcatgatgagcttgatggtgatgt 272  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  11897205 caaagtatagagtaactaggagaagctacgcaatgcatgatgagcttgatggtgatgt 11897148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 15 - 273
Target Start/End: Original strand, 26432588 - 26432846
Alignment:
Q  15 ggacatcatctgcaaataggagatgggataaatgcggccccgtaggggtgatttggatgggtgcccatcttccttgggcgactgctgagtttatagcagc 114  Q
    ||||||||| |||||| ||||| ||||||||||||||||||||||| |||||||| || ||| ||||||||||||||| ||| || ||||| ||||||||    
T  26432588 ggacatcatttgcaaaaaggaggtgggataaatgcggccccgtaggagtgatttgaatcggttcccatcttccttgggtgacggcggagttgatagcagc 26432687  T
Q  115 tgaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaaggcggcaacttgttcccattc 214  Q
     || |||||||||||||||| |||||| |||||||||||||| ||||||||||||||||| ||||| ||||| ||||||| |||||||||||||||||||    
T  26432688 ggatagcttttccatgcaaatgatgaagagataaggggacaatggatcaccttgtcggagaccatgagaaggtttgaaagacggcaacttgttcccattc 26432787  T
Q  215 caaagtatagagtaactcggagaagctacgcaatgcatgatgagcttgatggtgatgtc 273  Q
    ||||||||||||||  | |  ||||  || |||||||||||||| ||||||||||||||    
T  26432788 caaagtatagagtagtttgatgaagagacacaatgcatgatgagtttgatggtgatgtc 26432846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 116 - 273
Target Start/End: Complemental strand, 23424654 - 23424497
Alignment:
Q  116 gaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaaggcggcaacttgttcccattcc 215  Q
    ||||||||||||||||| || |||||||||||||| || | ||| |||||||||| ||| ||||| |  ||||||||||| ||||  ||||| || ||||    
T  23424654 gaaagcttttccatgcatagtatgaaaagataaggagagagcgggtcaccttgtctgagaccatgtgtgggcttgaaagggggcattttgttacctttcc 23424555  T
Q  216 aaagtatagagtaactcggagaagct-acgcaatgcatgatgagcttgatggtgatgtc 273  Q
    | | ||| ||| ||   |||| || | || ||||| |||||||||||||||||||||||    
T  23424554 ataatattgag-aatgtggaggaggtgacacaatgtatgatgagcttgatggtgatgtc 23424497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 158 - 273
Target Start/End: Original strand, 53608336 - 53608451
Alignment:
Q  158 ggatcaccttgtcggaggccatgcgaaggcttgaaaggcggcaacttgttcccattccaaagtatagagtaactcggagaagctacgcaatgcatgatga 257  Q
    |||||||| |||| ||| ||||| |||||| ||||||  ||||  ||||| ||||||||||| |||||| |  | |  || |  || |||||||||||||    
T  53608336 ggatcaccctgtctgagaccatgtgaaggcctgaaagaaggcattttgtttccattccaaagaatagagaaggtagaggaggaaacacaatgcatgatga 53608435  T
Q  258 gcttgatggtgatgtc 273  Q
    ||||||||||||||||    
T  53608436 gcttgatggtgatgtc 53608451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 119 - 273
Target Start/End: Original strand, 38647179 - 38647333
Alignment:
Q  119 agcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaaggcggcaacttgttcccattccaaa 218  Q
    |||||||||||||| |  ||||| || || || || | |||||||||||||| ||| || || |||||||| ||||| ||||  || || || |||||||    
T  38647179 agcttttccatgcataaaatgaagaggtagggagagagcggatcaccttgtctgagaccgtgggaaggcttaaaagggggcattttattaccgttccaaa 38647278  T
Q  219 gtatagagtaactcggagaagctacgcaatgcatgatgagcttgatggtgatgtc 273  Q
    | |||||| |  | |  || |  || |||||||||||||||||||||||||||||    
T  38647279 gaatagagaaggtggatgatgaaacacaatgcatgatgagcttgatggtgatgtc 38647333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 230; Significance: 1e-127; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 15 - 272
Target Start/End: Original strand, 23132475 - 23132732
Alignment:
Q  15 ggacatcatctgcaaataggagatgggataaatgcggccccgtaggggtgatttggatgggtgcccatcttccttgggcgactgctgagtttatagcagc 114  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  23132475 ggacatcatctgcaaataggagatgggataaatggggccccgtaggggtgatttggatgggtgcccatcttccttgggcgactgctgagttgatagcagc 23132574  T
Q  115 tgaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaaggcggcaacttgttcccattc 214  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| |||    
T  23132575 tgaaagcttttccatgcaaaggatgaaaagataaggggacaacgtatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttc 23132674  T
Q  215 caaagtatagagtaactcggagaagctacgcaatgcatgatgagcttgatggtgatgt 272  Q
    ||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||    
T  23132675 caaagtatagagtaactaggagaagctacgcaatgcatgatgaacttgatggtgatgt 23132732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 116 - 219
Target Start/End: Complemental strand, 26587380 - 26587277
Alignment:
Q  116 gaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaaggcggcaacttgttcccattcc 215  Q
    ||||| || ||||| ||||| ||||| || || || ||||| || |||||||||||||||||||| | ||||||||| || ||||| ||||| ||||| |    
T  26587380 gaaagtttctccatacaaagaatgaagaggtagggagacaatgggtcaccttgtcggaggccatgagtaggcttgaaggggggcaatttgttaccatttc 26587281  T
Q  216 aaag 219  Q
    ||||    
T  26587280 aaag 26587277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 178
Target Start/End: Complemental strand, 14760174 - 14760016
Alignment:
Q  20 tcatctgcaaataggagatgggataaatgcggccccgtaggggtgatttggatgggtgcccatcttccttgggcgactgctgagtttatagcagctgaaa 119  Q
    |||||||||||||| || || ||||  || |||||||||   |||||||| |  ||| |||| ||||||||   ||| ||||| |||||||||   || |    
T  14760174 tcatctgcaaatagtaggtgagatatctggggccccgtatttgtgatttgaaccggttcccaacttccttgattgaccgctgaatttatagcaatagaga 14760075  T
Q  120 gcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggcca 178  Q
    |||||||||| ||||| ||||| || || |||||||||||||| ||||| || ||||||    
T  14760074 gcttttccatacaaagaatgaagaggtatggggacaacggatctccttggcgaaggcca 14760016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 182 - 273
Target Start/End: Complemental strand, 38348557 - 38348466
Alignment:
Q  182 gaaggcttgaaaggcggcaacttgttcccattccaaagtatagagtaactcggagaagctacgcaatgcatgatgagcttgatggtgatgtc 273  Q
    |||||||||||||| | |||  |||| ||||||||||| |||||| |  | || || |  || |||||||||||||||||||||||||||||    
T  38348557 gaaggcttgaaaggagacaatctgttgccattccaaaggatagagaaggtgggtgaggtaacacaatgcatgatgagcttgatggtgatgtc 38348466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 230; Significance: 1e-127; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 15 - 272
Target Start/End: Original strand, 14653570 - 14653827
Alignment:
Q  15 ggacatcatctgcaaataggagatgggataaatgcggccccgtaggggtgatttggatgggtgcccatcttccttgggcgactgctgagtttatagcagc 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  14653570 ggacatcatctgcaaataggagatgggataaatgcggccccgtaggagtgatttggatgggtgcccatcttccttgggcaactgctgagtttatagcagc 14653669  T
Q  115 tgaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaaggcggcaacttgttcccattc 214  Q
     || ||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||    
T  14653670 ggatagcttttccatgcaaaggatgaaaaaataaggggacaacggatcaccttgttggaggccatgagaaggcttgaaaggcggcaacttgttcccattc 14653769  T
Q  215 caaagtatagagtaactcggagaagctacgcaatgcatgatgagcttgatggtgatgt 272  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14653770 caaagtatagagtaactcggagaagctacgcaatgcatgatgagcttgatggtgatgt 14653827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 119 - 268
Target Start/End: Complemental strand, 26791471 - 26791322
Alignment:
Q  119 agcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaaggcggcaacttgttcccattccaaa 218  Q
    ||||| ||||||||||| || ||||| || ||||| | ||||||||| || | ||||||||| | ||||| |||||| |||||| | || ||||||||||    
T  26791471 agcttctccatgcaaagaataaaaaggtacggggaaagcggatcaccctgcctgaggccatgagtaggctcgaaaggaggcaacctatttccattccaaa 26791372  T
Q  219 gtatagagtaactcggagaagctacgcaatgcatgatgagcttgatggtg 268  Q
    | |||||| | || |  ||||  |||||||||||||||||||||||||||    
T  26791371 gaatagagaagctggatgaagtaacgcaatgcatgatgagcttgatggtg 26791322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 122 - 273
Target Start/End: Complemental strand, 40328325 - 40328174
Alignment:
Q  122 ttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaaggcggcaacttgttcccattccaaagta 221  Q
    |||||||| || ||||||||||||||||| |||||||| |||||||| || || ||||| | |||||||||||| |  | |||||| |||||||| |  |    
T  40328325 ttttccatacataggatgaaaagataaggagacaacgggtcaccttgacgaagtccatgagtaggcttgaaaggagaaagcttgtttccattccataaaa 40328226  T
Q  222 tagagtaactcggagaagctacgcaatgcatgatgagcttgatggtgatgtc 273  Q
    | ||||| ||||| || |  || |||||||||||||| |||||||| |||||    
T  40328225 ttgagtagctcggtgaggtaacacaatgcatgatgagtttgatggtaatgtc 40328174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 122 - 273
Target Start/End: Original strand, 35135219 - 35135370
Alignment:
Q  122 ttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaaggcggcaacttgttcccattccaaagta 221  Q
    |||||||| || ||||||||||||||||| |||||||| |||||||| || || ||||| | |||||||||||| |  | |||||| |||||||| |  |    
T  35135219 ttttccatacataggatgaaaagataaggagacaacgggtcaccttgacgaagtccatgagtaggcttgaaaggagagagcttgtttccattccataaaa 35135318  T
Q  222 tagagtaactcggagaagctacgcaatgcatgatgagcttgatggtgatgtc 273  Q
    | ||||| || || || |  || |||||||||||||| |||||||| |||||    
T  35135319 ttgagtagcttggtgaggtaacacaatgcatgatgagtttgatggtaatgtc 35135370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 107 - 216
Target Start/End: Complemental strand, 16322611 - 16322502
Alignment:
Q  107 atagcagctgaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaaggcggcaacttgt 206  Q
    |||||| | ||||| |||||||||||||| |||||||| || || || | ||| ||||||||||| |||||||| |  ||||||||||| |||| |||||    
T  16322611 atagcaacagaaagtttttccatgcaaagtatgaaaaggtacggagaaagcgggtcaccttgtcgaaggccatgagtgggcttgaaaggaggcatcttgt 16322512  T
Q  207 tcccattcca 216  Q
    | ||||||||    
T  16322511 ttccattcca 16322502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 119 - 216
Target Start/End: Complemental strand, 573342 - 573245
Alignment:
Q  119 agcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaaggcggcaacttgttcccattcca 216  Q
    ||||| ||||||||||||||||| || ||||| || | |||||||||||||| ||||||||| ||||| || |||||  |||  ||||| ||||||||    
T  573342 agcttctccatgcaaaggatgaataggtaaggagagagcggatcaccttgtctgaggccatgggaaggtttaaaaggatgcattttgttaccattcca 573245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 122 - 273
Target Start/End: Original strand, 3779048 - 3779199
Alignment:
Q  122 ttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaaggcggcaacttgttcccattccaaagta 221  Q
    |||||||| || ||||||||||||||||| |||| ||| |||||||| || || ||||| | |||||||||||| |  | |||||| |||||||| |  |    
T  3779048 ttttccatacagaggatgaaaagataaggagacagcgggtcaccttgacgaagtccatgagtaggcttgaaaggagagagcttgtttccattccataaca 3779147  T
Q  222 tagagtaactcggagaagctacgcaatgcatgatgagcttgatggtgatgtc 273  Q
      ||||| || || || |  || |||||||||||||| |||||||| |||||    
T  3779148 atgagtagcttggtgaggtaacacaatgcatgatgagtttgatggtaatgtc 3779199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 119 - 264
Target Start/End: Complemental strand, 177649 - 177504
Alignment:
Q  119 agcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaaggcggcaacttgttcccattccaaa 218  Q
    |||||||||||||| | |||||| || ||||| ||||| || ||||||||||  || ||||| | |||||||| ||| ||| | ||||| ||||||||||    
T  177649 agcttttccatgcagatgatgaataggtaaggagacaaagggtcaccttgtcttagaccatgagtaggcttgataggaggccatttgtttccattccaaa 177550  T
Q  219 gtatagagtaactcggagaagctacgcaatgcatgatgagcttgat 264  Q
    | | |||| |  | | |||||  || |||||||||||||| |||||    
T  177549 gaacagagaatgttgaagaagtgacacaatgcatgatgagtttgat 177504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 119 - 170
Target Start/End: Original strand, 35062956 - 35063007
Alignment:
Q  119 agcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtc 170  Q
    ||||||||||| ||||||||||||||||| ||||| |  |||||||||||||    
T  35062956 agcttttccatacaaaggatgaaaagatagggggatagtggatcaccttgtc 35063007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 134 - 216
Target Start/End: Complemental strand, 19265551 - 19265469
Alignment:
Q  134 aggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaaggcggcaacttgttcccattcca 216  Q
    ||||||||||||||||| |||| ||| |||||||| || || ||||| | |||||||||||| |  | |||||| ||||||||    
T  19265551 aggatgaaaagataaggagacagcgggtcaccttgacgaagtccatgagtaggcttgaaaggagagagcttgtttccattcca 19265469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 114 - 200
Target Start/End: Original strand, 42403209 - 42403295
Alignment:
Q  114 ctgaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaaggcggca 200  Q
    ||||||||||||||||||| || || || |||||||| || |  || |||||||| ||||||||||| |  ||||||||||| ||||    
T  42403209 ctgaaagcttttccatgcacagtataaatagataaggtgagagagggtcaccttgccggaggccatgagtgggcttgaaaggaggca 42403295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 222; Significance: 1e-122; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 15 - 272
Target Start/End: Complemental strand, 20285106 - 20284849
Alignment:
Q  15 ggacatcatctgcaaataggagatgggataaatgcggccccgtaggggtgatttggatgggtgcccatcttccttgggcgactgctgagtttatagcagc 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  20285106 ggacatcatctgcaaataggagatgggataaatgcggccccgtaggggtgatttggatgggtgcccatcttccttgggcgactgctgagttgatagcagc 20285007  T
Q  115 tgaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaaggcggcaacttgttcccattc 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| |||||||||||||   ||||| |||    
T  20285006 tgaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcgcaggccatgagaaggctcgaaaggcggcaaccctttcccgttc 20284907  T
Q  215 caaagtatagagtaactcggagaagctacgcaatgcatgatgagcttgatggtgatgt 272  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  20284906 caaagtatagagtaactaggagaagctacgcaatgcatgatgagcttgatggtgatgt 20284849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 107 - 274
Target Start/End: Original strand, 50236550 - 50236717
Alignment:
Q  107 atagcagctgaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaaggcggcaacttgt 206  Q
    |||||| |||| || || ||||| || | ||||||||| |||||||| | ||||||||||| || ||||||||| | |||||||||||| |||| |||||    
T  50236550 atagcaactgatagtttctccatacacaagatgaaaaggtaaggggaaagcggatcaccttatctgaggccatgagtaggcttgaaagggggcatcttgt 50236649  T
Q  207 tcccattccaaagtatagagtaactcggagaagctacgcaatgcatgatgagcttgatggtgatgtcc 274  Q
    |||| ||||| |  ||||||||  | || || |  || |||||||||||||| ||| |||||||||||    
T  50236650 tcccgttccataagatagagtaggtgggtgaggagacacaatgcatgatgagtttggtggtgatgtcc 50236717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 119 - 274
Target Start/End: Complemental strand, 50452048 - 50451893
Alignment:
Q  119 agcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaaggcggcaacttgttcccattccaaa 218  Q
    ||||| ||||| ||||| ||||| || ||||| || | |||||||||||||||||||||||| | ||| |||||| ||||||  ||||| |||||||| |    
T  50452048 agcttctccatacaaagaatgaagaggtaaggagaaagcggatcaccttgtcggaggccatgtgtaggtttgaaatgcggcattttgttaccattccata 50451949  T
Q  219 gtatagagtaactcggagaagct-acgcaatgcatgatgagcttgatggtgatgtcc 274  Q
      |||||| || | |||| || | || ||||||||||| || |||||||||||||||    
T  50451948 agatagagaaagt-ggaggaggtgacacaatgcatgataagtttgatggtgatgtcc 50451893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 158 - 216
Target Start/End: Complemental strand, 23465461 - 23465403
Alignment:
Q  158 ggatcaccttgtcggaggccatgcgaaggcttgaaaggcggcaacttgttcccattcca 216  Q
    |||||||||||||| || ||||| | |||||||||| ||||||| ||||| ||||||||    
T  23465461 ggatcaccttgtcgaagaccatgagtaggcttgaaatgcggcaatttgttaccattcca 23465403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 3e-23; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 122 - 273
Target Start/End: Original strand, 54477407 - 54477558
Alignment:
Q  122 ttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaaggcggcaacttgttcccattccaaagta 221  Q
    |||||||||||||| ||||| |||||||||||||| ||||||||||| || || ||||| | |||||||||||  || | |||||| ||||||||||| |    
T  54477407 ttttccatgcaaagaatgaagagataaggggacaaaggatcaccttggcgcagaccatgtgtaggcttgaaagatggaagcttgtttccattccaaagga 54477506  T
Q  222 tagagtaactcggagaagctacgcaatgcatgatgagcttgatggtgatgtc 273  Q
    || ||||  | |  || |  || |||||||||||||||||||||||||||||    
T  54477507 taaagtattttgatgatgaaacacaatgcatgatgagcttgatggtgatgtc 54477558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 116 - 226
Target Start/End: Complemental strand, 14307936 - 14307826
Alignment:
Q  116 gaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaaggcggcaacttgttcccattcc 215  Q
    ||||| |||||||| |||| ||||||||| ||||| ||    ||||| ||||||| ||||||||| |||||||| |||||  ||| ||||||||||||||    
T  14307936 gaaagtttttccatacaaatgatgaaaaggtaaggcgagggaggatctccttgtctgaggccatgggaaggcttaaaaggatgcatcttgttcccattcc 14307837  T
Q  216 aaagtatagag 226  Q
    |||| ||||||    
T  14307836 aaagaatagag 14307826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 116 - 226
Target Start/End: Complemental strand, 14291887 - 14291777
Alignment:
Q  116 gaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaaggcggcaacttgttcccattcc 215  Q
    ||||| |||||||| || | ||||||||| ||||| ||    ||||| ||||||| ||||||||| |||||||| |||||  ||| ||||||||||||||    
T  14291887 gaaagtttttccatacagatgatgaaaaggtaaggcgagggaggatctccttgtctgaggccatgggaaggcttaaaaggatgcatcttgttcccattcc 14291788  T
Q  216 aaagtatagag 226  Q
    |||| ||||||    
T  14291787 aaagaatagag 14291777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 119 - 216
Target Start/End: Complemental strand, 3881868 - 3881771
Alignment:
Q  119 agcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaaggcggcaacttgttcccattcca 216  Q
    ||||||||||| ||||| ||||| || ||| | || | |||||||||||||||||||||||| | ||| |||||| ||||||  ||||| ||||||||    
T  3881868 agcttttccatacaaagaatgaagaggtaaagagaaagcggatcaccttgtcggaggccatgtgtaggtttgaaatgcggcattttgttaccattcca 3881771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 116 - 268
Target Start/End: Original strand, 46784469 - 46784621
Alignment:
Q  116 gaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaaggcggcaacttgttcccattcc 215  Q
    ||||| |||| ||||||||||||||| || || || || |  |||||||||||||  |||||||| | ||| |||||||||||||| || || |||||||    
T  46784469 gaaagttttttcatgcaaaggatgaagaggtagggagatagaggatcaccttgtctaaggccatgagtaggtttgaaaggcggcaatttatttccattcc 46784568  T
Q  216 aaagtatagagtaactcggagaagctacgcaatgcatgatgagcttgatggtg 268  Q
    |||| |  ||| || | |  || |  || ||||||||||||||||||||||||    
T  46784569 aaaggacggagaaagttgatgacgtaacacaatgcatgatgagcttgatggtg 46784621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 182 - 273
Target Start/End: Complemental strand, 33804065 - 33803974
Alignment:
Q  182 gaaggcttgaaaggcggcaacttgttcccattccaaagtatagagtaactcggagaagctacgcaatgcatgatgagcttgatggtgatgtc 273  Q
    |||||||||||||| ||||  ||||| |||||||| |||||||||||  | |  || |  || |||||||||||||||||||||||||||||    
T  33804065 gaaggcttgaaaggaggcattttgtttccattccacagtatagagtatgtagatgaggaaacacaatgcatgatgagcttgatggtgatgtc 33803974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 119 - 209
Target Start/End: Complemental strand, 76057 - 75967
Alignment:
Q  119 agcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaaggcggcaacttgttcc 209  Q
    ||||||||||||||||||||||||||||||||||||||| | |||||||||| ||| ||||| | ||||||||| |  |||| ||||||||    
T  76057 agcttttccatgcaaaggatgaaaagataaggggacaactggtcaccttgtctgagaccatgagtaggcttgaaggaaggcagcttgttcc 75967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 119 - 225
Target Start/End: Original strand, 32874457 - 32874563
Alignment:
Q  119 agcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaaggcggcaacttgttcccattccaaa 218  Q
    |||||||||||||||| |||||| | ||| || || | ||| || ||||| ||||||||||| |||||||||||||| ||||||||||||||||| ||||    
T  32874457 agcttttccatgcaaatgatgaataaatagggagagagcgggtctccttggcggaggccatgagaaggcttgaaaggaggcaacttgttcccatttcaaa 32874556  T
Q  219 gtataga 225  Q
    | |||||    
T  32874557 ggataga 32874563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 119 - 273
Target Start/End: Complemental strand, 7817285 - 7817131
Alignment:
Q  119 agcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaaggcggcaacttgttcccattccaaa 218  Q
    ||||||||||||||||| |||||||| ||||| || || || ||||| |||| ||| ||||| | |||||||||||  || |  |||||||||||||| |    
T  7817285 agcttttccatgcaaagaatgaaaaggtaaggagataaagggtcaccctgtctgagaccatgagtaggcttgaaagaaggaagtttgttcccattccata 7817186  T
Q  219 gtatagagtaactcggagaagctacgcaatgcatgatgagcttgatggtgatgtc 273  Q
      ||||||||  | |  || | ||| |||||||||||||||||||| ||||||||    
T  7817185 aaatagagtagttggaggatgatacacaatgcatgatgagcttgattgtgatgtc 7817131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 7e-18; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 116 - 273
Target Start/End: Original strand, 24893833 - 24893990
Alignment:
Q  116 gaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaaggcggcaacttgttcccattcc 215  Q
    ||||||||||||||||| || |||||||||||||| || | ||| |||||||||| ||| ||||| |  ||||||||||| ||||  ||||| |||||||    
T  24893833 gaaagcttttccatgcatagtatgaaaagataaggagagagcgggtcaccttgtctgagaccatgtgtgggcttgaaagggggcattttgttaccattcc 24893932  T
Q  216 aaagtatagagtaactcggagaagct-acgcaatgcatgatgagcttgatggtgatgtc 273  Q
    | | ||| ||| ||   |||| || | || |||||||||||||||||||||||||||||    
T  24893933 ataatatggag-aatgtggaggaggtgacacaatgcatgatgagcttgatggtgatgtc 24893990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 116 - 200
Target Start/End: Original strand, 24990660 - 24990744
Alignment:
Q  116 gaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaaggcggca 200  Q
    |||||||| ||||||||||| |||||||||||||| || | ||| |||||||||| ||| ||||| |  ||||||||||| ||||    
T  24990660 gaaagcttctccatgcaaagaatgaaaagataaggagagagcgggtcaccttgtctgagaccatgggtgggcttgaaagggggca 24990744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 110 - 216
Target Start/End: Complemental strand, 13599745 - 13599639
Alignment:
Q  110 gcagctgaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaaggcggcaacttgttcc 209  Q
    ||||||||||| |||||||| || | |||||| |||||||| || |  ||||||||||| |||||  |||| | |||||||||  |||| |||||||| |    
T  13599745 gcagctgaaagtttttccatacacaagatgaagagataaggtgaaagaggatcaccttgacggagatcatgagtaggcttgaattgcggaaacttgttac 13599646  T
Q  210 cattcca 216  Q
    |||||||    
T  13599645 cattcca 13599639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 216
Target Start/End: Complemental strand, 35233599 - 35233542
Alignment:
Q  159 gatcaccttgtcggaggccatgcgaaggcttgaaaggcggcaacttgttcccattcca 216  Q
    |||||||||||||||| ||||| | ||||||||||   ||||||||||| ||||||||    
T  35233599 gatcaccttgtcggagaccatgtgtaggcttgaaattaggcaacttgtttccattcca 35233542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 113 - 216
Target Start/End: Original strand, 16769956 - 16770059
Alignment:
Q  113 gctgaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaaggcggcaacttgttcccat 212  Q
    ||||| || |||||||| || | |||||| |||||||| || |  |||||||||||||| || ||||| | ||| |||||| ||||||| ||||| ||||    
T  16769956 gctgagagtttttccatacacaagatgaagagataaggtgaaagaggatcaccttgtcgaagaccatgagtaggtttgaaatgcggcaatttgttaccat 16770055  T
Q  213 tcca 216  Q
    ||||    
T  16770056 tcca 16770059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 255
Target Start/End: Original strand, 1353794 - 1353927
Alignment:
Q  122 ttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaaggcggcaacttgttcccattccaaagta 221  Q
    |||||||| ||||| ||||||||||| || || |  ||||||||||||  ||||||||| | ||||||||| || | || ||| ||||||||| | || |    
T  1353794 ttttccatacaaagaatgaaaagatatggtgagagtggatcaccttgtatgaggccatgagtaggcttgaagggagacatctttttcccattcgagagga 1353893  T
Q  222 tagagtaactcggagaagctacgcaatgcatgat 255  Q
    ||||| || | |  || || ||||||||||||||    
T  1353894 tagagaaagtggaggaggcaacgcaatgcatgat 1353927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 264
Target Start/End: Original strand, 1579159 - 1579304
Alignment:
Q  119 agcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaaggcggcaacttgttcccattccaaa 218  Q
    ||||||||||||||||| || || || |||||||| | ||||||||| |||| ||| ||||| | ||| |  || || ||||||||||| | |||| | |    
T  1579159 agcttttccatgcaaagaataaagaggtaaggggagagcggatcaccctgtctgagcccatgagtaggatgaaagggaggcaacttgtttctattctaga 1579258  T
Q  219 gtatagagtaactcggagaagctacgcaatgcatgatgagcttgat 264  Q
    | |||||| || | | |||||  || |||||||||||||| |||||    
T  1579259 gaatagagaaagttgaagaagaaacacaatgcatgatgagattgat 1579304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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