View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8912A_low_144 (Length: 289)
Name: NF8912A_low_144
Description: NF8912A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8912A_low_144 |
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| [»] scaffold0005 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 12 - 283
Target Start/End: Complemental strand, 30750732 - 30750461
Alignment:
| Q |
12 |
aagaacataccccaacaagcatcaataaataatatagcttctctaaattcttgaaaccctaacttcaatccttgcaccaattccttgcttcttgctcacc |
111 |
Q |
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| T |
30750732 |
aagaacataccccaacaagcatcaataaataatatagcttctctaaattcttgaaaccctaacttgaatccttgcaccaattccttgcttcttcctcacc |
30750633 |
T |
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| Q |
112 |
cattaacatttaaatcttctttaggtcgagtgagaggataagaaatatggataggagtgtttatcattctggtttttaattacaaatttgaggcacaaac |
211 |
Q |
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||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
30750632 |
cattaacatttaaatcttctttaggtcgagtgagacggtaagaaatatggataggagtgtttataattctggtttttaattacaaatttgaggcacaaac |
30750533 |
T |
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| Q |
212 |
aatctaaaacacatgcatccaatcttcttagtgggaggtgaagattagatggttctcccatggtgatgaaga |
283 |
Q |
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| T |
30750532 |
aatctaaaacacatgcatccaactttcttagtgggaggtgaagattagatggttctcccatggtgatgaaga |
30750461 |
T |
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Back To:
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Target: chr6; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 13 - 86
Target Start/End: Complemental strand, 30760625 - 30760552
Alignment:
| Q |
13 |
agaacataccccaacaagcatcaataaataatatagcttctctaaattcttgaaaccctaacttcaatccttgc |
86 |
Q |
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| T |
30760625 |
agaacataccccaacaagcatcaataaataatatagcttctctaaattcttgaaaccctaacttcaatccttgc |
30760552 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0005 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 79 - 125
Target Start/End: Complemental strand, 241546 - 241500
Alignment:
| Q |
79 |
atccttgcaccaattccttgcttcttgctcacccattaacatttaaa |
125 |
Q |
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| T |
241546 |
atccttgcacaaattccttgcttcttcctcacccatcaacatttaaa |
241500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 79 - 125
Target Start/End: Original strand, 14575829 - 14575875
Alignment:
| Q |
79 |
atccttgcaccaattccttgcttcttgctcacccattaacatttaaa |
125 |
Q |
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| T |
14575829 |
atccttgcacaaattccttgcttcttcctcacccatcaacatttaaa |
14575875 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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