View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8912A_low_147 (Length: 287)

Name: NF8912A_low_147
Description: NF8912A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8912A_low_147
NF8912A_low_147
[»] chr1 (1 HSPs)
chr1 (5-287)||(17687513-17687795)


Alignment Details
Target: chr1 (Bit Score: 263; Significance: 1e-147; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 5 - 287
Target Start/End: Original strand, 17687513 - 17687795
Alignment:
Q  5 agattatactagtagggactatattggaagagcgtgatgctcgcctagtatttgtagtttatacgaagactgcaagttctaggagtaacgaggattggtg 104  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17687513 agattatactagtagggactatgttggaagagcgtgatgctcgcctagtatttgtagtttatacgaagactgcaagttctaggagtaacgaggattggtg 17687612  T
Q  105 gtttgcaaagaacctttctcatataaatatttgcataaacctagcgatttcaatgttttgccttgtaatgtgctcgtaaagagctggttaatttgagaag 204  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  17687613 gtttgcaaagaacctttctcatataaatatttgcataaaccaagcgatttcaatgttttgtcttgtaatgtgctcgtaaagagctggttaatttgagaag 17687712  T
Q  205 aattgtgcacgcaaatagtgaaggataacgatgcctatttgtttgtggttactacctggatcctctagatttgattttgatga 287  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||    
T  17687713 aattgtgcacgcaaatagtgaaggataacgatgcccatttgtttgtggttactacctggatcctctaggtttgattttgatga 17687795  T

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